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TNF affects TNFRSF1A
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TNF binds TNFRSF1A.
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sparser
"Tumor necrosis factor-alpha (TNF-α) binds to TNFR1 and TNFR2 and the TNFRs induce TNF-α production."
sparser
"Tumor necrosis factor binds to TNFR1 and TNR2."
sparser
"To examine the association of A20 with the p55 TNF receptor complex and its effect on the recruitment of IKK1 to the receptor and to examine the effect of NEMO on IKK1 recruitment, HEK 293T cells were seeded on 10 cm plates (2 × 10 6 /plate)."
sparser
"An exciting recent study of Gómez et al. [ xref ] showed that SpA interacts directly with TNFR1 and mimics TNF- α proinflammatory signaling by recruitment of the adaptor molecules the TNFR-associated death domain (TRADD), receptor-interacting protein (RIP), and TNFR-associated factor (TRAF) 2 to the receptor and the activation of the mitogen-activated protein kinases (MAPKs) p38 and c-Jun NH2-terminal kinases 1 and 2 (JNK1/2), which induces translocation and activation of transcriptional factor NF- κ B and mediates IL-8 gene expression."
sparser
"Extracellular TNF-α binds and activates two main receptors, TNFR1 (p55) and TNFR2 (p75) that are responsible for mediating the intracellular cytokine activity."
sparser
"Among the pathways in which KEGG is top-ranked and associated with diseases such as diabetes and inflammatory complication, the target proteins involved in metabolic pathways were adenosine deaminase (ADA), adenosine kinase (ADK), pancreatic alpha-amylase (AMY2A), fatty acid synthase (FASN), fructose-1,6-bisphosphatase 1 (FBP1), folate hydrolase 1 (FOLH1), leukotriene A-4 hydrolase (LTA4H), prostaglandin G/H synthase 2 (PTGS2), and sorbitol dehydrogenase (SORD); the target proteins involved in cancer-related pathways included GSK3 beta, inhibitor of nuclear factor kappa-B kinase subunit beta (IKBKB), IL6, peroxisome proliferators-activated receptors (PPAR), PTGS2, transforming growth factor beta-1 (TGFB1), cellular tumor antigen p53 (TP53), and vascular endothelial growth factor A (VEGFA); target proteins involved in the PI3K-Akt signaling pathway consisted of GSK3 beta, IKBKB, IL6, IRS1, spleen tyrosine kinase (SYK), toll-like receptor (TLR4), TP53, and VEGFA; the NF-kappa B signaling pathway interacted with proteins such as IKBK beta, interleukin-1 receptor-associated kinase 4 (IRAK-4), PTGS2, SYK, TLR4, TNF, and TNFRSF1A; mitogen-activated protein kinase (MAPK), IKBK beta, transforming growth factor beta-1 (TGFB1), TNF, TNFRSF1A, and TP53 interacted with the target protein involved in the MAPK signaling pathway; IKBKB and IL6 are involved in the Toll-like receptor signaling pathway, IRAK4, TLR4, and TNF; and the target proteins involved in the TNF signaling pathway included IL6, PTGS2, TNF, and TNFRSF1A. Previous studies have identified target proteins that were active in the mulberry leaves and involved in specific pathways."
sparser
"In the present study, we showed that development of cardiac hypertrophy was closely associated with the up-regulation of myocardial TNFR1, ADAM-17 and TNF-α, indicating an important role of TNF–α signal system in cardiac hypertrophy."
sparser
"The difference in the signaling of the p60 form of the TNF receptor and Fas has been reported previously [17]."
sparser
"RIPK1 rapidly associates with the TNF-activated TNFR1 signaling complex, and undergoes polyubiquitination with multiple linkages. xref , xref RIPK1 K63 polyubiquitination is critical for scaffolding the TAK/TAB kinase complex that phosphorylates IKKβ. xref Linear, methionine1-linked polyubiquitination of RIPK1 (effected by LUBAC) augments recruitment of IKKγ complexed to IKKα and IKKβ, which is then phosphorylated and thereby activated by transforming growth factor-β-activated kinase 1. xref Thus, deubiquitination of RIPK1 diminishes downstream NFκB activation."
sparser
"After the binding of TNF-α to TNFR1, the activated receptor may interact with RIP1 via the death domains (DD), which may recruit cellular inhibitor of apoptosis proteins (cIAPs) (such as cIAP1 and cIAP2) and subsequently form the plasma membrane associated complex, leading to the activation of nuclear factor κB and mitogen-activated protein kinases (MAPKs)."
sparser
"The antitumor activity of TNF-α is associated with death receptor-mediated programmed cell death, which is initiated by the binding of TNF-α to TNFR1 ( xref )."
sparser
"Upon stimulation of TNF-R1 with TNF-α, death domain-containing protein TRADD (TNF receptor-associated death domain) becomes associated with the receptor and then recruits another death domain protein via the death domain/death domain binding."
sparser
"Upon binding to TNFα, which is a trimer, TNFR1 also forms a trimer that recruits TNFR1-associated death domain protein (TRADD) and triggers the sequential formation of two distinct complexes: complex I and II, which activate NF-κB and apoptosis, respectively ( xref ) xref ."
sparser
"Upon binding to TNF, TNFR1 binds the adaptor protein TRADD which recruits caspase-8 via FADD leading to apoptosis [8] ."
sparser
"Thus, upon TNF binding, TRADD binds the DD of TNFR1 and, in turn recruits RIP1."
sparser
"The denser fractions failed to show association of TNFR1 with caveolin-1 even after TNF treatment."
reach
"In contrast, in cells exposed to both TNFalpha and AgNPs, the nanoparticles non specifically bind to TNFR1 and TNFalpha binds specifically with the same receptor, forming a TNFR1, TNFalpha, and AgNPs complex which then enters the cells by receptor mediated endocytosis."
sparser
"Pleural effusion as diagnosed by either chest X-ray or ultrasonography was associated with up-regulation of members of the NF-κB pathway such as TNFA and TNFR1 , but also with IL1RA , MIP1A and TLR1 and was inversely related to MIF and TLR7 ."
sparser
"Our study shows that high sCD30, TNFalpha, IL6 and TNF-RI levels are associated with advanced disease or a worse prognostic score."
sparser
"Interaction of TNF with TNFR2, but not TNFR1, is directly co-stimulatory to TCR-mediated T cell activation, as demonstrated by the effects of agonistic monoclonal antibodies to TNFR2 on human CD4 cells [ xref ]."
sparser
"Binding of TNF-α to its specific receptors TNFR1 and TNFR2, activation of different downstream mediators including NF-kB, c-jun N-terminal kinase (JNK), caspase cascade, phosphatidylinositide 3-kinase (PI3K)/Akt and reactive oxygen species (ROS) lead cells to inflammation and cell survival as well as cell death ( xref , xref )."
sparser
"Both TNFα (sTNF and tmTNF) can bind to both TNFR1 and TNFR2; sTNFα shows greater affinity for TNFR1 than TNFR2 causing inflammatory responses, leading to apoptosis, while tmTNFα acts mainly on TNFR2 leading to activation and cell survival."
sparser
"TNFα binds to two cognate receptors, TNFR1 and TNFR2 [ xref , xref ]."
sparser
"Although BCG induction of TNF can interact with both TNFR1 and TNFR2, it may induce TNF production at low levels, thereby possibly boosting the expansion of Tregs ( xref ), which can provide benefits for the treatment of autoimmune diseases."
sparser
"The soluble TNF-α can bind to TNFR1 and TNFR2 [28] , hence the expression pattern of both TNFR1 and TNFR2 in SH-SY5Y was analyzed in the presence/absence of TNF-α using real time PCR."
sparser
"The binding of TNFα and LTα to TNFR2 and TNFR1 have been well characterized structurally ( xref , xref )."
sparser
"We evaluated the inhibitory activity of compound 1 on the binding of TNFα to its receptors TNFRI and TNFRII using an ELISA assay."
sparser
"TNFα binds to two receptors, TNFR1 and TNFR2, which can form multimeric complexes upon ligand binding."
sparser
"TNF interacts with two plasma membrane receptors, TNF-R1 and TNF-R2."
sparser
"The binding of TNFR1-Ig and TNFR2-Ig to bovine TNF-α was analyzed by enzyme-linked immunosorbent assay (ELISA)."
sparser
"Using mice deficient in SP-A and MCs (SP-A −/− Kit W-sh/W-sh mice) engrafted with either TNF-α −/− or TNF receptor (TNF-R) −/− MCs, we found that augmented airway responses during M pneumoniae infection is a result of TNF-α interactions with MCs through the TNF-R and not MC-derived TNF-α."
sparser
"Using surface plasmon resonance, we measured single-site binding affinities for the large receptor TNFR1 binding to its ligands TNFα (K D = 1.4 ± 0.4 nM) and lymphotoxin-α (K D = 50 ± 10 nM), and also for the small receptor Fn14 binding to TWEAK (K D = 70 ± 10 nM)."
sparser
"Tumor necrosis factor receptor 1 (TNFR1) is a membrane receptor able to bind TNF-alpha or TNF-beta."
sparser
"TNF interacted with TYK2 and TNFRSF1A interacted with JAK2 , SOCS2 , SOCS1 , and STAT4."
sparser
"The Fas-Fas ligand interaction between macrophages and L929 cells increased the expression of Fas-associated death domain, and tumor necrosis factor-tumor necrosis factor receptor 1 interaction between macrophages and L929 cells increased the expression of tumor necrosis factor receptor-associated death domain in L929 cells."
sparser
"The possible reasons might be that the increased binding of Mt rh471 TNFalpha mainly to TNFR-p55 results in induction of apoptosis of SP cells, while Wt rhTNFalpha could bind to both TNFR-p55 and TNFR-p75 which would lead to NFkappaB activity, resulting in a discounted apoptotic effect."
sparser
"Moreover, since TNF-α can bind to two receptor subtypes, TNFR1 (p55-R) and TNF receptor 2 (p75-R), we next wish to examine which receptor is involved in SAH-induced apoptosis."
sparser
"RIP3 can also execute cell death in a RIP1-independent manner following interaction of TNFα with TNFR1 via c-Jun N-terminal kinases (JNK) activation and ROS overproduction."
sparser
"In the present study, binding activity of TNF-alpha to TNF-R1 and protein levels of IkappaB-alpha and nuclear transcription factor kappa B (NF-kappaB) p65 subunit in HeLa cells were measured using enzyme-linked immunosorbent assay (ELISA) and western-blot analysis."
sparser
"For those cytokines significantly associated with ALS, the ESs associated with the results of TNF-α, TNFR1 and VEGF were large, suggesting the potential usefulness of these cytokines as practical diagnostic biomarkers for ALS in the future."
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sparser
"TNF-TNFR1 binding activates the nuclear factor kappa-light-chain-enhancer of activated B cells (NF-κB), c-Jun amino-terminal kinase (JNK), the mitogen-activated protein kinases (MAPKs), and p38 [ xref ]."
reach
"Binding of TNF to TNFR1 induces the independent recruitment of the adaptor protein TRADD and the kinase RIPK1 to the receptor 's DD via homotypic DD interactions."
sparser
"The molecular mechanism of cell cycle arrest and apoptosis induced by QdNOs were explored. xref report that MEQ inhibited cell proliferation by arresting cells at the G2/M phase of the cell cycle. xref demonstrated that OLA induced cell cycle arrest to the S phase and dose-dependent apoptotic cell death in HepG2 cells through a caspase-9 and -3 dependent mitochondrial pathway. xref found that QCT induced apoptosis in HepG2 cells via activation of caspase, interaction of TNF-α and TNFR1 and modulation of the protein levels of Bid, Bax, and Bcl-2, involving the participation of p53, p38, and JNK."
reach
"In the network identified by GeneGo, conditions in the extracellular environment are sensed inside the cell via binding of TNF to TNF-R1, activating TNF-R1 [XREF_BIBR, XREF_BIBR]."
sparser
"TNF-α binds to its receptor TNFR-I in VSMC and EC and results in ROS production in a time and dose-dependent manner."
reach
"TNF interacts with two receptors, TNF-R1 and -R2."
reach
"In chronic inflammatory conditions, e.g. in IBD, interaction between TNF-alpha and TNFR1 can lead to stimulation of nuclear factor kappaB (NF-kappaB) in immune cells, which promotes transcription of genes, leading to cellular proliferation."
reach
"It has also been proposed that p70 can facilitate the binding of TNF to p55 (Tartaglia and Goeddel, 1992a)."
reach
"TNFalpha binds to TNFR1."
sparser
"TNF binding to TNFR1 triggers apoptosis through two pathways, by activation of the adaptor proteins TNFR1-associated death domain (TRADD) and Fas-associated death domain (FADD)."
sparser
"VanArsdale and Ware 1994 have demonstrated the TNF-dependent association with TNFR1 of a serine protein kinase activity in U937 cells."
sparser
"A slightly higher concentration of LTa was re- quired to inhibit 125I-TNF binding to p60:Fc (Ki ~ 650 pM)."
sparser
"Unlabeled TNF at a concentration of ~ 150 pM inhibited 50% of the maximum 125I-TNF binding (Ki) to p60:Fc."
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sparser
"Then the cells were resuspended in essential medium at a concentration of 5 x lO'/ml and incubated for another 16 h at 37 C. Thereafter specific TNF binding to p60 and p80 was determined as described in section 2."
sparser
"Here we report that blockade of IL-1α/β and TNFα binding to IL-1R and TNFR1, respectively, reduced neuropathology in parietal cortex, hippocampus, and thalamus and improved outcome."
TNF-R32W binds TNFRSF1A. 1 / 1
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reach
"Indeed, mutated R32W and S86T TNFalpha binds to TNFR1, whereas mutated D143N and A145R exclusively binds to TNFR2, suggesting that different subdomains of TNFalpha modulate its specificity towards TNFR1 or TNFR2 [31,32]."
TNF-S86T binds TNFRSF1A. 1 / 1
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reach
"Indeed, mutated R32W and S86T TNFalpha binds to TNFR1, whereas mutated D143N and A145R exclusively binds to TNFR2, suggesting that different subdomains of TNFalpha modulate its specificity towards TNFR1 or TNFR2 [31,32]."
TNF activates TNFRSF1A.
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10 |
bel
"Because RIP1 and TRAF2 are downstream effectors of the TNF receptor, it is possible that MNNG induces TNF through RIP1 and TRAF2 to trigger cell death. To investigate this possibility, we examined the sensitivity of TNFR1-/- MEF cells to MNNG treatment and found that it is comparable with that of WT MEF cells (Fig. 6c). As expected, TNFR1-/- MEF cells are resistant to TNF-induced cell death (Fig. 6c). These results exclude the possibility that RIP1 and TRAF2 function in the TNF signaling pathway in MNNG-treated cells."
bel
"The results support the following pathway, whereby TNF-alpha enhances expression of ICAM-1 in NHBE cells: TNF-alpha --> TNF-RI --> PC-PLC --> DAG --> PKC --> (NF-kappaB?) --> ICAM-1 mRNA --> ICAM-1 surface expression."
bel
"Consistent with the in vivo findings, p75 blockade resulted in significant reduction of TNF-induced VCAM-1 and E-selectin expression by 28 and 23%, respectively (P < 0.05), but had no significant effect on ICAM-1 (Fig. 4A). On the other hand, as with in vivo experiments, p55 blockade significantly decreased the expression of all adhesion molecules"
bel
"To determine the cytotoxic effects and the type of cell death facilitated by TNF in A549 cells, we treated cells with TNF and analyzed cell death based on morphological and biochemical assays. The death rate of A549 cells increased with increasing concentration of TNF (Fig. 1b), and cell death was characterized by cytoplasmic condensation and pyknotic nuclei without apoptotic body formation (Fig. 1c). Dose-dependent release of LDH into the culture medium was also noted (Fig. 1d); this is frequently encountered after necrotic cell death due to rupture of the cell membrane....Thus, TNF triggers necrotic rather than apoptotic cell death in A549 cells."
bel
"After being processed by such metalloproteinases as TNF-a-converting enzyme (TACE) between residues alanine76 and valine77, the soluble form of TNF-a of 157 amino acid residues (17 kDa) is released and mediates its biological activities through Type 1 and 2 TNF receptors (TNF-R1 also known as TNFRSF1A, CD120a and TNF-R2 also known as"
bel
"After being processed by such metalloproteinases as TNF-a-converting enzyme (TACE) between residues alanine76 and valine77, the soluble form of TNF-a of 157 amino acid residues (17 kDa) is released and mediates its biological activities through Type 1 and 2 TNF receptors (TNF-R1 also known as TNFRSF1A, CD120a and TNF-R2 also known as"
bel
"To investigate whether either or both TNF receptors control the expression of these cell adhesion molecules, HUVEC were stimulated from 0 to 10 h with human TNF-a binding to both receptor types, and with receptor type-specific agonists. The specific activation of TNF-R55 was achieved using three independent reagents: first the agonistic mAb htr-1, second the RaTNF-K55 agonistic antibodies, and third a recombinant mutant of human TNF-a, 32W/S86T-TNF-a (Trp32 Thr86 TNF), which binds exclusively to TNF-K55. TNF-R75 activation was achieved with RaTNF-R75 agonistic antibodies."
bel
"he binding of TNF to the cell surface receptor TNF-R1 causes the recruitment of the adapter protein TRADD to the cytoplasmic domain of the receptor. TRADD then serves to recruit additional signaling molecules, including FADD, TRAF2, and RIP1 (Chen and Goeddel 2002)."
bel
"TABLE 1. Cytokine/chemokines, their receptors, and functions."
bel
"he binding of TNF to the cell surface receptor TNF-R1 causes the recruitment of the adapter protein TRADD to the cytoplasmic domain of the receptor. TRADD then serves to recruit additional signaling molecules, including FADD, TRAF2, and RIP1 (Chen and Goeddel 2002)."
TNF bound to TNFRSF1A activates TNFRSF1A. 4 / 4
4 |
bel
"Tumor necrosis factor (TNF) alpha induced FLAP mRNA expression, FLAP promoter activity, and C/EBP alpha, delta, and epsilon binding to the proximal and distal promoter consensus sites."
bel
"Overexpression of NCOA-1, NCOA-2, and NCOA-3 enhanced E2-mediated gene expression by 3.17 +/- 0.51-, 2.33 +/- 0.8-, and 3.65 +/- 0.65-fold, respectively, and enhanced cell survival by suppressing tumor necrosis factor alpha (TNF-alpha)-induced cell death Overexpression of NCOA-1 and NCOA-3 exerted potent survival effects in breast carcinoma cells."
bel
"IAP, inhibitor of apoptosis; SMAC, second mitochondria-derived activator of caspase. In the death receptor pathway, ligands such as tumour-necrosis factor (TNF), FAS ligand (also known as CD95L), or TNF-related apoptosis-inducing ligand (TRAIL, also known as APO2 ligand (APO2L) or TNF ligand superfamily member 10 (TNFSF10)) interact with their respective death receptors (TNF receptor 1 (TNFR1), FAS (also known as CD95) and death receptor 4 (DR4, also known as TRAIL receptor 1 (TRAILR1)) or DR5 (also known as TRAILR2), respectively). These interactions ultimately lead to the recruitment of the FAS-associated death domain (FADD) and the activation of the protease caspase 8. Caspase 8 cleaves and activates caspase 3 and other downstream caspases, which results in a proteolytic cascade that gives rise to the cell death phenotype characterized by DNA fragmentation, chromatin condensation, cell shrinkage and membrane blebbing."
bel
"In contrast, the expression of cyclin D and E and the phosphorylation of Rb protein were not affected by ectopic expression of the drs gene, suggesting that an Rb-independent downregulation of cyclin A is involved in the suppression of anchorage-independent growth by means of the drs gene."
TNF increases the amount of TNFRSF1A.
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Transcriptionally active TNF increases the amount of TNFRSF1A. 7 / 7
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VEGFA affects NRP1
72 | 41 4
VEGFA binds NRP1.
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sparser
"NRP1 and VEGFA interacted with APOE -ε4 to modify the association between ε4 and the final global cognition score."
sparser
"NRP1 and VEGFA interacted with APOE -ε4 on cross-sectional global cognition, so we analyzed VEGFA and NRP1 isoform-specific interactions with APOE -ε4 on this outcome, which showed that pro-angiogenic coding transcripts of VEGFA ( VEGFA-207, VEGFA-205 ) and several protein coding transcripts of NRP1 interacted with APOE -ε4 on global cognition ( xref )."
sparser
"In summary, we found that NRP1 and VEGFA interacted with APOE -ε4 on cognition."
sparser
"Tumor cell proliferation is induced by VEGF-A binding to NRP1 through a Ras-dependent mechanism. xref Adhesion to extracellular matrix and therefore motility and invasive capabilities are also affected by VEGF/NRP pathways."
sparser
"Experiments are performed both in the absence and presence of the soluble ligand vascular endothelial growth factor A (VEGFA), which binds to both VEGFR2 and NRP1."
sparser
"NRP1 is a coreceptor for the VEGF receptor (VEGFR), and VEGFA binding to the heterodimer of NRP1–VEGFR2 has enhanced VEGF signaling activity compared with binding of VEGFA to VEGFR1–VEGFR2."
sparser
"For both fibrosarcoma and melanoma cell lines, they demonstrated the formation of trans NRP1-VEGFA-VEGFR2 complexes between endothelial cells and NRP1-overexpressing tumor cells."
sparser
"Now, NRP1-VEGFA-VEGFR2 interactions in trans ( i.e. VEGFA bridging receptors across cells) are also coming into focus."
sparser
"These dimeric VEGF-A ligands then interact with VEGFR2 and NRP1 via separate ends of the peptide [ xref , xref ] ( xref )."
sparser
"Moreover, VEGF-A 165 b prevents the formation of neuropilin–VEGFR2 complexes by VEGF-A 165 a [ xref ]."
sparser
"VEGF-A 165 binding to VEGFR2 and neuropilin 1 induces a conformational change in VEGFR2 (REF. xref ), which is thought to be similar to that of the ERBB2 receptor xref , resulting in internal rotation of the intracellular domain."
sparser
"These results suggest that cooperative binding of VEGF-A to KDR and NRP-1 enhances KDR phosphorylation and its biological activities."
sparser
"VEGFA binding to both VEGFR2 and NRP1 on the same endothelial cell forms a cis NRP1-VEGFA-VEGFR2 complex; the stoichiometry is likely two VEGFR2s, two NRP1s and one VEGFA."
sparser
"Co-immunoprecipitation analysis was employed to examine whether DDA affects VEGF-A-induced association of the NRP-1-VEGFR2 complex."
sparser
"In support of this idea, Zhang et al. provide evidence that VEGFR1 and NRP1 bind VEGF-A and prevent excessive VEGFR2 signaling that would otherwise promote button-to-zipper transformation and thereby reduce chylomicron uptake into lacteals."
sparser
"These results mean that down-modulation of phactr-1 expression is not solely due to the VEGF-A 165 binding to NRP-1 and/or VEGF-R1."
sparser
"However, recent biochemical studies demonstrated that Sema3A and VEGF-A bind to distinct domains of NRP1 [ xref , xref ] and induce NRP1 endocytosis through different pathways, suggesting that these NRP1 ligands function separately, rather than competitively."
sparser
"While previous in-vitro studies suggested competitive binding of Nrp1 by VEGF-A and Sema3A ( xref ; xref ; xref ), more recent in-vivo data suggests that this may not be the case."
sparser
"These studies suggest that VEGF-A interacts with NRP-1 and GIPC1 to regulate α6/β4-integrin, FAK, Src, PI3K/PDK1, LATS1 signaling to increase YAP1/∆Np63α accumulation to drive ECS cell survival, angiogenesis, and tumor formation."
sparser
"A co-immunoprecipitation analysis revealed that VEGF-A induced interactions between NRP1 and GIPC1, a scaffold protein, and complex formation between GIPC1 and Syx, a RhoGEF."
sparser
"These studies suggest that VEGF-A interacts with NRP-1 and GIPC1 to regulate α6/β4-integrin, FAK, Src, PI3K/PDK1, LATS1 signaling to increase YAP1/ΔNp63α accumulation to drive ECS cell survival, angiogenesis, and tumor formation."
sparser
"Formation of the Nrp1/mutant GlyRS complex antagonises Nrp1 interaction with one of its main natural ligands, vascular endothelial growth factor-A (VEGF-A), contributing to neurodegeneration."
sparser
"VEGF genes NRP1 and VEGFA interacted with APOE -ε4 on cognitive performance (p.fdr<0.05)."
sparser
"VEGF-A binds the b1 domain of NRP1 [ xref , xref , xref ] at exposed Tyr297 and Asp320 residue sidechains [ xref , xref , xref ], primarily via an exon 8a-encoded arginine residue (CDKPRR; critical arginine underlined) with homologous interacting residues in tuftsin (TKPR) [ xref , xref ] and peptide ATWLPRR [ xref , xref ]."
sparser
"VEGF121 binding to the NRP1 b1 domain is mediated by the exon 8-encoded domain, which carries a C-terminal arginine residue ( xref , xref )."
sparser
"The finding that heparin was able to partially restore VEGF-A 165 binding to other NRP1 b1 domain mutants, which caused substantial loss of binding in the absence of heparin suggests, however, that heparin is able to mediate binding interactions between the VEGF-A 165 C terminus and the b1 domain."
sparser
"The library was tested for the ability to inhibit alkaline phosphatase (AP)-tagged VEGF-A binding to Nrp1 utilizing an in vitro plate-binding assay."
sparser
"In this context, a human mAb (i.e., MNRP1685A) that blocks the binding of VEGF-A, VEGF-B, and PlGF to NRP-1 is currently under evaluation in clinical trials."
sparser
"NRP1 can bind to semaphorins instead of VEGFA and this impairs endothelial cell migration ( xref )."
sparser
"If NRP1 binds to semaphorin instead of VEGFA then endothelial cell migration is inhibited ( xref )."
sparser
"In NRP, the region comprising tandem coagulation factor V/VIII type domains b1 and b2 specifically interacts with the C-terminus of VEGF-A 165 with the b1 domain of NRP playing the most important role in VEGF-A binding xref , xref ."
sparser
"Instead, it has been reported that NRP-1 binds VEGF-A to facilitate its interaction with VEGFR leading to more efficient stimulation of angiogenesis [ xref – xref ]."
reach
"Binding of VEGF-A to neuropilin 1 is essential for proangiogenic activity."
reach
"VEGF-A binds to its receptors VEGFR1 (Flt-1), VEGFR2 (Flk-1), and coreceptors neuropilin 1 and 2."
sparser
"Nrp1 −/− hindbrains showed some defasciculation of these dorsolateral axons, but they were still clearly present in the mutant, suggesting that this are a suitable model to examine VEGFA isoform binding to NRP1."
sparser
"Here we report, novel promising small drug-like molecules disrupting the binding of VEGF-A₁₆₅ to NRP-1."
sparser
"Within the VEGF family, NRP1 binds VEGF-A, -B, -E and placenta growth factor (PlGF2), whereas NRP2 binds VEGF-A, -C, -D, and PlGF2 ( xref ; xref )."
reach
"It is of interest that we found fewer blood vessel capillaries in anti-Nrp-1B treated pups at day P5.5 (XREF_SUPPLEMENTARY), indicating that the formation of smaller blood vessels is impaired when VEGF-A binding to Nrp-1 is blocked, in line with previously reported effects of this antibody 24."
sparser
"To determine the effect of proteolytic activation of Sema3F on anti-angiogenic potency, we tested the ability of C-Sema to competitively block VEGF-A binding to neuropilin."
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sparser
"However, ITGAV rs3816375, NRP1 rs200809375, and VEGFA rs3024987 were not associated with PFS ( P >0.05)."
sparser
"The binding modes of both peptides were almost identical to those observed for Tuftsin and vascular endothelial growth factor A binding to the Nrp1 b1 domain."
VEGFA binds NRP1 and NRP2. 3 / 3
| 3
sparser
"VEGF-A 165 binding to NRP1 and NRP2 is important for migration of endothelial cells."
sparser
"Among many downstream factors of VEGFA [ xref , xref ], we found it was VEGFR2 rather than NRP1 and NRP2 associated with VEGFA in our study."
sparser
"However, this interaction alone is insufficient to explain the marked difference in potency of VEGF-A binding to Nrp1 and Nrp2, therefore other molecular determinants of this preferential binding must exist."
VEGFA-D320K binds NRP1-D320K. 1 / 1
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reach
"However, VEGF binding by Nrp1 is required for arteriogenesis, as Nrp1 D320K VEGFA binding deficient mice display reduced blood flow recovery following ligation of the common femoral artery and induction of hindlimb ischemia."
VEGFA activates NRP1.
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VEGFA activates NRP1. 36 / 36
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IL1B affects IL1R1
5 1 34 | 32 5
IL1B binds IL1R1.
1 17 | 32 5
1 17 | 28 5
biogrid
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sparser
"A model of IL-1RAcP was calculated on the basis of alignment of primary sequence and secondary structure with IL-1R, and then modeled on the crystal structure of IL-1R bound to IL-1β ."
sparser
"Binding of IL-1β to the IL-1R1 induces formation of a signaling complex with the IL-1 receptor accessory protein, which are both members of the Toll-like receptor family of proteins [ xref , xref ]."
reach
"Previous studies reported that IL1beta and TNFalpha exert toxic effects by binding to their cognate receptors, IL1-R1 and TNFR1, respectively, triggering downstream signaling pathways that activate transcription factors, such as NFkappaB or AP1 which in turn lead to the production of NO and ROS."
reach
"In addition, IL-1beta interaction with IL-1R1 on ECs induces migration of the cells and tube formation, mainly via activation of p38-mitogen-activated protein kinase (MAPK) and MAPK activated protein kinase 2."
sparser
"Microglia-derived IL-1β also binds to IL-1R1 on the abluminal endothelial surface, causing BMEC to release signals that further increase microglial IL-1β production and also trigger IL-6 and prostaglandin synthesis."
sparser
"The ability of Vhp19 to interfere with IL-1β binding to IL-1R was assessed and compared to inhibition of IL-1β biological activity."
reach
"The affinity of IL-1R2 for IL-1beta is 10 -10 M, while its affinity for IL-1alpha is 100 times less at 10 -8 M. IL-1R1 binds IL-1alpha at 10 -10 M, but binds IL-1beta at 10 -9 M."
reach
"The major IL-1 family members are IL-1 alpha (IL-1alpha) and IL-1 beta (IL-1beta), both of which bind to the cell surface IL-1 Receptor 1 (IL-1R1) 16."
reach
"When IL-1beta binds to IL-1R, the RhoGDI becomes phosphorylated by mechanisms that are not entirely clear and releases Rac1-GDP."
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sparser
"Downstream of IL-1β activation, pharmacological inhibition of IL-1R with anakinra resulted in decreased TAA formation similar to IL-1β and IL-1R knockout mice."
sparser
"Once extracellular, IL-1α and mature IL-1β bind to the IL-1R1 to initiate downstream signalling in a range of cell types [ xref ]."
sparser
"IL-1R1, which binds to both IL-1α and IL-1β, can be detected in a variety of cell types, whereas the IL-1R2 is found on the cell surface of type B lymphocytes, neutrophils and macrophage, and binds with IL-1β with higher affinity[ xref ]."
sparser
"In contrast, IL-1Ra acts as an antagonist of IL-1R1, preventing the binding of IL-1α and IL-1β with IL-1R1, respectively."
sparser
"Binding of IL-1R1 with IL-1α or IL-1β leads to subsequent recruitment of IL-1RAcP at the cell membrane [ xref ] and downstream cytosolic NF-κB activation."
sparser
"IL-1ra is a cytokine produced by monocytes, macrophages, and dendritic cells, which prevents the binding of IL-1α as well as IL-1β to IL-1R1 by competitively blocking IL-1RI receptors [ xref , xref ]."
sparser
"Both IL-1α and IL-1β bind to IL-1R1 and form an activating complex with the signaling chain IL-1R3."
sparser
"Both IL-1α and IL-1β bind to same IL-1R, and bone marrow-derived macrophages produced both IL-1α and IL-1β in response to LCWE in vitro ( xref )."
sparser
"Although both IL-1α and IL-1β can interact with IL-1R1 to induce downstream transcription of inflammatory genes, they show considerable differences in their localization, regulation, and function."
sparser
"Following binding of IL-1α or IL-1β to the type I IL-1R, a second protein, the IL-1 receptor accessory protein (AcP), is recruited to the complex (Greenfeder et al., 1995) ."
sparser
"Because mice deficient in the IL-1R cannot respond to IL-1, this result demonstrated that either IL-1α or IL-1β, both of which bind to the IL-1R, contributed to acute pathology after rVSV immunization."
sparser
"IL-1α and IL-1β bind to IL-1R1 complexed to the IL-1 receptor accessory protein and induce similar physiological effects."
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sparser
"However, unexpectedly, the IL-1β-induced interaction between IL-1R and IL-1RAcP was unaffected in cells pretreated with brazilin ( Fig. 6 A, top left panel, fourth to sixth rows), indicating that down-regulation of IL-1β responsiveness by brazilin is independent of the heterodimerization between IL-1R and IL-1AcP."
sparser
"A model for the interaction of the extracellular parts of type I IL-1R and IL-1RAcP with IL-1β was proposed [68] ."
sparser
"IL-1RI binds IL-1α, IL-1β and IL-1R antagonist (IL-1Ra)."
sparser
"Saturation binding analysis indicates an equilibrium dissociation constant (KD) of 350 pM for the binding of IL-1R-IgG to its ligand, IL-1 beta."
sparser
"Herein, we describe in vitro and in vivo nonclinical Investigational New Drug (IND)-enabling studies of EBI-005, a novel protein chimera of IL-1β and IL-1 receptor antagonist (IL-1Ra or anakinra) that potently binds IL-1R1 and blocks signaling."
sparser
"Of the three forms of IL-1, soluble type II IL-1R binds IL-1 beta with highest affinity and also selectively inhibits IL-1 beta activity."
sparser
"These residues are poorly conserved in the deduced sequences encoding halibut and other teleost IL-1β [ xref – xref ], indicating the involvement of other amino acids in the interaction between fish IL-1β and IL-1Rs."
sparser
"Because mice deficient in the IL-1R cannot respond to IL-1, this result demonstrated that either IL-1a or IL-1b, both of which bind to the IL-1R, contributed to acute pathology after rVSV immunization."
sparser
"IL-1B and IL-1A are encoded by distinct genes and bind both to IL-1R1, found on nearly every cell and IL-1R2 ( xref )."
sparser
"Interleukin-1α (IL1α) and interleukin-1β (IL1β) both bind to IL-1R1 to initiate cell signaling."
sparser
"IL1R2 (2q11): Interleukin 1 receptor, type II binds IL1a, IL1b and IL1R1, inhibiting the activity of these ligands."
sparser
"The binding of IL-1alpha or IL-1beta to IL1R is an early step in IL-1 signal transduction and blocking this interaction may therefore be a useful target for the development of new drugs."
IL1B binds IL1R1 and IL1RN. 3 / 3
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sparser
"The type I IL-1R binds IL-1α, IL-1β and the receptor antagonist IL-1Ra (reviewed in Ref. [65] )."
sparser
"In addition, IL-1R1 can be released into the extracellular space where, in its soluble form (sIL-1R1), it can also function as a soluble decoy receptor and prevent the binding of IL-1α, IL-1β, and IL-1Ra to membrane IL-1R1 ( xref )."
sparser
"On the mRNA level of MSC, we found IL1RN, which binds to IL1R on the cell surface with subsequent inhibition of the IL1beta signaling pathway, to be upregulated from a low basal level of expression upon stimulation with the PTC (318-fold) or IL1beta (107-fold) and to remain unchanged after stimulation with IL6, IL8, C3a and C5a in concentrations used in the “cocktail” ( xref )."
TLR4 binds IL1B and IL1R1. 1 / 1
| 1
sparser
"IL-1β or LPS binding to IL-1R or TLR4, respectively, results in the rapid association of the adaptor molecule Myd88 with the receptors and subsequent recruitment of the kinases IRAK1 and IRAK4. xref Activation and phosphorylation of IRAK kinases leads to the recruitment of the E3 ubiquitin ligase TRAF6 which undergoes K63-linked autoubiquitination and serves as a scaffold to recruit TAK1 and IKK kinases through binding to TAB2/3 and NEMO, respectively. xref TAK1 is subsequently activated and triggers IKK/NF-κB and mitogen-activated protein kinase/c-Jun N-terminal kinase activation. xref "
IL1B activates IL1R1.
5 17 |
IL1B activates IL1R1. 15 / 15
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IL1B activates IL1R1. 5 / 5
5 |
bel
"The IL-1 family of receptors is comprised of ten distinct but related gene products. The receptors are indicated by the term IL-1 receptor (IL-1R) followed by a numeral, assigned chronologically by discovery, for example, IL-1R1, IL-1R2, IL-1R3, etc. The ligand binding chain for IL-1α and IL-1β is IL-1R1 and the accessory chain is IL-1R3."
bel
"After IL-1 binds to IL-1RI, an IL-1RAcP is recruited to form a high affinity IL-1R1-IL-1RAcP heterodimeric receptor, which initiates the downstream signaling cascade."
bel
"After IL-1 binds to IL-1RI, an IL-1RAcP is recruited to form a high affinity IL-1R1-IL-1RAcP heterodimeric receptor, which initiates the downstream signaling cascade."
bel
"Furthermore, IL-18R at least partly shares the signal transducing system with IL-1R. Thus, the IL-18-IL-18R system has a striking similarity to the IL-1-IL-1R system. From entrez gene summary of IL1R1: The protein encoded by this gene is a cytokine receptor that belongs to the interleukin 1 receptor family. This protein is a receptor for interleukin alpha (IL1A), interleukin beta (IL1B), and interleukin 1 receptor, type I(IL1R1/IL1RA). It is an important mediator involved in many cytokine induced immune and inflammatory responses."
bel
"Furthermore, IL-18R at least partly shares the signal transducing system with IL-1R. Thus, the IL-18-IL-18R system has a striking similarity to the IL-1-IL-1R system. From entrez gene summary of IL1R1: The protein encoded by this gene is a cytokine receptor that belongs to the interleukin 1 receptor family. This protein is a receptor for interleukin alpha (IL1A), interleukin beta (IL1B), and interleukin 1 receptor, type I(IL1R1/IL1RA). It is an important mediator involved in many cytokine induced immune and inflammatory responses."
IL1B activates IL1R1 bound to IL1RAP. 2 / 2
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THBS1 affects CD47
16 | 40 8
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8 | 40 8
8 | 26 7
sparser
"Finally, results show that TSP-1 utilizes cell surface receptors CD36 and CD47 to augment chemotaxis, but DBP does not bind to TSP-1, CD36 or CD47."
sparser
"Furthermore, this paper also reveals that DBP does not bind to TSP-1, CD36 or CD47 ( xref ) and that TSP-1 utilizes these cell surface receptors to augment chemotaxis to C5a ( xref – xref )."
sparser
"Because CD47 is known to associate laterally with other signaling receptors, including VEGFR2, and TSP1 binding to CD47 inhibits VEGFR2 signaling by dissociating CD47 xref , we hypothesized that interaction of CD47 with the CD14 complex might similarly modulate signal one."
sparser
"Binding of CD47 to other ligands such as integrins, TSP-1 and TSP-1-derived peptides, also involves the IgV domain of CD47 [ xref ]."
sparser
"In addition, TSP-1 can also bind to different integrins, CD47 and heparan sulfated proteoglycans [ xref ]."
sparser
"These activities are mediated, at least in part, by interactions of TSP1 with CD47 and HSPGs on T cells (this study; xref )."
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reach
"This anti-angiogenic activity results in part from the ability of physiological concentrations of TSP1 binding to CD47 to control NO signaling, which is necessary for signaling by several pro angiogenic factors [XREF_BIBR]."
sparser
"Otherwise, TSP-1 binding to CD47 also inhibits differentiation of naïve T cells into Th1 ( xref ), whereas Tregs formation is induced by promoting Foxp3 transcription factor expression ( xref ; xref )."
reach
"We have previously identified TAX2 peptide as an orthosteric antagonist for thrombospondin-1 (TSP-1) interaction with the cell-surface receptor CD47."
reach
"56 It would be interesting to investigate the effect of CD47 blockade on the antitumour capabilities of T cells, as previous studies have suggested that CD47 negatively regulates the differentiation of Th1 CD4 + T cells 195 and interacts with TSP-1 to inhibit T cell proliferation."
reach
"For example, B6H12 inhibits binding of TSP1 to human CD47, and TSP1 binding to CD47 inhibits NO signaling in vascular endothelial cells."
sparser
"Thus, we sought to identify an innovative selective antagonist for TSP-1:CD47 interaction."
sparser
"TSP1 binding to CD47 has global functional consequences by inhibiting endothelial nitric oxide (NO) production, controlling vascular tone, and maintaining systemic hemodynamics and cardiac dynamics in stressful conditions [ xref , xref , xref , xref ]."
reach
"The rule for TSP1 binding to CD47 is illustrated in Figure XREF_FIG."
reach
"The binding of CD47 to either SIRPalpha or TSP1 provides two anticancer strategies."
sparser
"We discussed herein the interactions of TSP-1 with well-known partners such as CD36, CD47, NO, and TGF β 1."
sparser
"Conversely, the Ca1 domain does not interact with the TSP-1 receptors CD36 and CD47, excluding their involvement in the potentiation of PDGF."
sparser
"The C-terminal domain of TSP1 binds the cell surface receptors CD36 (glycoprotein IV) and CD47 (Integrin Associated Protein, IAP, or Rh-related antigen), and both receptors have anti-angiogenic effects."
sparser
"Nevertheless, some putative side-effects of using TAX2 as an anti-cancer agent still need to be explored, particularly as TSP-1 interaction with CD47 and/or CD36 is also known to modulate platelet aggregation ( xref )."
sparser
"In endothelial cells, TSP-1 can bind to CD36 and CD47 through its type-1 repeats and carboxyl-terminal domain to inhibit cell proliferation and promote anti-angiogenic events xref , xref ."
sparser
"Through its original mechanism of action which supposes concomitant disruption of TSP-1:CD47 interaction and enhancement of CD36 activation by TSP-1, TAX2 may inhibit tumor progression while limiting many of the undesired side effects of broadly inhibiting important physiological functions of CD47."
sparser
"Inhibition of TSP-1 binding to either CD36 or CD47 using peptide mimics of the binding sites was investigated next."
sparser
"This might be of utmost importance for the contributions of endothelial cell-mediated angiogenesis following TSP-1 binding to CD36 and CD47."
sparser
"We studied two peptides interacting with CD36, CSVTCG and GDGV(dI)TRIR [11,16] and 4N1-1, one of the two CD47 binding sites of TSP-1 [15] ."
sparser
"These results indicate that that TSP-1 cell surface binding to CD36 and CD47 is essential for chemotaxis enhancement, and suggest that CD36 may be the more important of the TSP-1 receptors for enhancing chemotaxis to C5a."
sparser
"TSP-1 and its potential membrane receptors, e.g. alphaIIbbeta3 integrin, CD36 and CD47, concomitantly associated with the actin cytoskeleton."
sparser
"Ligation of CD47 by extracellular thrombospondin-1 is associated with down-regulation of IL-12 production by antigen-presenting cells [ xref ], and inhibits human naive T cell differentiation to Th1 cells but not to Th2 cells [ xref ]."
sparser
"TSP-1 binds CD47 to inhibit the release of interleukin (IL)-2 ."
sparser
"TSP1 can also interact with integrin-bound fibrinogen, which may further increase clustering between IAP and αIIb/β3."
sparser
"The COOH-terminal domain of TSP-1 binds to CD47, also known as integrin-associated protein [ xref ]."
sparser
"The COOH-terminal domain of TSP-1 binds to CD47, also known as integrin-associated protein. [ xref ] This domain also interacts with integrins such as β 1 and β v6 integrins and actively binds to proteoglycans allowing cell adhesion and spreading [ xref ]."
reach
"Previous work XREF_BIBR has shown that TNF-alpha up-regulates the TSP1, CD36, and CD47 complex in cultured myoblasts and that the TSP1-CD36-CD47 was up-regulated in sIBM."
sparser
"To date we have validated TSP1 antibodies that block TSP1 binding to CD47, CD47 antibodies that block TSP1 binding, and antisense approaches that suppress CD47 expression [ xref , xref – xref ]."
| 10
sparser
"TSP-1 and SIRP-α bind CD47 IgV loop xref and TSP-1 can inhibit SIRP-α-Fc binding to CD47 expressing-Jurkat cells xref ."
sparser
"The binding of CD47 to either SIRPα or TSP1 provides two anticancer strategies."
sparser
"Given recent insights into the physiological functions of CD47, potential side effects of therapeutic CD47-antibodies such as B6H12, which inhibits both CD47-SIRP and CD47-TSP1 interactions, include altered blood pressure [ xref ], hemolytic anemia, and prothrombotic or antithrombotic activities [ xref , xref ]."
sparser
"Interestingly, both TSP-1 and SIRPα are interacting with CD47 during synaptogenesis xref , xref , xref , xref , which means that other mechanisms appear to be involved in CD47-dependent regulation of the type of nerve fiber growth investigated in the present study."
sparser
"Notably, the widely used CD47 blocking antibody B6H12 inhibits binding of both SIRPα and TSP1 to cell surface CD47 ( xref )."
sparser
"However, CD47 modified nanoparticles showed a prominent anti-phagocytosis property in M1 cells that may in part be due to the complex signalling interactions of CD47 with SIRPα and TSP-1."
sparser
"One approach to avoid these shortcomings is to identify and develop small molecule molecular probes and pretherapeutic agents that would (1) selectively target SIRPα or TSP1 interactions with CD47, (2) provide a route to optimize pharmacokinetics, reduce on-target toxicity and maximize tissue penetration, and (3) allow more flexible routes of administration."
sparser
"This data is consistent with competitive binding of TSP1 and SIRPα to a single site on CD47, steric inhibition of binding to distinct but proximal sites, or allosteric inhibition ( xref )."
sparser
"Thus, we propose that treatment of tumor-bearing animals with CD47 blocking antibodies, which are known to inhibit both SIRPα and TSP1 binding to CD47, could directly modulate adaptive as well as innate anti-tumor immunity."
sparser
"Indeed, CD47 antibody targeting may affect NO pathway modulation and subsequent angiogenesis regulation, since a commonly used CD47-blocking antibody (clone B6H12) was previously shown to concomitantly disrupt both TSP-1:CD47 and CD47:SIRPα interactions ( xref )."
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sparser
"The increase in capillarity may be associated by changes in the interaction between VEGF-A, TSP-1, and CD47."
sparser
"Additional studies are required to investigate the signaling mechanism of (−)-epicatechin on the VEGF-A-TSP-1-CD47 interaction as well as determine the prolonged effects upon cessation."
THBS1 binds THBS1 and CD47. 1 / 1
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sparser
"Some studies demonstrate increased angiogenesis associated with TSP-1 overexpression (reviewed in [ xref ]), which could be due to the TSP1-dependent CD47 ligation, which may increase the motility and invasiveness of the tumor cells [ xref ]."
THBS1 binds CALR and CD47. 1 / 1
| 1
sparser
"These results unveil an autocrine mechanism of calreticulin-thrombospondin-1-CD47 interaction for the control of T cell motility and migration within three-dimensional extracellular matrix substrata."
THBS1 binds CD47 and CD47. 1 / 1
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reach
"In chondrocytes, a TSP, CD47, and IAP complex may associate with alpha5beta1 integrin to modulate alterations in integrin affinity and avidity state critical in the mechanotransduction process."
THBS1 activates CD47.
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SPP1 affects CD44
20 | 39 3
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10 | 39 3
10 | 38 3
sparser
"Co-immunoprecipitation analysis was performed to check OPN-induced CD44 and c-Met interaction."
sparser
"We demonstrated that in the absence of OPN, CD44 and c-Met interact."
sparser
"The interaction between CD44 and its ligands, hyaluronan and osteopontin, mediates pressure-induced fibrotic responses in renal tubular cells at the early stage xref ."
sparser
"CD44 and its activator ligands, hyaluronan and osteopontin, interact with each other in a signaling network to launch with various tumorigenic processes involving several growth regulation, survival, differentiation and motility."
sparser
"To illustrate the usefulness of our data mining approach, we utilized the program output to generate a hypothesis for a biological function of CD44 interaction with osteopontin (OPN) and laminin in axon outgrowth of CNS neurons."
sparser
"The principal ligand for CD44 is hyaluronic acid (HA) but other extracellular-matrix (ECM) proteins including serglycin, collagen, fibronectin, chondroitin sulfate, laminin, and OPN also bind CD44."
sparser
"Because the interactions between CD44 and its ligands, HA and OPN, have been shown to upregulate osteoclast differentiation and function, in addition to the cell-cell interactions mediated by RANK and RANKL, the cell-matrix interactions mediated by these molecules may also contribute to the progression of osteoclastic bone destruction."
sparser
"This protein was utilized to study the possible competition of biotin-C21 binding to CD44 by HA (Figure xref ) and OPN (Figure xref )."
sparser
"OPN directly interacts with integrin β3 and CD44 [ xref , xref ]; the RGD and SVVYGLR sequences in OPN are responsible for its interaction with integrin [ xref ], while CD44 binding sites in the OPN sequence have not yet been identified."
sparser
"05) (Figure 5D), and we hypothesized that this was due to CD44 receptor-ligand interactions with lung-derived SELL and/or OPN."
sparser
"Two OPN receptors, αvβ3 and CD44 have been especially associated with OPN-induced cell migration ( xref , xref , xref , xref )."
sparser
"Our preliminary studies further suggest that OPN-mediated effects may occur via OPN-CD44 and OPN-αvβ3 interactions (putative OPN-receptors), and/or via MZF1 regulation of TGF-β mRNA (a zinc finger transcription factor) (Mi Z, personal communications)."
sparser
"The specific, dose and integrin-dependent binding of osteopontin to CD44 is implicated with roles in adhesion, migration, modulation of cytokine secretion, anti-apoptotic signaling and tumor invasion ( xref )."
sparser
"The interactions between OPN, integrins, and CD44 are involved in adhesion, migration, homing, survival and proliferation of tumor, and stromal cells (reviewed in Wai & Kuo, 2008 )."
sparser
"Our studies also demonstrate that HCV-induced OPN interacts with integrin αVβ3 as well as CD44 at the cell surface and induces signaling cascade through phosphorylation/activation of FAK, Akt and Src."
sparser
"Binding of OPN to integrin and CD44 receptors regulates signalling cascades that affect processes such as adhesion, migration, invasion, chemotaxis and cell survival."
sparser
"In target cells, OPN binds to a high number of integrins and CD44 to promote profibrogenic and inflammatory actions( xref )."
sparser
"Bone-derived OPN interacts with CD44 and RGD-dependent integrins to enhance migration."
sparser
"siRNA-mediated down-regulation of OPN or treatment with neutralizing antibody against OPN blocked OPN binding to its receptors, such as CD44 and integrins, and significantly inhibited the activation of OPN-mediated survival signaling, including FAK, SRC, and STAT3 pathways, consequently weakened EMT-associated CSC-like properties (Figure xref )."
sparser
"Furthermore, we show the binding of secreted OPN to integrin αVβ3 and CD44 at the cell surface, leading to the activation of downstream cellular kinases such as focal adhesion kinase (FAK), Src, and Akt."
sparser
"OPN binds to multiple integrin receptors and CD44, which is one of the main OPN receptors xref ."
sparser
"The binding of OPN to integrins and CD44 initiates a downstream signalling cascade via the PI3K/AKT signalling pathway leading to NF-κB mediated cell proliferation and survival ( xref – xref )."
sparser
"Although other extracellular matrix components such as osteopontin, collagens, growth factors, and metalloproteinases can bind to CD44, hyaluronan (HA) is the most common and immediate ligand for CD44."
sparser
"HA as a CD44 ligand interacts with osteopontin, collagen, and laminin."
sparser
"g, gp100, LAM cells also express estrogen and progesterone receptors [ xref ], vascular endothelial growth factor receptor 3 (VEGF-D3) [ xref - xref ], chemokine receptors [ xref , xref ], CD44v6, a glycoprotein associated with metastasis [ xref ], osteopontin, a regulator of CD44 [ xref ], and matrix metalloproteinases (MMP) [ xref ]."
sparser
"As seen from Fig.  xref , OPN (SPP1) directly interacts with CD44 and FGF2, which in turn interact with several other proteins, including vimentin (VIM) through CD44."
sparser
"The intracellular form of OPN (iOPN), an integral component of the CD44-ERM complex, is seen to be involved in migrating fibroblasts, macrophages, osteoclasts, and metastatic breast cancer lines [ xref , xref ]."
sparser
"These results provide evidence that diffuse, concussive brain trauma induces a postinjury interaction between MMP9, OPN and CD44 which mediates synaptic plasticity and reinnervation within the OB."
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sparser
"The interaction of OPN with CD44 induces the migration of breast, melanoma, and multiple myeloma cells [ xref , xref , xref ]."
sparser
"In this study we did not investigate OPN binding interactions with CD44 on LCs/DCs."
reach
"Lee et al. have reported the results showing that interaction between OPN and CD44 increased the resistance to UV induced apoptosis in gastrointestinal cancer cells [22]."
sparser
"Binding of OPN to tumor cell membrane receptor CD44v6 can enhance tumor cell motility [ xref ] and increase the immune adaptation of OPN-expressing cells [ xref ]."
reach
"OPN binding to CD44 also increases clonogenicity of colon cancer cells through c-jun-jnk signaling (Rao et al., 2013)."
reach
"The specific, dose and integrin dependent binding of osteopontin to CD44 is implicated with roles in adhesion, migration, modulation of cytokine secretion, anti-apoptotic signaling and tumor invasion."
sparser
"These results suggest that the functional interaction between osteopontin and CD44 protects AVSc-VICs from calcium deposition."
sparser
"Binding of OPN to CD44 induces foci formation, invasion, and tumorigenesis of H-Ras-V12-transformed cells ( Teramoto et al., 2005 )."
sparser
"Binding of osteopontin to the intracellular part of CD44 is important for cytoskeletal functions [ xref , xref ], transcriptional regulation, and anti-apoptotic signaling in normal and malignant cells [ xref , xref , xref , xref ]."
sparser
"Extensive overlapping fragment analyses suggests that both dentin matrix protein 1 and osteopontin interact with cell surface CD44 through their amino termini."
sparser
"The siblings OPN and DMP1 also bind CD44, a cell surface polymorphic hyaluronate receptor that participates in numerous cellular functions including lymphocyte activation, recirculation, homing, hematopoiesis, and tumor metastasis."
sparser
"Other factors reported to be important in murine HSC lodgment include transmembrane-bound stem cell factor [ xref ] and osteopontin, which can bind to CD44, as well as α 4 β 1 and α 9 β 1 integrins, and can act as a chemoattractant [ xref ]."
sparser
"Conclusion APS combined with DDP could significantly inhibit the growth and metastasis of Lewis lung cancer cells, which might be associated with the reduced expression of CD44, CD62P and OPN."
SPP1 binds CD44 and FN1. 1 / 1
| 1
sparser
"In conclusion, increased expression of inflammation-related genes of renal tubular cells induced by crystal formation and deposition could induce monocyte-macrophage migration and phagocytosis via the interaction of CD44 with osteopontin and fibronectin."
SPP1 activates CD44.
10 |
SPP1 activates CD44. 10 / 10
10 |
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IL10 affects IL10RB
2 30 | 19 9
IL10 binds IL10RB.
15 | 19 5
15 | 19 5
sparser
"IL-10 binds to both IL-10R1 and IL-10R2 which are closely linked to IL-20 sub family cytokine (except IL-22) [ xref ]."
sparser
"However, IL-10R2 interacted with defined IL-10- and IL-22-derived peptides supporting the hypothesis that cytokine binding to its corresponding R1 chain creates a binding site on this cytokine for IL-10R2."
sparser
"Expression of IL10RB was also increased (5-fold) in response to diclofenac treatment; as a co-receptor, IL10RB interacts with heterodimeric receptor complex of IL-10 cytokine family members and activate JAK/STAT signaling pathway [ xref – xref ]."
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sparser
"In this example our goal was to see whether an interaction between IL10 and IL10RB has a synergistic effect on the risk for GVHD."
reach
"Furthermore, the R198W substitution mutation in IL-10RB, also destroys the interaction between IL-10 and IL-10RB, and this mutation is observed in endometrioid carcinoma."
sparser
"For instance, E41* nonsense mutation in IL-10RB, abolishes the interaction of IL-10 with IL-10RB, blocking IL-10 signaling."
sparser
"The IL-10R2, which is widely expressed [ xref – xref ], binds IL-10 only after IL-10 binds to the IL-10R1 [ xref – xref ]."
reach
"Recent study of binding of IL-10 to IL-10R2 by peptide scans [XREF_BIBR] showed that, although IL-10R2 did not form a binary complex with IL-10, it recognized regions of helix A and loop AB of IL-10 (amino acid residues 19-43) when they were presented as 15-mer peptides."
reach
"During the IL-10 signaling transduction, IL-10 binds to receptors IL10RA and IL10RB, and activates Jak1 and Tyk2, leading to phosphorylation of STAT3."
reach
"IL-10 binds IL-10R, a dimeric receptor composed of a high affinity IL-10R1 chain predominantly expressed on leukocytes and unique to IL-10 recognition, and an ubiquitously expressed IL-10R2 chain involved in the recognition of other cytokines from the IL-10 family (IL-22, IL-26, IL-28A, IL-28B, and IL-29) [XREF_BIBR, XREF_BIBR]."
reach
"While the IL-10R1 and IL-10R2 ECDs bind IL-10, the ICDs are constitutively associated with JAK1 and TYK2 kinases, respectively."
sparser
"Thus, in addition to pairing with IL-10R1 to form the IL-10 signaling complex, IL-10R2 forms IL22R1/IL-10R2 ( xref ; xref ), IL-20R1/IL-10R2 ( xref ; xref ), and IL28R1/IL-10R2 ( xref ; xref ) heterodimers that are activated by IL-22, IL-26, and IL-28a,b/IL29, respectively."
sparser
"The interaction between IL10RB, IL10RA, and IL-10 has been shown to impede the secretion of many cytokines, including IL-6 ( xref )."
sparser
"In mammals IL-10 interacts with a single-receptor complex composed of IL-10R1 and IL-10R2."
sparser
"IL-10 binds to a heterodimeric IL-10 receptor complex consisting of the constitutively-expressed IL-10R2 subunit and the activation-induced IL-10R1 subunit."
sparser
"Sequential assembly of IL10 with IL10RA and IL10RB engages the Janus tyrosine kinases Jak1 and Tyk2, which are associated with IL10RA and IL10RB respectively."
sparser
"The structure of the human IL-10-IL-10R1 complex interacting with two IL-10R2 chains has been predicted [ xref , xref ]."
sparser
"A model for binding of IL-10 to IL-10R1 and IL-10R2 has been proposed recently based on site-directed mutagenesis experiments xref , updating the previously published model of the ternary IL-10/IL-10R1/IL-10R2 complex xref ."
sparser
"Based on the details of the ternary complexes of IL-10R2 with CMV IL-10 and IL-10R1, 28 it would appear that the glycosylation sites are not in a position to interfere with the formation of the ternary complex."
sparser
"We know that in the IL-10 pathway, upon binding of IL-10 to cell receptors IL10RA and IL10RB, the IL-10 receptor complex members JAK1 and Tyk2 are activated and catalyze phosphorylation of themselves and then of IL10RA[ xref , xref ], thereby forming a docking site for STAT3."
sparser
"It has been shown that IL-10 initially binds to its signaling receptor IL-10R1 (IL-10Rα) and that this interaction changes the cytokine conformation by allowing the association of the IL-10IL-10R1 (IL-10Rα) complex with IL-10R2 (IL-10Rβ) [ xref ]."
sparser
"IL-10 signaling transduction occurs through binding of IL-10 to its receptors IL10RA and IL10RB to form a complex, with downstream molecules, Jak1 and Tyk2, activating STAT3[ xref , xref ]."
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sparser
"Epistatic interaction of the IL-10 gene with the IL-10 signaling pathway genes, IL10RB and HO1, in pediatric IBD."
sparser
"The specific findings include the following: (1) IL-10 rs3024496 is identified to be associated with pediatric IBD; (2) an aa interaction was found between IL-10 SNPs rs3024496 and rs1800872; (3) the SNP-SNP interaction in the IL-10 gene affects its action with the IL-10 receptor IL10RA ; (4) the IL-10 signaling pathway genes IL10RB and HO1 together are significantly associated with pediatric IBD via SNP-SNP interaction; and (5) a significant association of the three genes, IL-10 , IL10RB and HO1 , with pediatric IBD was identified from epistatic interaction analysis among three SNPs."
IL10 activates IL10RB.
2 15 | 4
IL10 activates IL10RB. 19 / 19
2 13 | 4
reach
"IL-10 signals through a receptor complex consisting of two IL-10R1 and two IL-10R2 subunits, which then triggers STAT3 phosphorylation at tyrosine 705 and serine 727 via the phosphorylation of the cytoplasmic tails of IL-10R1 and IL-10R2 driven by JAK1 and Tyk2, respectively."
reach
"IL-10 increased Il10rb only in rat."
reach
"THP-1 macrophages transfected with either unspecific control siRNA or IL10RB specific siRNA were cultivated in different media after transfection and treated with IL10."
signor
"Functionally active il-10 receptors are composed of two distinct subunits. The il-10 receptor ? Chain is a 110-kda polypeptide that plays the dominant role in mediating high affinity ligand binding and signal transduction. The il-10 receptor ? Subunit (also known as crf2_4) is predicted to be a 40-kda polypeptide that is largely required only for signaling."
reach
"In turn, IL-10 secreted by Th1 and T cells stimulate IL-10R1 and IL-10R2 on Kupffer cells and macrophages, causing their prolonged activation."
signor
"The il-10r2 chain is ubiquitously expressed, whereas the il-10 activity is restricted mainly to cells of hematopoietic origin (35, 36). This raised the question of why the second chain of the il-10 receptor complex is widely expressed when its function was required only in limited cellular subsets. One hypothesis is that the il-10r2 chain is shared by receptors for ligands other than il-10"
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IL10 activates IL10RB bound to IL10RA. 2 / 2
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FN1 affects ITGB1
5 2 2 44 | 4 1
FN1 binds ITGB1.
4 1 2 24 | 4 1
4 2 23 | 2
sparser
"Blockade of the FN-integrin interaction with a CD29 neutralizing antibody or the RGD peptide attenuated exosome-induced HSC AKT phosphorylation and migration."
sparser
"Furthermore, FN1, ITGB1 and MMP9 may be associated with metastasis of tumor cells."
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bel
"Furthermore, the chemokine SDF-1alpha, the ligand of CXCR4, triggered modulation of beta(1) integrin-dependent melanoma cell adhesion to fibronectin."
hprd
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bel
"The data in Figure 1D suggested that a second aV integ- rin, aVb5, which has been implicated in angiogenesis, may also be activated by VEGF165. Therefore, we sought concento determine if still other integrins implicated in angio- genesis, a5b1, a fibronectin receptor (Bloch et al., 1997), and a2b1, a collagen receptor (Senger et al., 1997), might be activated by VEGF165. In cell migration assays, VEGF165 markedly stimulated HUVEC movement onto effibronectin (see Figure 3A). The migrating cells exhibited extensive spreading, much more so than for their aVb3- mediated migration onto vitronectin (see Figure 2A). shown in Figure 3B, VEGF165-enhanced migration was only partly dependent upon aVb3 activation (partial inhi- bition by c7E3) and partly dependent upon a5b1; mAb JBS5 to a5b1 produced marked inhibition. The combina- tion of mAbs c7E3 and JBS5 produced full inhibition cell migration. Thus, integrin a5b1 also can be activated tranwhen HUVECs are stimulated with VEGF165. A similar conclusion was reached with regard to VEGF165 activa- tion of integrin a2b1 using Type I collagen as a matrix (Figure 3C). The role of a2b1 in this migration was con- firmed using blocking mAb BHA2.1. Taken together, these data provide evidence that the VEGF165 can acti- vate the major integrins, aVb3, aVb5, a5b1, and a2b1, implicated in angiogenesis."
bel
"The data in Figure 1D suggested that a second aV integ- rin, aVb5, which has been implicated in angiogenesis, may also be activated by VEGF165. Therefore, we sought concento determine if still other integrins implicated in angio- genesis, a5b1, a fibronectin receptor (Bloch et al., 1997), and a2b1, a collagen receptor (Senger et al., 1997), might be activated by VEGF165. In cell migration assays, VEGF165 markedly stimulated HUVEC movement onto effibronectin (see Figure 3A). The migrating cells exhibited extensive spreading, much more so than for their aVb3- mediated migration onto vitronectin (see Figure 2A). shown in Figure 3B, VEGF165-enhanced migration was only partly dependent upon aVb3 activation (partial inhi- bition by c7E3) and partly dependent upon a5b1; mAb JBS5 to a5b1 produced marked inhibition. The combina- tion of mAbs c7E3 and JBS5 produced full inhibition cell migration. Thus, integrin a5b1 also can be activated tranwhen HUVECs are stimulated with VEGF165. A similar conclusion was reached with regard to VEGF165 activa- tion of integrin a2b1 using Type I collagen as a matrix (Figure 3C). The role of a2b1 in this migration was con- firmed using blocking mAb BHA2.1. Taken together, these data provide evidence that the VEGF165 can acti- vate the major integrins, aVb3, aVb5, a5b1, and a2b1, implicated in angiogenesis."
bel
"The data in Figure 1D suggested that a second aV integ- rin, aVb5, which has been implicated in angiogenesis, may also be activated by VEGF165. Therefore, we sought concento determine if still other integrins implicated in angio- genesis, a5b1, a fibronectin receptor (Bloch et al., 1997), and a2b1, a collagen receptor (Senger et al., 1997), might be activated by VEGF165. In cell migration assays, VEGF165 markedly stimulated HUVEC movement onto effibronectin (see Figure 3A). The migrating cells exhibited extensive spreading, much more so than for their aVb3- mediated migration onto vitronectin (see Figure 2A). shown in Figure 3B, VEGF165-enhanced migration was only partly dependent upon aVb3 activation (partial inhi- bition by c7E3) and partly dependent upon a5b1; mAb JBS5 to a5b1 produced marked inhibition. The combina- tion of mAbs c7E3 and JBS5 produced full inhibition cell migration. Thus, integrin a5b1 also can be activated tranwhen HUVECs are stimulated with VEGF165. A similar conclusion was reached with regard to VEGF165 activa- tion of integrin a2b1 using Type I collagen as a matrix (Figure 3C). The role of a2b1 in this migration was con- firmed using blocking mAb BHA2.1. Taken together, these data provide evidence that the VEGF165 can acti- vate the major integrins, aVb3, aVb5, a5b1, and a2b1, implicated in angiogenesis."
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FN1 binds ITGB1 bound to ITGA5. 1 / 1
1 |
signor
"We have developed a cell-free assay for binding of solubilized beta1 integrins to their physiologically relevant ligands using an electrochemiluminescent detection method|Binding was clearly optimal for the presumed physiological ligands, i.e., collagen IV for a1b1, collagen I for a2b1, VCAM-Ig for a4b1, fibronectin (the 120-kDa cell attachment fragment was used) for a5b1, and laminin for a6b1."
| 1
reach
"Our data thus suggest that ECM proteins bind to different receptors on B-1b cells.Data in the literature show that binding of fibronectin to RGD receptor induces the AP-1 transcription factor involved in IL-2 transcription in lymphocytes, enhancing the proliferation [28]."
SDC4 binds FN1 and ITGB1. 1 / 1
| 1
sparser
"TG2 can also act as an adhesion molecule via its interactions with fibronectin (FN), syndecan-4 (SDC4) and integrin beta-1 (ITGB1) [ xref , xref , xref ]."
FN1 binds ITGAV and ITGB1. 1 / 1
1 |
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FN1 binds ITGB1 and SPP1. 1 / 1
| 1
sparser
"The proteins Itgb1, Spp1, Lgals1, and Fn1 formed the second ranked cluster (Cluster 2) as depicted in xref ."
FN1 activates ITGB1.
1 1 20 |
FN1 activates ITGB1. 20 / 20
20 |
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1 |
signor
"We have developed a cell-free assay for binding of solubilized beta1 integrins to their physiologically relevant ligands using an electrochemiluminescent detection method|Binding was clearly optimal for the presumed physiological ligands, i.e., collagen IV for a1b1, collagen I for a2b1, VCAM-Ig for a4b1, fibronectin (the 120-kDa cell attachment fragment was used) for a5b1, and laminin for a6b1."
FN1 bound to ITGB1 activates ITGB1. 1 / 1
1 |
bel
"Therefore, in order to understand the mechanisms by which integrins prevent apoptosis in leukemia B cells, we compared the temporal gene expression profiles induced by beta1-integrin ligation with fibronectin (Fn) or adhesion by poly-L-Lysine in serum-starved precursor B leukemia cells."
SIRPA affects CD47
12 | 38
12 | 27
sparser
"Confocal imaging revealed that the treatment with anti-SIRPα-AK750 completely inhibited the SIRPα-CD47 binding unlike the control IgG-AK750 supramolecules ( xref )."
sparser
"This presents the possibility of cross-talk between the two pathways, in which CD47 binds SIRPα, leading to an increase in MMPs."
sparser
"After intraplaque hemorrhage, a bulk of RBCs is deposited and degraded over days by macrophage phagocytosis activity through PS-receptors or natural occurring antibodies toward Band 3 or CD47-SIRP α interaction [ xref – xref ] as a part of a defence mechanism against oxidative burden, and this event promotes atherosclerotic lesion instability [ xref , xref ]."
sparser
"In this study, we show that SIRPalpha1 directly binds to the immunoglobulin variable domain loop of purified human CD47 and that such SIRP-CD47 interactions regulate PMN transmigration."
sparser
"Binding of the N-terminal immunoglobulin superfamily (IgSF) V-set domain of SIRPα (SIRPα d1) to the single IgSF domain of CD47 is mediated by the loops of the SIRPα IgSF domain, analogous to the interactions mediated by antigen receptors, albeit involving only a single domain ( xref , xref )."
sparser
"SIRPα binding to the extracellular immunoglobulin (Ig) domain of CD47 is conserved and species specific, with sequence homology between mice and humans in this region differing by 38% [ xref ]."
sparser
"The N-terminal immunoglobulin superfamily (IgSF) domain of SIRPα (d1) interacts with the single IgSF domain of CD47, a widely distributed membrane protein."
sparser
"On the other hand, since the interaction between neuronal CD47 and microglial SIRP-α results in the inhibition of microglia [ xref ], the inefficient CD47/SIRP-α interaction between misshapen cells and microglia within the epileptogenic lesions may conduce to microglial activation, which abundantly occurs in epileptogenic lesions of FCD IIb and TSC and is thought to perpetuate and prolong the inflammation [ xref , xref – xref ]."
sparser
"To overcome tolerability and “antigen sink” issues arising from widespread CD47 expression, we generated dual-targeting bispecific antibodies that selectively block the CD47-SIRPα interaction on malignant cells expressing a specific tumor-associated antigen; e.g., CD19 or mesothelin."
sparser
"Moreover, by combining the recruitment and activation of FcRs via the antibody Fc domain and the blockade of CD47-SIRPα interaction by the endogenous low affinity CD47-antagonistic SIRPα domain, licMAB molecules significantly enhanced phagocytosis of tumor cells."
sparser
"When SIRPα binds with CD47 through the Ig-like domains in its N-terminal region, signaling through SHP-1 or SHP-2 is activated in a phosphorylation-dependent manner, followed by a panel of different downstream signaling events ( xref – xref )."
sparser
"While, it is clear that innate immunity represents a major barrier to tolerogenesis in allotransplantation, this phenomenon is presumably even more relevant to xenotransplantation due to the involvement of natural antibodies, CD47/SIRPα-mediated interactions, and presumably many other still unknown factors."
sparser
"SIRPα-CD47 interaction is served as a “don't eat me” and “self-recognized” signaling and it could be a therapeutic target for human tumors [ xref , xref – xref ]."
sparser
"Humanized anti-CD47 antibody, Hu5F9-G4, blocked CD47-SIRPα interactions efficiently and demonstrated high therapeutic efficacy in vitro and in patient-derived xenograft models of group 3 MBs."
sparser
"We describe here the crystal structure of the full three-domain extracellular region of SIRPα, revealing that the topology of the CD47-SIRPα interaction is compatible with productive engagement occurring when cells come together in synapse-like contacts."
sparser
"Although further studies in xenogeneic settings are needed to reach a conclusion, it is likely that DST will be less efficient in suppressing xenoresponses in a transplant setting when the donor CD47 does not interact with the recipient SIRPα."
sparser
"The enhanced in vivo circulation of CD47-Lenti is therefore due to a CD47-SIRPA interaction."
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sparser
"Nonetheless, these macrophages can mount robust responses against cancer when given the appropriate antibody stimulus. xref Macrophages fail to recognize tumor cells as foreign due at least in part to the CD47-SIRPα interaction, a myeloid-specific immune checkpoint."
sparser
"SIRPα binding to the Ig extracellular domain of its cognate ligand, CD47, prevents CD47 expressing cells from being targeted by inflammatory cells [ xref - xref ]."
sparser
"The human sequence of SIRP-alpha's N-terminal Ig domain, which binds CD47, differs from mouse by 34%, whereas the human sequence of CD47's lone Ig domain differs from mouse by almost 50%."
sparser
"Signal regulatory protein α (SIRP α ), a transmembrane protein that is predominantly expressed in dendritic cells (DCs) or macrophages, interacts with CD47 that is overexpressed in almost all types of tumor cells."
sparser
"NOD-SIRPα reportedly binds human CD47 65-fold more tightly than human SIRPα [ xref ]."
sparser
"Human CD47 binds to thrombospondins, SIRPα and SIRPγ."
sparser
"The interaction between CD47 and SIRPα, which are both members of the superfamily of immunoglobulins, also plays a role in the immunological recognition of “self” to prevent macrophage phagocytosis [ xref ]."
sparser
"From the identified DEPs, we confirmed five cell-surface receptors by flow cytometry: SIRPα and Siglec-9, which bind to CD47 and sialic acids, respectively, were found to be highly expressed on both CD16+ monocytes and CD1c+ mDCs."
sparser
"In the context of in vitro migration into fibrillar collagen I, SIRPα on the migrating macrophages can not be ligated by extracellular CD47 essentially, suggesting regulation of interstitial amoeboid migration by either cis CD47-SIRPα interactions or by ligand-independent SIRPα signaling."
sparser
"Here, inhibiting cis interactions between SIRPα and CD47 on the same macrophage increases eating approximately the same as inhibiting trans interactions."
| 10
sparser
"TSP-1 and SIRP-α bind CD47 IgV loop xref and TSP-1 can inhibit SIRP-α-Fc binding to CD47 expressing-Jurkat cells xref ."
sparser
"The binding of CD47 to either SIRPα or TSP1 provides two anticancer strategies."
sparser
"Given recent insights into the physiological functions of CD47, potential side effects of therapeutic CD47-antibodies such as B6H12, which inhibits both CD47-SIRP and CD47-TSP1 interactions, include altered blood pressure [ xref ], hemolytic anemia, and prothrombotic or antithrombotic activities [ xref , xref ]."
sparser
"Interestingly, both TSP-1 and SIRPα are interacting with CD47 during synaptogenesis xref , xref , xref , xref , which means that other mechanisms appear to be involved in CD47-dependent regulation of the type of nerve fiber growth investigated in the present study."
sparser
"Notably, the widely used CD47 blocking antibody B6H12 inhibits binding of both SIRPα and TSP1 to cell surface CD47 ( xref )."
sparser
"However, CD47 modified nanoparticles showed a prominent anti-phagocytosis property in M1 cells that may in part be due to the complex signalling interactions of CD47 with SIRPα and TSP-1."
sparser
"One approach to avoid these shortcomings is to identify and develop small molecule molecular probes and pretherapeutic agents that would (1) selectively target SIRPα or TSP1 interactions with CD47, (2) provide a route to optimize pharmacokinetics, reduce on-target toxicity and maximize tissue penetration, and (3) allow more flexible routes of administration."
sparser
"This data is consistent with competitive binding of TSP1 and SIRPα to a single site on CD47, steric inhibition of binding to distinct but proximal sites, or allosteric inhibition ( xref )."
sparser
"Thus, we propose that treatment of tumor-bearing animals with CD47 blocking antibodies, which are known to inhibit both SIRPα and TSP1 binding to CD47, could directly modulate adaptive as well as innate anti-tumor immunity."
sparser
"Indeed, CD47 antibody targeting may affect NO pathway modulation and subsequent angiogenesis regulation, since a commonly used CD47-blocking antibody (clone B6H12) was previously shown to concomitantly disrupt both TSP-1:CD47 and CD47:SIRPα interactions ( xref )."
CD47 binds SIRPA and SIRPA. 1 / 1
| 1
sparser
"Sirpa -human CD47/mouse CD47-human SIRP-α interaction."
OSM affects LIFR
1 26 | 9 10
OSM binds LIFR.
13 | 6 7
13 | 4 7
sparser
"More specifically, signaling through the OSMR was associated with early stromal cell lineage commitment towards OBs through up-regulation of C/EBPβ and C/EBPδ whereas OSM action through LIFR was associated with inhibition of sclerostin expression in osteocytes."
sparser
"Oncostatin M binds the high-affinity leukemia inhibitory factor receptor."
reach
"Both LIF and OSM can bind to the LIFR."
reach
"Receptor components gp130, LIFR and OSMR that bind OSM are expressed by bone marrow osteoblastic cells, OB cell lines as well as mouse calvaria OBs, bone lining cells and osteocytes XREF_BIBR, XREF_BIBR."
reach
"Human OSM can bind to either the type I receptor complex consisting of gp130 and the LIFR (gp130 and LIFRbeta) [35] or the type II receptor complex consisting of gp130 and the OSMR (gp130 and OSMRbeta) [38]."
reach
"Competition binding studies demonstrate that OSM binds to the LIF receptor on MBL-5 ES cells."
reach
"In a cell-type dependent manner, OSM activates several signaling cascades including the JAK and STAT, MAPK and NF-kappaB pathways by binding to the gp130 and LIFR or gp130 and OSMRbeta complex."
reach
"The inability of OSM to completely block the binding of LIF is probably due to the presence of the alpha subunit of the LIF receptor on these cells which binds LIF with low affinity but does not bind OSM.33 Although the binding studies on the murine MBL-5 cells show that human OSM binds the murine high affinity LIF receptor with a five-fold lower affinity than human LIF, it is interesting that our culture experiments consistently showed that OSM and LIF were equipotent in maintaining the MBL-5 cells in an undifferentiated state."
reach
"OSM can bind to either OSMR : gp130 or LIFR : gp130 heterodimeric receptors."
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
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omnipath
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omnipath
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omnipath
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omnipath
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omnipath
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omnipath
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omnipath
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omnipath
No evidence text available
sparser
"Both LIF and OSM can bind to the LIFR."
sparser
"Both LIF and OSM bind to the LIFR."
LIFR binds OSM and OSMR. 2 / 2
| 2
sparser
"This loop is located near the "FXXK" motif in active site III, which is essential for OSM's binding to both LIFR and OSMR."
sparser
"Shortening of the loop enhanced OSM's interaction with OSMR and LIFR as shown by kinetic and equilibrium binding analysis, suggesting the loop may hinder receptor interactions."
OSM activates LIFR.
1 13 | 3 3
OSM activates LIFR. 20 / 20
1 13 | 3 3
reach
"gp130 and OSMR is activated only by OSM, but gp130 and LIFR can be activated by either LIF, OSM or both."
signor
"Oncostatin m binds the high-affinity leukemia inhibitory factor receptor"
reach
"Similarly, human OSM only activates gp130 and OSMRbeta and not LIFR in human adipocytes."
sparser
"Activation of the LIFR by OSM promotes bone growth and may also suppress breast cancer metastatic phenotypes [ xref , xref ]."
sparser
"11 The receptor for OSM includes gp130 and a specific chain, OSMR; in human, but not in mouse, OSM also activates LIF receptor complexes."
sparser
"In mouse cells, only mouse OSM is capable of activating the mouse OSM receptor; human OSM instead activates the LIF receptor."
reach
"gp130 and LIFR can be activated by LIF or OSM, but gp130 and OSMR is activated by OSM only."
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
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omnipath
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omnipath
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omnipath
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omnipath
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omnipath
No evidence text available
omnipath
No evidence text available
OSM affects IL6ST
1 1 21 | 9 13
OSM binds IL6ST.
1 11 | 4 6
1 10 | 4 6
sparser
"Oncostatin M receptor β forms the oncostatin M-specific type II receptor complex with gp130 ( Tanaka et al., 1999 )."
sparser
"Indeed, functional studies in a GnRH-expressing cell line and in primary hypothalamic neuronal cells show that upon binding to gp130, IL-6 or oncostatin M can activate the MAPK and ERK 1/2 intracellular signaling cascade and lead to increased expression of early regulatory genes including c-fos (marker of neuronal activation), transcription factor Egr-1 (early growth response-1, regulator of cell proliferation and programmed cell death), or GADD45 γ (regulator of genomic stability and of growth arrest) [ xref ]."
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
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omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
reach
"In contrast, OSM binds gp130 with low affinity but has little to no biological activity unless a second receptor chain is recruited, either the LIFRbeta or the more highly specific OSMRbeta [XREF_BIBR - XREF_BIBR]."
reach
"Following OSM binding to OSMR and gp130, JAK2 is phosphorylated, which in turn phosphorylates STAT3 permitting nuclear translocation and modulation of gene expression [XREF_BIBR, XREF_BIBR, XREF_BIBR]."
reach
"Other mediators, like interleukin-11 (IL-l l), leukaemia inhibitory factor (LIF) or oncostatin-M (OM) also bind to gp130 and use this molecule as signal transducer (Kishimoto 1992)."
reach
"Murine OSM on the other hand only binds to the gp130 and OSMR (type II) receptor complex with high affinity."
biogrid
No evidence text available
sparser
"Binding of OSM to its receptor and gp130 results in recruitment of JAK2 to the receptor complex and subsequent recruitment and phosphorylation of STAT3."
reach
"Only OSM could directly binds to gp130."
sparser
"Interestingly, gp130 binds directly to OSM, whereas complex formation with the other cytokines depends on additional receptor subunits."
reach
"In a cell-type dependent manner, OSM activates several signaling cascades including the JAK and STAT, MAPK and NF-kappaB pathways by binding to the gp130 and LIFR or gp130 and OSMRbeta complex."
IL6ST binds OSM and OSMR. 1 / 1
1 |
omnipath
No evidence text available
OSM activates IL6ST.
1 10 | 3 5
OSM activates IL6ST. 19 / 19
1 10 | 3 5
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
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omnipath
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omnipath
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omnipath
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omnipath
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omnipath
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omnipath
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omnipath
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sparser
"In the AGM culture system, supplementation of OSM, which activates gp130, has been shown to be indispensable in addition to bFGF and SCF [12] ."
reach
"gp130 and LIFR can be activated by LIF or OSM, but gp130 and OSMR is activated by OSM only."
sparser
"OSM also activates gp130, either via its own OSM receptor (OSMRβ) subunit or via LIFR ( xref )."
sparser
"Using a dominant-negative LIF mutant (hLIF-05), we showed that in RC cell cultures mouse OSM (mOSM) activates exclusively glycoprotein 130 (gp130)/OSMR."
reach
"Apart from IL-6, other gp130 activators such as LIF, OSM and CNTF can also induce astrogliosis (Damiani and O'Callaghan, 2007; Sriram et al., 2004)."
reach
"Using a dominant negative LIF mutant (hLIF-05), we showed that in RC cell cultures mouse OSM (mOSM) activates exclusively glycoprotein 130 (gp130)/OSMR."
reach
"On the molecular level this usage of OSM from different species results in the stimulation of different receptor complexes : human OSM exclusively binds to the type I gp130 and LIFR system in mouse cells; murine OSM, however, exclusively activates the type II gp130 and OSMR system."
reach
"LIFR and gp130 can be activated by either LIF or OSM, but OSMR and gp130 is activated only by OSM [18]."
signor
"Stimulation of cells with the interleukin-6 family of cytokines triggers homo- or hetero-dimerization of gp130. The dimerization of gp130 leads to activation of associated cytoplasmic tyrosine kinases and subsequent modification of transcription factors. Some of these biological activities of il-6 are also often exerted by other cytokines, i.e. Il-11, lif, osm, cntf, and ct-2."
OSM phosphorylates IL6ST.
| 2 2
OSM phosphorylates IL6ST. 2 / 2
| 2
sparser
"Attempts to identify potential components revealed that CNTF, LIF, and OSM did indeed induce gp130 tyrosine phosphorylation; furthermore, gp130 could be isolated in complexes with either CNTF or LIF, and blocking antibodies to gp130 inhibited responses to CNTF and LIF as well as to OSM (Ip et al., 1992; Taga et al., 1992)."
sparser
"Our results demonstrate that both LIF and OSM cause tyrosine phosphorylation and activation of the gp130."
OSM phosphorylates IL6ST on tyrosine. 2 / 2
| 2
reach
"These results have been confirmed, and since there is some receptor cross-talk among gp130 cytokines [XREF_BIBR], it is critical to note that that mouse OSM only results in the tyrosine phosphorylation of gp130 and OSMRbeta and does not signal via LIFR [XREF_BIBR, XREF_BIBR, XREF_BIBR]."
reach
"Attempts to identify potential components revealed that CNTF, LIF, and OSM did indeed induce gp130 tyrosine phosphorylation; furthermore, gp130 could be isolated in complexes with either CNTF or LIF, and blocking antibodies to gp130 inhibited responses to CNTF and LIF as well as to OSM (Ip et al., 1992; Taga et al., 1992)."
TNF affects TLR4
4 | 31 1
TNF binds TLR4.
| 31 1
| 25 1
sparser
"To investigate whether TLR4 associated with IL-1 β and TNF- α expression induced by LPS, we pre-treated SFs with TAK-242 (1  μ M) for 2 h prior to LPS exposure."
sparser
"Of the several isoforms of protein kinase C, protein kinase C epsilon (PKCε) is the PKC isoform ( xref ) that is associated with the Toll-like receptor 4, IL-12, and TNF-α mediated immune and inflammatory responses ( xref )."
sparser
"The basal up-regulation of TLR4 expression associated with endogenous high TNF-α and IL-12p70 production by monocytes from preeclamptic women confirms the activated profile of these cells by the disease process."
sparser
"Moreover, therapeutic effects of Gal-LipoNP TLR4 siRNA were associated with suppression of the inflammatory cytokines IL-1 and TNF-α."
sparser
"Hepatic TLR2, TLR4 and TNF-α mRNA are associated with hepatic inflammation in both HCV and HCV/HIV infection."
sparser
"Furthermore, the association of TLR2 and TLR4 with TNF-α production was most apparent in patients with active VL as the agonists stimuli increased production compared with the other groups."
sparser
"Melanoma growth was associated with a significant reduction in TNF-α, TLR-2 and TLR-4 mRNA expression in peritoneal macrophages compared to that in control mice ( P  < 0.05)."
sparser
"This decrease in TNF-α levels was not associated with a reduction in cell surface expression of CD14 and Toll-like receptor 4."
sparser
"In this work, further analysis showed that the addition in multivariable regression models of percent monocytes and lymphocytes did not modify the associations of DNA methylation of CD14, TLR4 and TNF-α."
sparser
"Endotoxin release in a compromised gut triggers an inflammatory cascade following binding to TLR4 and CD14 which results in the upregulation of TNFα expression ( xref )."
sparser
"To further understand the mechanism of action of the Fcgr3-rs, we then investigated how the Fcgr3 and Fcgr3-rs interact with TLR4-mediated TNFα production following LPS stimulation."
sparser
"Also, in mice, during experimental OM, persistent inflammatory responses of TLR2 –/– and TLR4 –/– mice were associated with an initial lack of induction of TNF after infection [ xref ]."
sparser
"The TLR4 +896 and TNF-alpha -308 polymorphisms were significantly associated with an increased risk for severe sepsis following burn trauma."
sparser
"Impaired TLR4-induced TNF production was associated to the lack of intracellular dynamin-dependent TLR-4 receptor trafficking to perinuclear regions in BMMCs, a diminished ERK1/2 and ELK-1 phosphorylation, and a decrease in c-fos and TNF mRNA accumulation."
sparser
"Down-regulation of TLR-4 by TNF-alpha is associated with LPS hyporeactivity for NF-kappaB formation, whereas upregulation of TLR-4 via IL-6 can increase the responsiveness of mononuclear phagocytes."
sparser
"The TNF superfamily member 4-1BBL physically interacts with TLR4."
sparser
"In the patient group, TNFA promoter genotypes -238 G/G and -376 G/G and the TLR4 299 A/A genotype were associated with an otitis-prone condition."
reach
"These macrophages had decreased SM content in their cells and have reduced recruitment of TLR4 and TNF receptor to the cellular membrane."
sparser
"Polymorphisms TNF-A-308G/A, IL-8-251A/T, TNF-B + 252A/G and TLR4 + 1196C/T were not associated with risk of any gastric lesion."
sparser
"These findings suggest that the expression of TNFA was mainly associated with TLR4 expression in BOECs under various experimental conditions."
sparser
"The expression of TLR4 was associated with the mRNA expression of TNFA (under physiological or pathophysiological + physiological conditions), IL4 (under physiological conditions), and IL1B (under pathophysiological conditions)."
sparser
"In order to define if the inhibitory effects of SB203850 on LPS-induced IL-1 β, IL-6 , TNF -α and TLR-4 transcription could be exclusively associated to LITAF activity or if it could be the result of LITAF interaction with the master pro-inflammatory transcription factor NF-ĸB, we performed in vitro experiments on LX-2 cells with sulfasalazine (SZA)."
sparser
"Data revealed that the TNFA expression was associated with the co-expression of TLR4 and IL4 under physiological conditions."
sparser
"We found that the expression of TLR4 was associated with the co-expression of TNFA and IL4 under both basic and physiological conditions."
sparser
"Of relevance, recent work shows that in lipopolysaccharide-stimulated mouse macrophages, TLR4 interacts initially with MyD88 to mediate the early phase TNF expression and then with the newly induced 4-1BBL to sustain longer term TNF production xref ."
sparser
"TLR1, TLR4 (1 of 4 SNPs) and TNF (1 of 4 SNPs) interacted with cigarette smoking."
TLR4 binds TNF and IL10. 3 / 3
| 3
sparser
"Moreover, using the co-expression data of gene pairs, the data showed that the co-expression of IL1B and TNFA (under pathophysiological conditions), the co-expression of TNFA and IL4 (under physiological conditions), and the co-expression of TNFA and IL10 (under pathophysiological + physiological conditions) was strongly associated with TLR4 expression."
sparser
"The results showed that TNFA ( d  = 0.61) and TLR4 ( d  = 0.34) were negatively associated with IL10 expression under basic conditions ( P  < 0.05)."
sparser
"Failure otitis media recovery in TLR2 −/− and TLR4 −/− mice is associated with decreased TNF and enhanced IL-10 expression, suggesting that abnormalities of innate immunity may contribute to otitis media in humans and that innate immune pathways could be targets of otitis media therapy."
TLR4 binds TNF and TNF. 1 / 1
| 1
sparser
"TLR4 expression was associated with TNF-α and TNF-β expression (p = 0.016 and p = 0.025, respectively) in these 2 groups."
TLR4 binds TNF and IL1B. 1 / 1
| 1
sparser
"The second principal component indicates that the high expression of TLR-4 was associated with high expression of pro-inflammatory cytokines TNF-α and IL-1β ."
TLR4 binds TNF and NR3C2. 1 / 1
| 1
sparser
"All three receptors influenced the production of IL-10, while TNF-α production was associated with expression of TLR4 and MR."
TNF increases the amount of TLR4.
3 |
Transcriptionally active TNF increases the amount of TLR4. 3 / 3
3 |
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
TNF decreases the amount of TLR4.
1 |
Transcriptionally active TNF decreases the amount of TLR4. 1 / 1
1 |
biopax:ctd
No evidence text available
MIF affects CXCR4
1 | 28 6
1 | 28 6
sparser
"In the context of atherosclerosis, interference with MIF binding to both CXCR2 and CXCR4 by using a MIF blocking antibody interfered with MIF’s pro-atherosclerotic functions (Bernhagen et al., xref ), while it would leave the protective homeostatic functions of the CXCL12-CXCR4 axis preserved (Koenen and Weber, xref )."
sparser
"To identify the MDSC MIF receptor, we evaluated two known receptors that bind MIF, CXCR2 and CXCR4."
sparser
"In addition, MIF can bind to CXCR2 and CXCR4 and lead to the proliferation of pulmonary artery smooth muscle cells and contribute to hypoxic PH xref - xref ."
sparser
"CXCR2 and CXCR4 are functional receptors of MIF; MIF binding to CXCR2 or CXCR4 triggers calcium influx, induces a rapid activation of integrins, and can subsequently mediate integrin-dependent arrest and chemotaxis of monocytes and T cells [ xref ]."
sparser
"In addition to CD74, the direct binding of MIF and CXCR2 or CXCR4 was also observed to induce calcium influx and the rapid activation of integrins by Gi-coupling [ xref ]."
sparser
"Inflammatory leukocyte recruitment is dependent on MIF-CXCR2 and MIF-CXCR4 interactions [ xref ]."
sparser
"Signaling through CD74/CD44 induces cell proliferation and inhibits apoptosis, and MIF interaction with the non-cognate receptors CXCR2 and CXCR4 modulates the migration of immune cells ( xref )."
sparser
"It has also been clearly demonstrated that MIF binding to its cognate receptors, CXCR2 and CXCR4, promotes leukocyte recruitment to the site of inflammation( xref , xref – xref )."
reach
"The CXCR2 and CXCR4 chemokine receptors also bind to MIF, an interaction that may contribute to the recruitment of inflammatory cells."
reach
"Although macrophage migration inhibitory factor and extracellular ubiquitin interact with CXCR4 as agonistic factors, CXCL12 was believed to be the sole chemokine ligand for CXCR4."
sparser
"Furthermore, MIFCXCR4 interaction increases in experimental bladder inflammation ( xref ), with PAR4-induced abdominal hypersensitivity shown to occur through MIF and at least partially also through CXCR4 on the urothelium ( xref )."
sparser
"By contrast, in the autocrine secretion by RMS cells, MIF may interact with CXCR4 and thus establish an autocrine regulatory loop."
reach
"In fact, MIF interacts with the classical chemokine receptors CXCR2 and CXCR4 [6], and also engages in binding to cell surface expressed invariant chain designated as CD74 [33]."
reach
"Therefore, we hypothesized that CXCR4 and MIF complex formation may also occur in the bladder."
sparser
"Therefore, we next asked whether an interaction between MIF and CXCR4 may be involved in MIF-stimulated activation of the JNK pathway."
reach
"The FDA approved CXCR4 antagonist AMD3100 inhibits MIF binding to CXCR4."
reach
"MIF can also bind the chemokine receptors CXCR2 and CXCR4, which are expressed on many CD74 negative cell types, linking it more closely to chronic inflammation such as artherosclerosis [XREF_BIBR]."
sparser
"In contrast, the interaction between MIF and CXCR4 remains incompletely understood."
omnipath
No evidence text available
sparser
"At the molecular level, this activity is based on a high affinity non-cognate interaction between MIF and the CXC chemokine receptors CXCR2 and CXCR4 [ xref , xref ]."
sparser
"At the molecular level, these activities are based on a non-cognate interaction between MIF and the CXC chemokine receptors CXCR2 and CXCR4."
sparser
"The dogma of a monogamous relationship between CXCR4 and CXCL12 also has been challenged by the observations that HIV gp120 and MIF bind to CXCR4 [ xref , xref , xref ]."
sparser
"MIF interacts with its main receptor CD74 and its co-receptor CXCR-4, both overexpressed, promoting cell survival by PI3K/Akt activation, a possible link with EGFR and HER2 pathways and inhibition of autophagy."
sparser
"Signaling via CXCR4 is likely to be amplified by CD74 which interacts with MIF and CXCR4 as part of a complex explaining the significant effect on migration/invasion with the CD74 blocking peptide in xref ."
sparser
"Furthermore, the formation of a MIF, CD74, and CXCR4 ligand-receptor complex was revealed by our immunofluorescence staining and coimmunoprecipitation results."
sparser
"A functional heteromeric MIF factor is formed by CD74 and CXCR4 [ xref ] and its associated protein complexes (i.e. MIF, CD44, and CXCR) regulate various signal transduction pathways during immune-mediated inflammatory conditions [ xref , xref – xref ]."
sparser
"Surprisingly, At MDLs bind to the human MIF receptors CD74 and CXCR4."
sparser
"Apart from homodimerization ( xref , xref , xref ), CXCR4 forms a functional MIF receptor complex with CD74 ( xref ) and can form heterodimers with the chemokine receptor ACKR3 (previously CXCR7), modulating CXCL12/CXCR4 signaling as will be discussed in detail below."
sparser
"In contrast, no structure-activity relationship data are available yet for the interaction between MIF and its receptors CD74 and CXCR4."
sparser
"From the IP data, we show interestingly that CD74 would interact with MIF via CXCR4, which would likely amplify the signal via this receptor."
sparser
"MIF interacted with CXCR4-CXCR7 on platelets, defining CXCR7 as a hitherto unrecognized receptor for MIF on platelets."
sparser
"For example, the MIF receptors CXCR4 and CXCR7 form a complex, thus modulating CXCL12-mediated CXCR4-dependent chemotaxis (Thelen and Thelen, xref ; Levoye et al., xref )."
sparser
"For example Tarnowski et al. [39] reported that MIF secreted by rhabdomyosarcoma cells binds to both CXCR4 and CXCR7 on these cells."
sparser
"A role for electrostatic interactions between CXCR4(1–27) and MIF-RLR is further supported by our alanine scanning and the molecular docking results."
sparser
"In addition to CXCL12-CXCR4 axis AMD3100 treatment might inhibit the interaction of CXCR4 with further ligands, MIF (macrophage migration inhibitory factor) and extracellular ubiquitin."
INHBA affects ACVR2A
2 3 1 26 | 2
INHBA binds ACVR2A.
1 3 1 19 | 2
1 3 1 11 | 2
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
signor
"A protein of 494 amino acids comprising a ligand-binding extracellular domain, a single membrane-spanning domain, and an intracellular kinase domain with predicted serine/threonine specificity. 125I-activin A binds to transfected COS cells with an affinity of 180 pM and can be competed by activin A, activin B, and inhibin A, but not by transforming growth factor beta 1."
biogrid
No evidence text available
biogrid
No evidence text available
sparser
"High expression of both INHBA and ACVR2A was associated with shorter DFS in serous cancer patients, and INHBA, ACVR1B , and ACVR2B were frequently altered in HGSOC patients."
hprd
No evidence text available
biogrid
No evidence text available
sparser
"Among them, overexpression of cancer cell–derived INHBA binding to CAF-derived ACVR2A, the receptor of INHBA ( xref ), was associated with activated Smad signaling in CAFs in the CAF-C patient group ( P < ."
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
8 |
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
INHBA activates ACVR2A.
1 7 |
INHBA activates ACVR2A. 8 / 8
1 7 |
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
signor
"A protein of 494 amino acids comprising a ligand-binding extracellular domain, a single membrane-spanning domain, and an intracellular kinase domain with predicted serine/threonine specificity. 125I-activin A binds to transfected COS cells with an affinity of 180 pM and can be competed by activin A, activin B, and inhibin A, but not by transforming growth factor beta 1."
OSM affects OSMR
1 21 | 7 4
OSM binds OSMR.
1 11 | 7 4
1 10 | 5 4
sparser
"In vivo, high expression of OSM and OSMR mRNA (determined by RT-PCR) was associated with reduced ER (P<0.01) and progesterone receptor (P<0.05) protein levels in a cohort of 70 invasive breast cancers."
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
reach
"Following OSM binding to OSMR and gp130, JAK2 is phosphorylated, which in turn phosphorylates STAT3 permitting nuclear translocation and modulation of gene expression [XREF_BIBR, XREF_BIBR, XREF_BIBR]."
sparser
"Expression profiling of OSM-treated cell lines and cervical SCC tissue identified consistent patterns of gene induction following OSM:OSMR interactions, which led to functional analyses of OSM-induced promalignant effects in cervical SCC cells ( xref )."
sparser
"Our data suggest that OSMOSMR interactions may also be responsible for inducing TGM2 in other cell types, such as breast cancer cells, in which OSM promotes cell motility and metastatic behaviour and TGM2 has been associated with migration, invasion and metastasis xref – xref ."
sparser
"The pro-malignant effects associated with OSMR overexpression are critically mediated by JAK-STAT3 activation, which is induced by exogenous OSM and also by autocrine OSM-OSMR interactions."
reach
"Binding of OSM to OSMR, which is expressed by satellite cells and interstitial cells isolated from muscle, activates JAK1/2 tyrosine kinases with subsequent STAT3 tyrosine phosphorylation and activation in vitro."
signor
"The oncostatin m receptor (osmr) is part of receptor complexes for oncostatin m and interleukin-31."
reach
"After getting the equilibrated states of the simulation system, per-residue energy contribution was calculated to characterize the important residues for the OSM and OSMR complex formation."
sparser
"As OSM:OSMR interactions are known to induce STAT3 ( xref ), we tested the importance of JAK/STAT3 signalling in the induction of EMT-related genes."
reach
"Human OSM is capable of binding not only to the OSMR but also to the LIF receptor, in contrast to murine OSM that only binds to the OSMR [XREF_BIBR]."
LIFR binds OSM and OSMR. 2 / 2
| 2
sparser
"This loop is located near the "FXXK" motif in active site III, which is essential for OSM's binding to both LIFR and OSMR."
sparser
"Shortening of the loop enhanced OSM's interaction with OSMR and LIFR as shown by kinetic and equilibrium binding analysis, suggesting the loop may hinder receptor interactions."
IL6ST binds OSM and OSMR. 1 / 1
1 |
omnipath
No evidence text available
OSM activates OSMR.
10 |
OSM activates OSMR. 10 / 10
10 |
omnipath
No evidence text available
omnipath
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omnipath
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omnipath
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omnipath
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omnipath
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omnipath
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omnipath
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omnipath
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omnipath
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FN1 affects ITGAV
1 1 21 | 5 3
FN1 binds ITGAV.
1 1 12 | 5 3
1 9 | 4 3
sparser
"Another MP marker, CD51 (integrin αV) forms several complexes which bind fibronectin and vitronectin and regulates vascular structure and stability [ xref ]."
reach
"In the NSR and Rod PPC dataset (XREF_TABLE), canonical interactions lead to activation when fibronectin (FN1) binds to alpha-integrin (ITGAV) and RAC1."
sparser
"FN-1 rs6725958C/A and ITGAV rs10174098A/G SNPs were only associated with knee OA when both study groups were combined."
biogrid
No evidence text available
reach
"FN1 and SPP1 bind to ITGAV through a RGD containing domain, so their interaction can be blocked by a synthetic peptide GRGDS [XREF_BIBR, XREF_BIBR]."
reach
"Fibronectin binds to the ITGAV specifically with high affinity, and this interaction is biologically relevant in supporting cell adhesion to matrix proteins [XREF_BIBR]."
sparser
"Fibronectin binds to the ITGAV specifically with high affinity, and this interaction is biologically relevant in supporting cell adhesion to matrix proteins [ xref ]."
omnipath
No evidence text available
omnipath
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omnipath
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omnipath
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omnipath
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omnipath
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omnipath
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omnipath
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omnipath
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sparser
"As ITGA5 is required for hESC binding to FN and ITGAV, and ITGB5 are required for binding to VTN, xref we investigated the expression levels of these integrin subunits as hESCs differentiate to DE."
FN1 binds ITGAV and ITGB6. 2 / 2
1 1 |
hprd
No evidence text available
omnipath
No evidence text available
FN1 binds ITGAV and SPP1. 1 / 1
| 1
sparser
"FN1 and SPP1 bind to ITGAV through a RGD-containing domain, so their interaction can be blocked by a synthetic peptide GRGDS [ xref , xref ]."
FN1 binds ITGAV and ITGB1. 1 / 1
1 |
omnipath
No evidence text available
FN1 binds ITGAV and ITGB3. 1 / 1
1 |
omnipath
No evidence text available
FN1 activates ITGAV.
9 |
FN1 activates ITGAV. 9 / 9
9 |
omnipath
No evidence text available
omnipath
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omnipath
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omnipath
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omnipath
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omnipath
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omnipath
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omnipath
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omnipath
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INHBA affects ACVR1B
28 |
INHBA binds ACVR1B.
22 |
14 |
omnipath
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omnipath
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omnipath
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omnipath
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omnipath
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omnipath
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omnipath
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omnipath
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omnipath
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omnipath
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omnipath
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omnipath
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omnipath
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omnipath
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8 |
omnipath
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omnipath
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omnipath
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omnipath
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omnipath
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omnipath
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omnipath
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omnipath
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INHBA activates ACVR1B.
6 |
INHBA activates ACVR1B. 6 / 6
6 |
omnipath
No evidence text available
omnipath
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omnipath
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omnipath
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omnipath
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omnipath
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FN1 affects SDC4
1 | 21 6
FN1 binds SDC4.
| 20 3
| 19 3
sparser
"Strong expression of SDC4 or FN was associated with significantly shorter overall survival, respectively. [corrected] Increased expression of SDC4 and FN may be underlying molecular alteration of osteosarcoma which accounts for more aggressive clinical behaviour."
sparser
"In both cases, tenascin-C acts by blocking the interaction of fibronectin with cell-surface syndecan-4 (Huang et al. xref ; Midwood et al. xref ) by binding directly to FNIII13 in the HepII domain of fibronectin (Huang et al. xref )."
reach
"In particular, syndecan-4 binds the major heparin binding site of fibronectin and acts coordinately with integrins such as alpha5beta1 in the assembly of focal adhesions (Woods et al. 1993; Couchman and Woods 1999; Longley et al. 1999; Saoncella et al. 1999)."
reach
"We find that although Rac1, RhoA, RhoG and Arf6 are each regulated by the interaction between syndecan-4 and fibronectin, none of them is directly dependent on the others in the fibronectin signaling pathway."
sparser
"In these tumors, TNC reduces cell spreading on FN interfering with FN binding to the integrin co-receptor syndecan-4, thus compromising focal contact and stress fiber formation xref ."
sparser
"The integrin α5β1 heterodimer ( xref ) and Sdc4 ( xref ; xref ) bind to distinct domains of fibronectin and are required for NC cell adhesion and migration."
reach
"As an example, in endothelial cells, binding of syndecan-4 to fibronectin cated substrate results in syndecan-4 co-clustering with integrin alpha5beta1 and the activation of Rac-1 through the intracellular scaffold protein synectin."
sparser
"Following Sdc4 binding to FN in the extracellular matrix, the Sdc4 cytoplasmic domain binds phosphatidylinositol 4,5-bisphosphate, which stimulates PKCα activation, leading to the activation of small GTPases and assembly of focal adhesions (Oh et al., 1997; Saoncella et al., 1999; Couchman, 2003; Lim et al., 2003; Dovas et al., 2006)."
sparser
"We found that Syndecan-4 (Sdc4) and Frizzled-7 (Fzd7) form a co-receptor complex in satellite cells and that binding of the glycoprotein Fibronectin (FN) to Sdc4 stimulates the ability of Wnt7a to induce the symmetric expansion of satellite stem cells."
sparser
"Disruption of interactions between syndecan-4 and fibronectin by the extracellular matrix molecule tenascin-C decreases focal adhesions on tumor cells leading to increased tumor cell proliferation [ xref ]."
sparser
"A candidate receptor is syndecan-4, which binds the heparin-binding domain of FN, is involved in Rac-1 activation, p190RhoGAP regulation at the leading edge and concomitant directional persistence xref xref xref xref ."
sparser
"We propose a model for a novel RGD-independent cell adhesion process that could be important during tissue injury and/or remodeling whereby TG-FN binding to syndecan-4 activates PKCalpha leading to its association with beta(1) integrin, reinforcement of actin-stress fiber organization, and MAPK pathway activation."
sparser
"Thus, TNF-α is essential for the formation of FN/ITGβ1/SYND4 complex in NP cells and further elucidates the inflammatory mechanism of NP cells degeneration."
sparser
"The HSPG involved appears to be exclusively syndecan-4[ xref ] that binds to fibronectin via its GAG side chains[ xref ]."
sparser
"Tn-C binds to the FN and syndecan-4, which is necessary for the cells to fully spread on FN ( xref )."
sparser
"The outer (high-affinity) barriers in the interactions of fibronectin with α 5 β 1 -integrin and SDC4 are characterized by larger barrier heights and widths and slower dissociation rates than those of the inner (low-affinity) barriers in the interactions of fibronectin with α 5 β 1 -integrin and decorin."
sparser
"Binding to host fibronectin and host cell receptors integrin α5 β1 and syndecan-4 is followed by induced phagocytosis mediated by clathrin."
sparser
"The question of whether PCPE-1 can bind to fibronectin and syndecan-4 simultaneously and thus might be involved in focal adhesions formation is of interest and warrants further investigation."
sparser
"TNC binds fibronectin at the binding site to syndecan-4, a coreceptor for integrin α5β 1, and has a negative impact on focal adhesion formation and activation of RhoA (Midwood et al., xref ; Lange et al., xref ; Van Obberghen-Schilling et al., xref )."
sparser
"Fibronectin, a secreted extracellular matrix protein, can bind Syndecan-4 to activate Wnt7a to induce symmetric expansion of satellite cells, which is important for early muscle regeneration ( xref )."
sparser
"Thus, the potential heparin antimetastatic activity can be based on interference either directly with the integrin-fibronectin binding or indirectly via competing for the proteoglycan binding of syndecan-4 to fibronectin."
sparser
"Both glypican and syndecan-4 bind the HepII domain of fibronectin similarly."
SDC4 binds FN1 and ITGB1. 1 / 1
| 1
sparser
"TG2 can also act as an adhesion molecule via its interactions with fibronectin (FN), syndecan-4 (SDC4) and integrin beta-1 (ITGB1) [ xref , xref , xref ]."
FN1 activates SDC4.
1 | 1 3
FN1 activates SDC4. 5 / 5
1 | 1 3
reach
"We hypothesized that RhoG might also trigger integrin endocytosis upon engagement of syndecan-4 by fibronectin."
sparser
"Our results demonstrated that neuronal density, neurite length, and neurite branching were lower in the PDMS group and could be further reversed through activating SDC-4 by FN."
reach
"The effects of Sdc4 on RhoA activity after Sdc4 stimulation by fibronectin are summarized in XREF_FIG."
signor
"Sdc4 is a high affinity receptor for fibronectin (FN) […] Therefore, we conclude that Sdc4 binds FN on activated satellite cells."
reach
"Therefore, to examine the role played by Sdc4 in PCP signaling, we investigated whether FN stimulation of Sdc4 facilitates Fzd7 dependent Rac1 activation."
FN1 affects CD44
1 6 | 15 5
FN1 binds CD44.
1 3 | 15 5
1 3 | 14 5
sparser
"These data document a specific and high affinity interaction between fibronectin and the core protein of the matrix heparan sulfate proteoglycan which may anchor the proteoglycan in the matrix."
biogrid
No evidence text available
reach
"CD44 binds hyaluronic acid as well as collagen, fibronectin, laminin, and chondroitin sulfate, important components of the extracellular matrix, as well as the cytokine osteopontin [XREF_BIBR]."
reach
"Herein, public dataset GSE20685 was interrogated to assess the association between DACH1 and CD44, FN1, VIM, FOXA1, EGFR and MKI67, as well as evaluate the correlation between CD44 and the above genes."
sparser
"In addition, all three molecules were experimentally validated to interact with CD44 and FN1 ( xref ), suggesting that CD44 and FN1 may play key roles in prostate tumor initiation and progression."
sparser
"Recently, exosomes were shown to bind Fn via the heparan sulfate proteoglycan, syndecan-1[17]."
reach
"Moreover, plasma cells express surface CXCR4 that migrates towards CXCL12 produced by bone marrow stromal cells as well as SDC1 (CD138, syndecan-1) that binds to fibronectin and collagen, and the adhesion molecule CD44."
sparser
"The binding site on fibronectin was the COOH-terminal heparin binding domain, because (a) the COOH-terminal heparin-binding fragment of fibronectin-bound isolated CD44 antigen; (b) chondroitin sulfate inhibited this binding; and (c) finally, the ectodomain of another cell surface proteoglycan, syndecan, which is known to bind the COOH- terminal heparin binding domain of fibronectin (Saunders, S., and M. Bernfield."
sparser
"Furthermore, it is intriguing to note that Fibronectin is also reported to be a ligand for CD44 receptors [ xref ], suggesting that HA-initiated CD44 signalling may also potentiate a direct FN-CD44 interaction, in addition to stimulating an inside-out activation of integrin receptors to enhance FN engagement with breast cancer cells."
reach
"These include CD44, which binds to hyaluronate and fibronectin, platelet-endothelial (PE) CAM-1 (CD31), a heparin binding protein 22 and L-selectin (CD62L), which has a role in leukocyte adhesion and is expressed on CD34 + -CD38 - primitive cells."
reach
"The core protein of the matrix associated heparan sulfate proteoglycan binds to fibronectin."
omnipath
No evidence text available
omnipath
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omnipath
No evidence text available
sparser
"Chondroitin sulfate-bound CD44 can also mediate interactions of CD44 with the heparin-binding site of fibronectin [44] ."
sparser
"In agarose diffusion assays IGFBP-3 interacted with fibronectin and heparan sulfate proteoglycan but not with type VI collagen or tenascin-C. Direct binding between purified IGFBP-3 and fibronectin and the strong co-localization the two proteins in the cartilage matrix support the hypothesis that IGFPB-3 and fibronectin help regulate local IGF-I levels."
sparser
"Here, we have confirmed some important molecules in ECM-receptor interaction pathway, e.g., the collagen, fibronectin, laminin and CD44 were associated with TMZ resistance phenotype."
sparser
"Of major interest, the triggering of IL-6 is totally dependent on the physical contact between myeloma cells and osteoblastic cells, contact that is partly mediated by CD44, CD56, and fibronectin interactions."
sparser
"These changes were temporally associated with increased accumulation of alpha1(III) and alpha2(IV) collagens, fibronectin, and heparan sulfate proteoglycan along the GBM."
sparser
"However, CD44 also interacts with collagen, laminin, fibronectin, and cytokines and has been suggested to function as a coreceptor for numerous transmembrane proteins, for example, growth factor receptors [ xref , xref ]."
sparser
"Binding of HA to the broadly distributed cell surface glycoprotein CD44 as well as interactions of CD44 with collagen and fibronectin confer cell–matrix contacts and the expression of one human CD44 isoform (CD44H) has been shown to enhance the attachment and motility of melanoma cells in the presence of HA ."
sparser
"The intact chondroitin sulfate form of serglycin, but not free GAG chains isolated from the molecule, binds effectively to fibronectin, collagen , and CD44 ."
sparser
"These findings indicate that CD44 deletion is not sufficient to increase HA accumulation post-wounding, and further studies need to be conducted to understand the regulation of HA synthesis, signaling via other receptors, and interaction with additional CD44 ligands such as fibronectin and collagen during cutaneous wound healing."
SPP1 binds CD44 and FN1. 1 / 1
| 1
sparser
"In conclusion, increased expression of inflammation-related genes of renal tubular cells induced by crystal formation and deposition could induce monocyte-macrophage migration and phagocytosis via the interaction of CD44 with osteopontin and fibronectin."
FN1 activates CD44.
3 |
FN1 activates CD44. 3 / 3
3 |
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
IL10 affects CD4
| 3 17 5
IL10 binds CD4.
| 17 2
| 17 2
sparser
"Increased SOCS1 expression in RA CD4 + T cells may therefore be associated with both the impaired responsiveness to IL-10 and to IL-10-mediated STAT3 activation, and defective SOCS3 expression may be responsible for persistent STAT3 activation in response to serum IL-6."
sparser
"Thus, co-existent helminth infection is associated with an IL-10 mediated (for filarial infection) profound inhibition of antigen-specific CD4(+) T cell responses as well as protective systemic cytokine responses in active pulmonary TB."
sparser
"We show that CD4 IL10 production is associated with high-parasite antigen burden, consistent with other infections as well as non-infectious disease models ( xref , xref )."
sparser
"The transcription factor cMaf is essential for IL-10 transcription in macrophages and upregulation of cMaf is associated with IL-10 expression in CD4 + T cells [ xref , xref ]."
sparser
"To determine if the IL-10 production is associated with CD4 T lymphocytes, CD3 + CD4 + cell subpopulation were gated on and the relative production was assessed."
sparser
"Monofunctional IL10 CD4 T cells were associated with high antigen burden and/or repeated infections, and were associated with protection from symptoms once infected."
sparser
"We determined that colitis in the IL10 −/− CD4 + ➔RAG −/− mice was associated with a decrease in retinal function, as assessed by electroretinography (ERG). xref provides example ERG signals from a PBS➔RAG −/− mouse and an IL10 −/− CD4 + ➔RAG −/− mouse, with the signals from each mouse obtained at four flash intensity settings (0.1, 1, 4, and 16, as described in the Methods)."
sparser
"In our cohort, it was specifically monofunctional IL10 CD4 T cells that were associated with a reduced risk of symptomatic malaria following Pf infection; high frequencies of these cells were significantly associated with reduced odds of symptomatic malaria when infection."
sparser
"We previously reported that a subset of CD4 T-cells secreting high levels of the immunosuppressive cytokine interleukin-10 (IL-10) is significantly associated with late onset of type 1 diabetes and is constitutively present in a majority of nondiabetic individuals."
reach
"CD4 + MLN T cells from B. animalis monoassociated IL-10-/- mice secreted high levels of IFN-gamma and IL-17 in response to B. animalis lysate."
sparser
"Previous study has reported the regulatory role of mast cells in that they interact with conventional CD4 + T cells to generate IL-10 producing regulatory T cells through the axis of ICOSL/ICOS xref ."
reach
"Treg-cell levels were evaluated by flow cytometry (Treg cells identified as CD3 (+) CD4 (+) CD25 (high) CD127 (low)) and by mRNA expression of forkhead box P3 or of Treg associated cytokine interleukin 10."
sparser
"These findings indicate that HLA class I expression on myeloid target cells is required for efficient CD4 IL-10 -mediated lysis, and that the interaction of CD4 IL-10 cells with HLA class I-expressing target cells mediates their activation and the consequent release of GzB."
sparser
"The increased lupus dermatitis in LC-ablated mice was associated with reduced IL-10-producing CD4 + T cells in dLNs, and increased local dermal macrophage infiltration."
sparser
"Antibiotic treatment was associated with an increase in IL-10-producing CD4 + Foxp3 + T cells in the cervical and mesenteric lymph nodes, with consequent protection from disease in adoptive transfer experiments ( xref )."
sparser
"IL-10 function is required for the full protective effect of small-molecule Hedgehog pathway activation in colitis; this pharmacologic augmentation of Hedgehog pathway activity and stromal IL-10 expression are associated with increased presence of CD4 + Foxp3 + regulatory T cells."
sparser
"Multiple bacterial species have been associated with the induction and regulation of CD4 + Foxp3 + and CD4 + IL10 + regulatory T cells in the intestine."
sparser
"Impaired IL-27 signaling was associated with decreased IL-10 + virus-specific CD4 + T cells and delayed viral control ( xref )."
sparser
"Thus, melatonin modulates the differentiation of human Th17 and Tr1 cells in vitro , and endogenous melatonin levels are associated to the expression levels of IL17 and IL10 in peripheral CD4 + T cells in RRMS patients."
IL10 increases the amount of CD4.
| 3 3
IL10 increases the amount of CD4. 6 / 6
| 3 3
isi
"Re-exposure of adult offspring to SEB remarkably reduced the suppressive capacity of Tregs to CD4 + T cells and the expression levels of TGF-beta and IL-10 in the thymus, but had no effect on production of IL-4 and IFN-gamma."
isi
"IKZF3/Aiolos Is Associated with but Not Sufficient for the Expression of IL-10 by CD4"
reach
"Elevated IL-10 was shown to increase HIV infection of macrophages by upregulating surface expression of CD4 and CCR5."
isi
"The expression of IL-10 during naive CD4 + T cell differentiation in vitro was tested."
reach
"Treatment of Healthy CD4 + T Cells with 5-azaC Enhances IL10 and IL13 mRNA Transcription."
reach
"IL-10 can upregulate glucocorticoid-receptor expression of asthmatic CD4 + T cells with glucocorticoid resistant [XREF_BIBR]."
VCAN affects CD44
1 5 | 17 1
1 5 | 17 1
sparser
"In particular, because versican binds to both hyaluronan and CD44, it is possible that the three may form complexes together and stabilize the CD44-dependent interactions of inflammatory cells."
sparser
"Extracellular matrix molecules including versican and hyaluronan which interacts with CD44 have been shown to play key roles in ovarian cancer metastasis [ xref ]."
sparser
"The interaction of the anti-adhesion molecule versican with hyaluronan and CD44 promotes expansion of the pericellular matrix."
sparser
"The interaction of versican with several binding molecules such as hyaluronan and CD44 promotes expansion of the pericellular matrix [ xref ]."
sparser
"CD44 binds to both versican and MT1-MMP, which is able to cleave CD44."
sparser
"The short V3 isoform contains the G1 and G3 terminal domains of versican that may potentially interact directly or indirectly with the hyaluronan receptor CD44 and the EGFR, respectively."
sparser
"These results demonstrate that versican is essential for matrix assembly involving hyaluronan and that diminished versican deposition increases free hyaluronan fragments that interact with CD44 and increase phosphorylation of ERK1/2, leading to cellular senescence."
sparser
"In addition, versican binds with CD44 through its GAG chains or G1 hyaluronan binding domain to promote cell proliferation, migration and adhesion, and enhance the spread of tumors and inflammation ( xref – xref )."
sparser
"HA–versican complexes interact with CD44 expressed by leukocytes, thereby promoting the infiltration of inflammatory cells and thus sustain inflammation in reactive stroma."
sparser
"Enhanced CD44 expression is associated with CD26 and versican in Karpas 299."
sparser
"Versican, which binds to HA, can also bind to CD44 ( xref ) via CS GAGs, suggesting that both versican and HA may stabilize CD44-dependent interactions and subsequent CD44-dependent signaling in inflammatory cells."
omnipath
No evidence text available
omnipath
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omnipath
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omnipath
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omnipath
No evidence text available
hprd
No evidence text available
sparser
"Versican interacts with CD44 through the link module domain present on the amino-terminal end of CD44 [20] ."
sparser
"Our data suggest that induction of increased ovarian cancer cell migration or invasion potential by stromal VCAN may be mediated through binding of VCAN to CD44, which subsequently activates the NF-κB and JNK signaling pathways in ovarian cancer cells and increases CD44, HMMR, and MMP9 production."
reach
"Upregulated genes were those that encode for integrin (ITGA6), basement membrane laminins (LAMB3, LAMA1, and LAMC1), membrane proteins that mediate cell-to-cell and cell-to-matrix interactions (CTNNA1, VCAN, CD44, and THBS2), and inhibitor of the matrix metalloproteinases (TIMP3)."
sparser
"CSPG2 also binds to the cell surface protein CD44 [ xref ], another adhesion molecule, which was up-regulated 2.5-fold in our assay."
sparser
"Further, we do not present data to show a direct link or physical interaction between versican and CD44 in VICs."
sparser
"CSPG2 also binds to the cell surface protein CD44 [72], another adhesion molecule, which was up-regulated 2.5-fold in our assay."
sparser
"The extracellular matrix molecules versican and hyaluronic acid interact with CD44 and serve a pivotal role in OC metastasis ( xref )."
SPP1 affects ITGB1
1 1 15 | 4 3
SPP1 binds ITGB1.
1 1 12 | 4 3
1 1 11 | 3 3
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
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omnipath
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reach
"Furthermore, these 3 genes interact with each other; osteopontin and LAMB3 can both bind to ITGB1, receptors for cellular adhesion to the extracellular matrix and affect adhesion in the microenvironment to enhance the migration and invasion of highly metastatic cells."
reach
"XREF_BIBR Some researchers found that osteopontin and LAMB3 can bind to ITGB1, which are receptors for cellular adhesion to the ECM and affect adhesion in the microenvironment to enhance the migration and invasion of highly metastatic cells."
reach
"In order to identify the interaction between SPP1 and ITGB1, we designed a co-immunoprecipitation experiment."
biogrid
No evidence text available
hprd
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
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omnipath
No evidence text available
omnipath
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omnipath
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omnipath
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sparser
"In previous reports, LAMB3 is overexpressed in PTC upon microarray analysis. xref Moreover, LAMB3 can be aberrantly upregulated by promoter demethylation and induce gastric cancer. xref Furthermore, LAMB3 is related to lymphatic metastasis in lung cancer and affects the migration and invasion capacity in lung cancer cell lines. xref In esophageal squamous cell carcinoma, the expression of LAMB3 is significantly associated with the COL7A1 gene, which is useful for predicting the malignant properties of esophageal squamous cell carcinoma. xref Besides, in the model of human epidermal carcinogenesis, LAMB3 activates PI3K through interactions with collagen VI. xref Some researchers found that osteopontin and LAMB3 can bind to ITGB1, which are receptors for cellular adhesion to the ECM and affect adhesion in the microenvironment to enhance the migration and invasion of highly metastatic cells. xref These studies indicated that LAMB3 is an important gene associated with PTC that may affect the tumorigenesis and progression of different tumors."
sparser
"Osteopontin, LAMB3 and ITGB1 Expression Levels in Lung Cancer Are Associated with Advanced Clinical Stage, Histological Grade, and Lymph Node Metastasis."
sparser
"We found that the expression levels of osteopontin, LAMB3 and ITGB1 were significantly associated with lymph node metastasis, as these levels were significantly higher in lung cancer patients with lymphatic metastasis than in those without lymphatic metastasis."
SPP1 binds ITGAV and ITGB1. 1 / 1
1 |
omnipath
No evidence text available
FN1 binds ITGB1 and SPP1. 1 / 1
| 1
sparser
"The proteins Itgb1, Spp1, Lgals1, and Fn1 formed the second ranked cluster (Cluster 2) as depicted in xref ."
SPP1 activates ITGB1.
3 |
SPP1 activates ITGB1. 3 / 3
3 |
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
FN1 affects ITGB3
1 18 | 2 3
FN1 binds ITGB3.
1 10 | 2 3
1 9 | 2 3
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
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omnipath
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omnipath
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omnipath
No evidence text available
reach
"We treated cells with antibodies to either integrin beta 1 to block collagen-I binding integrins (which all include the beta 1 subunit), or integrin beta 3 that binds fibronectin and other RGD containing ECM proteins (55,56)."
reach
"Integrin beta-3 (ITB3) can interact with fibronectin (FN), which is abundant in the myocardium matrix 11."
hprd
No evidence text available
reach
"As integrin beta-3 also binds to fibronectin, out study provides further evidence that integrin-fibronectin interaction is essential to stem cell mediated repair."
sparser
"The process of platelet interaction with the vessel wall and subendothelial matrix is accomplished through the involvement of many platelet receptors and their corresponding ligands ( xref ).[ xref ] Major platelet surface receptors include the GPIb-IX-V complex, GPVI, integrins αIIbβ3 (also known as GPIIbIIIa), α2β1, α5β1, α6β1, thrombin receptors PAR1 and PAR4 (protease activated receptors), ADP receptors (P2Y1, P2Y12 and P2X1) and thromboxane A2 receptors (TP).[ xref ] Platelet adhesion: Platelet-vessel wall interaction, the tethering and adhesion of platelets to the injured site, is primarily mediated by platelet surface GPIbα receptor in GPIb-IX-V complex which binds to the A1 domain of von Willebrand factor (VWF) immobilized on collagen upon vascular injury, particularly at high shear stress.[ xref ] Subsequent stable platelet adhesion is further mediated by other integrin ligands with their corresponding ligands such as integrin αIIbβ3 bound to fibronectin and fibrinogen/fibrin, α5β1 to fibronectin or collagen, and α2β1 to collagen.[ xref ] Platelet activation : Following initial tethering and adhesion of circulating resting platelets at the site of vascular injury, platelets rapidly undergo a well-defined signaling cascade (Ca 2+ influx, degranulation, phosphatidylserine exposure, etc.) that leads to platelet shape change facilitating further platelet activation and platelet granule release.[ xref ] Platelet α-granule (P-selectin[ xref ], VWF[ xref ], fibrinogen (Fg)[ xref ], fibronectin[ xref ], vitronectin[ xref ], multimerin[ xref ], platelet factor 4[ xref ], and many other proteins) and dense granule (adenosine di-phosphate (ADP), polyphosphates and other) contents are secreted and, in turn, amplify the activation process of integrin αIIbβ3 inside-out signaling, leading to further platelet aggregation.[ xref ] GPIba-VWF interaction is also shown to play an important role in platelet adhesion at low shear conditions.[ xref ] Platelet aggregation: Activation of platelets is a critical step for aggregation."
sparser
"For the present question of the binding of α5β1 with PHSRN and RGD, inhibition studies here and in a previous report have shown that both PHSRN and RGD are capable of competitively binding to this integrin to block cell adhesion to substrates presenting either peptide.( xref ) Another study similarly showed that both RGD and a PHSRN-containing peptide could inhibit the interaction between the αIIbβ3 integrin and FN.( xref ) These reports, taken together with the adhesion data presented in this current study, support a model where PHSRN and RGD competitively bind to the same site in the integrin receptor to mediate cell adhesion."
omnipath
No evidence text available
FN1 binds ITGAV and ITGB3. 1 / 1
1 |
omnipath
No evidence text available
FN1 activates ITGB3.
8 |
FN1 activates ITGB3. 8 / 8
8 |
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
TNF affects INSR
1 | 9 11
TNF binds INSR.
| 7 1
| 7 1
sparser
"A non-TNFi biologic agent may hence be a preferential next-line treatment for TNF-IR patients."
sparser
"The HIRMAb-TNFR fusion protein binds both the HIR and TNFα with low nM affinity."
sparser
"Actual and potential interactions between cell receptor signaling pathways (receptor cross-talk): interaction between TNF-α and the insulin receptor."
reach
"Actual and potential interactions between cell receptor signaling pathways (receptor cross-talk) : interaction between TNF-alpha and the insulin receptor."
sparser
"The outcomes of 56 TNF-IR patients were analysed."
sparser
"To compare therapeutic efficacy of tumour necrosis factor inhibitor (TNFi) cyclers and non-TNFi switchers in patients with rheumatoid arthritis (RA) having inadequate response to previous TNFis (TNF-IR patients) using composite measures including imaging assessment with power Doppler ultrasonography (PDUS)."
sparser
"Donnahoo et al. [9] have shown that I–R-induced renal TNF production was associated with impaired renal function and TNF-binding protein restored creatinine clearance."
sparser
"TNF effect on IRS-1 in Fao hepatoma cells was not associated with a significant reduction in insulin receptor tyrosine kinase activity as measured in vitro but impaired the association of IRS-1 with phosphatidylinositol 3-kinase, localizing TNF impact to IRS-1."
TNF dephosphorylates INSR.
| 7
TNF dephosphorylates INSR. 7 / 7
| 7
reach
"Insulin resistance is one of the first consequences of sustained inflammation, since pro inflammatory cytokines such as interleukins, and TNF-alpha abrogate insulin receptor phosphorylation and post-receptor action, leading to altered lipid storage, lipid spillover and dyslipidemia (Garbossa & Folli, 2017; Paniagua, 2016)."
reach
"TNF-alpha has been shown to induce the expression of SOCS-3 (Suppressor of cytokine signalling-3), which specifically inhibits insulin receptor phosphorylation [XREF_BIBR]."
reach
"TNF-alpha activates c-Jun N-terminal kinase (JNK) to phosphorylate and suppress the activity of insulin receptor (IR) substrate 1."
reach
"In addition, TNF-alpha mediates insulin resistance by reducing insulin receptor kinase activity, down-regulating insulin receptor substrate (IRS) -1 and GLUT-4 phosphorylation and activity, and inducing lipolysis 2."
reach
"Sequential studies showed that TNFalpha not only decreased the amount of (tyrosine) phosphorylation of the insulin receptor substrate (IRS) [13] but also initiated serine phosphorylation of IRS, which inhibited insulin signaling [14]."
reach
"Increased TNFalpha causes an adipocyte specific decrease in insulin receptor phosphorylation; decreased insulin receptor function; resistance to the antilipolytic effects of insulin; de-repression of adipocyte hormone sensitive lipase; increased, continuous lipolysis of the enlarged adipocyte TG mass; and a further increase in plasma LCFA."
reach
"Mechanistically, TNFalpha contributes to insulin resistance by inhibiting the activating phosphorylation of the insulin receptor and insulin receptor substrate 1 (IRS1) in muscle and adipose tissues [XREF_BIBR]."
TNF phosphorylates INSR.
1 | 2 3
TNF phosphorylates INSR. 6 / 6
1 | 2 3
bel
"Analysis of intestinal tissue in TNF-alpha-treated hamsters indicated impaired phosphorylation of insulin receptor-beta, insulin receptor substrate-1, Akt, and Shc and increased phosphorylation of p38, extracellular signal-related kinase-1/2, and Jun NH(2)-terminal kinase."
reach
"some of the insulin resistance induced by the p60 TNF Moreover, staurosporin, a non specific inhibitor of pro- receptor; treatment of hepatoma cells and 3T3-L1 adipo- tein kinase C, did not abrogate the ability of TNF to cytes with sphingomylinase or cell-permeable analogs of inhibit insulin stimulated phosphorylation in Fao hepa- Inhibition of IR Signaling by TNF 169 p80 ~ ~ TNFRI I [I TNFR IIII (~)."
sparser
"In the same adipocytes or surrounding skeletal muscle cells, TNF-α may increase serine phosphorylation of the insulin receptor and also of IRS-1 and possibly other proteins that mediate intracellular insulin signaling."
reach
"This is true for TNF-alpha, which acts on the insulin receptor and prevents the dephosphorylation of insulin receptor substrates, thus blocking receptor signaling and preventing glucose entry into the cell (insulin resistance)."
reach
"Tumor necrosis factor alpha (TNFalpha) or chronic hyperinsulinemia that induce insulin resistance trigger increased Ser/Thr phosphorylation of the insulin receptor (IR) and of its major insulin receptor substrates, IRS-1 and IRS-2."
sparser
"Furthermore, TNF-α induced serine phosphorylation of IR and IRS-1, and these effects were completely precluded by pretreatment with inhibitors of p38 MAPK."
THBS1 affects LRP1
1 4 | 7 9
1 4 | 5 9
sparser
"Moreover, the CRT mutations could also affect CRT binding to LRP1, thereby, disrupting the formation of the TSP1-CRT-LRP1 ternary complex for signaling the cellular activities ( xref )."
sparser
"If cell surface LRP1 is protected by an MMP/ADAM inhibitor, and TSP-1 transport to the cell surface simultaneously is stimulated by cell contact with β1 and β2 integrin ligands, TSP-1 associates heavily with LRP1 ( xref )."
sparser
"In addition, the TSP1 domain of CCN2 binds to LRP1, which acts as a co-repressor of the Frizzled receptor and downregulates Wnt signaling [ xref , xref ]."
reach
"Formation of the ANXA6, LRP1, and TSP1 complex was restricted to cancer associated fibroblasts (CAFs) and required physiopathologic culture conditions that improved tumor cell survival and migration."
reach
"Increased PDA aggressiveness was dependent on tumor cell mediated uptake of CAF derived ANXA6+ EVs carrying the ANXA6, LRP1, and TSP1 complex."
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
reach
"This is because TSP1, even when bound to VEGF, can bind to LRP1, increasing the number of anti-angiogenic receptor complexes, despite having a limited effect on the percentage of free or receptor bound VEGF."
reach
"Further, high affinity binding of TSP-1 to LRP likely results from the trimeric structure of TSP-1."
sparser
"Solid-phase binding assays confirmed that LRP bound to TSP1 and that the interaction was of high affinity (Kd = 5 nM)."
reach
"Although the NH 2 -terminal heparin binding domain of TSP binds LRP, and LRP mediates the endocytic degradation of TSP1 and 2, our analyses failed to demonstrate binding between LRP and the hep I sequence from the NH 2 -terminal heparin binding domain of TSP."
hprd
No evidence text available
reach
"This is because TSP1 binding to LRP1 leads to internalization, removing TSP1 from the tissue and influencing its availability to bind to other species."
reach
"Thus, LRP1 can bind, internalize, and degrade TSP1 through LRP1 binding to the NTD of TSP1."
reach
"For example, a pro migratory signal is generated when LRP1 binds and internalizes the complex of cell surface calreticulin and thrombospondin-1 in coronary artery endothelial cells."
reach
"These results indicate that TSP-1 binding to LRP-1 does not require prior or concomitant interaction with cell surface HSPG but suggest subsequent endocytosis requires high-affinity heparin binding."
sparser
"More importantly, the use of a system of astrocyte-neurons co-cultures indicated that astrocytes activated upon uPA/uPAR binding release thrombosponin-1 (TSP-1), and that the interaction between astrocytic TSP-1 and synaptic LRP1 promotes synaptic recovery in neurons that have suffered a hypoxic injury [ xref ]."
THBS1 binds CALR and LRP1. 2 / 2
| 2
sparser
"For example, a pro-migratory signal is generated when LRP1 binds and internalizes the complex of cell surface calreticulin and thrombospondin-1 in coronary artery endothelial cells ( xref , xref )."
sparser
"The N-terminal domain of TSP1 binds to the calreticulin-LRP1 receptor co-complex to signal down-regulation of cell adhesion and increased cell motility through focal adhesion disassembly."
SPP1 affects ITGAV
2 1 3 9 | 1 5
SPP1 binds ITGAV.
1 1 3 7 | 1 5
1 2 3 | 5
reach
"XREF_BIBR SPP1 binds ITGAV : ITGB3 and possibly ITGA5 : ITGB1integrin heterodimers to induce focal adhesion assembly, a prerequisite for adhesion and migration of oTr cells, through activation of (1) p70S6K via crosstalk between mTOR and MAPK pathways; (2) mTOR, PI3K, MAPK3/MAPK1 (ERK1/2), and MAPK14 (P38) signaling to stimulate oTr cell migration; and (3) focal adhesion assembly and myosin II motor activity to induce migration of oTr cells."
reach
"For ovine trophectoderm cells, SPP1 binds ITGAV : ITGB3 and perhaps ITGA5 : ITGB1 to induce focal adhesion assembly, a prerequisite for adhesion and migration through activation of : 1) ribosomal protein S6 kinase (RPS6K) via crosstalk between MTOR and MAPK pathways; 2) MTOR, phosphatidyl inositol kinase 3 (PIK3), MAPK3/MAPK1 (ERK1/2) and MAPK14 (P38) signaling to stimulate trophectoderm cell migration; and 3) focal adhesion assembly and myosin II motor activity to induce migration of trophectoderm cells."
biogrid
No evidence text available
reach
"ITGAV (alpha v integrins) bind SPP1 (osteopontin) to support trophoblast cell adhesion."
reach
"It has been shown that ITGB3 and ITGAV subunits together bind to SPP1 to generate stable adhesions between the maternal-fetal interface in pigs after the initial attachment of conceptus trophoblast to the endometrial luminal epithelium XREF_BIBR, XREF_BIBR."
reach
"FN1 and SPP1 bind to ITGAV through a RGD containing domain, so their interaction can be blocked by a synthetic peptide GRGDS [XREF_BIBR, XREF_BIBR]."
hprd
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
hprd
No evidence text available
omnipath
No evidence text available
SPP1 binds ITGAV and ITGB3. 2 / 2
2 |
omnipath
No evidence text available
omnipath
No evidence text available
SPP1 binds ITGAV and ITGB6. 2 / 2
1 1 |
hprd
No evidence text available
omnipath
No evidence text available
SPP1 binds ITGAV bound to ITGB3. 1 / 1
1 |
signor
"Among others, vitronectin (vn)1- (11, 13, 14) and osteopontin (opn)-coated (15-20) substrates have been shown to support cell adhesion via avb3."
SPP1 binds ITGAV and ITGB1. 1 / 1
1 |
omnipath
No evidence text available
FN1 binds ITGAV and SPP1. 1 / 1
| 1
sparser
"FN1 and SPP1 bind to ITGAV through a RGD-containing domain, so their interaction can be blocked by a synthetic peptide GRGDS [ xref , xref ]."
SPP1 activates ITGAV.
1 2 |
SPP1 activates ITGAV. 2 / 2
2 |
omnipath
No evidence text available
omnipath
No evidence text available
SPP1 activates ITGAV bound to ITGB3. 1 / 1
1 |
signor
"Among others, vitronectin (vn)1- (11, 13, 14) and osteopontin (opn)-coated (15-20) substrates have been shown to support cell adhesion via avb3."
SIRPA affects PTPN6
1 4 | 16
SIRPA binds PTPN6.
1 4 | 12
1 4 | 12
sparser
"Poor association of SIRPα and PIR-B with SHP-1 was also observed by co-immunoprecipitation experiments fromlyn −/− macrophages ( xref )."
sparser
"BIT and PIR-B bind preferentially to substrate-trapping mutants of SHP-1 and are hyperphosphorylated in macrophages from motheaten viable mice, which express catalytically impaired forms of SHP-1, indicating that these proteins are SHP-1 substrates."
sparser
"LPS and poly(I : C) each induced the tyrosine phosphorylation of SHPS-1 through a Src family kinase and the association of SHPS-1 with SHP-1 and SHP-2."
sparser
"SHPS-1 tyrosine phosphorylation leads to recruitment of two phosphatases SHP-1 and SHP-2 that bind to SHPS-1 through their SH2 domains xref ."
sparser
"These results suggest that LPS or poly(I : C) induces tyrosine phosphorylation of SHPS-1 and the association of SHPS-1 with SHP-1 and SHP-2 in a manner dependent on a Src family kinase."
sparser
"This functional suppression is preceded by association of SHP-1 and SHP-2 with SIRP-α ITIMs, as well as inhibition of calcium mobilization and ERK activation."
biogrid
No evidence text available
hprd
No evidence text available
sparser
"Given that SHP-1 is highly expressed in macrophages and, at a much lower level, in epithelial or fibroblast cells, whereas SHP-2 is expressed in the opposite manner, it is possible that the dynamic interaction of SIRPα with SHP-1 and -2 is crucial for proper regulation of the MAPKs by LPS or some growth factors in cells derived from different tissues."
hprd
No evidence text available
sparser
"After Fcγ receptor cross-linking, Fgr becomes associated with the immunoreceptor tyrosine-based inhibition motif (ITIM)–containing receptor, SIRPα (a member of the signal-regulatory protein family, also known as Src homology 2 domain–containing protein tyrosine phosphatase [SHP] substrate 1 [SHPS-1], brain immunoglobulin-like molecule with tyrosine-based activation motifs [BIT], and P84) and potentiates the association of the phosphatase SHP-1 with SIRPα."
sparser
"After Fcgamma receptor cross-linking, Fgr becomes associated with the immunoreceptor tyrosine-based inhibition motif (ITIM)-containing receptor, SIRPalpha (a member of the signal-regulatory protein family, also known as Src homology 2 domain-containing protein tyrosine phosphatase [SHP] substrate 1 [SHPS-1], brain immunoglobulin-like molecule with tyrosine-based activation motifs [BIT], and P84) and potentiates the association of the phosphatase SHP-1 with SIRPalpha."
hprd
No evidence text available
hprd
No evidence text available
sparser
"As reported by others xref xref , SHP-1 was constitutively associated with SIRPα in both cells."
sparser
"The lung collectins also initiated rapid association of SHP-1 with SIRPα as shown by coimmunoprecipitation (Figure 3D) ."
sparser
"Fgr Associates with a Complex of the ITIM-containing Receptor SIRPα and the Phosphatase SHP-1 after FcγR Aggregation."
SIRPA activates PTPN6.
| 4
SIRPA activates PTPN6. 4 / 4
| 4
sparser
"Synaptic activation of SHP-1 phosphatase by CD47-SIRPα has been clear, but downstream targets and mechanisms in phagocytosis inhibition have remained unknown."
sparser
"Upon CD47 binding, SIRPA activates the phosphatase SHP-1 (ref. xref ), which inhibits the cytoskeleton-intensive phagocytosis of cells and large particles that are opsonized by antibody and complement among other antagonistic factors. xref , xref By this pathway, CD47 acts as a “Marker of Self” as originally described when CD47-deficient red cells were injected into control mice and found to be rapidly cleared by splenic macrophages. xref While marker of self capability has been examined in a variety of cell types and also synthetic beads whether such a signal would likewise function on a virus that is 100-fold smaller than a cell is unclear."
sparser
"The interaction of CD47 on he-matopoietic cells to SIRPα on macrophages is thought to prevent phagocytosis through an SIRPα-dependent activation of SHP-1 ( xref , xref , xref , xref )."
sparser
"The SIRPα activation of SHP-1 determines both the life span of individual RBCs and the number of these cells in the circulation ( xref , xref , xref , xref )."
IL1RN affects IL1R1
18 | 3
IL1RN binds IL1R1.
9 | 3
9 |
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
IL1B binds IL1R1 and IL1RN. 3 / 3
| 3
sparser
"The type I IL-1R binds IL-1α, IL-1β and the receptor antagonist IL-1Ra (reviewed in Ref. [65] )."
sparser
"In addition, IL-1R1 can be released into the extracellular space where, in its soluble form (sIL-1R1), it can also function as a soluble decoy receptor and prevent the binding of IL-1α, IL-1β, and IL-1Ra to membrane IL-1R1 ( xref )."
sparser
"On the mRNA level of MSC, we found IL1RN, which binds to IL1R on the cell surface with subsequent inhibition of the IL1beta signaling pathway, to be upregulated from a low basal level of expression upon stimulation with the PTC (318-fold) or IL1beta (107-fold) and to remain unchanged after stimulation with IL6, IL8, C3a and C5a in concentrations used in the “cocktail” ( xref )."
IL1RN inhibits IL1R1.
9 |
IL1RN inhibits IL1R1. 9 / 9
9 |
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
VEGFA affects PDGFRB
| 1 13 6
VEGFA binds PDGFRB.
| 9 4
| 5 4
sparser
"Increased PDGFRβ activity is associated with overexpression of VEGF-A and VEGFR-2, and results in increased sprouting, pericyte coating and vessel formation [ xref ]."
sparser
"Tissue expressions of VEGFA, CD31, and PDGFRβ were associated with response, but their predictive value was not confirmed [ xref ]."
sparser
"Several pathways inhibited by sunitinib have been implicated in the pathogenesis of breast cancer: for example, expression of VEGF-A, PDGF-AB, and PDGFR-β has been associated with poor prognosis [ xref - xref ]."
reach
"Second, the VEGFA induced cell proliferation may rely on both KDR and PDGFRbeta binding to VEGFA."
reach
"After VEGF-A 165 stimulation, PDGFR immunoprecipitation, and immunoblot analysis, a distinct association between VEGF-A and PDGFRalpha or PDGFRbeta was demonstrated (XREF_FIG)."
sparser
"We quantified the kinetics of the recent VEGF-A:PDGFRβ interaction for the first time with K D  = 340 pM."
reach
"First, the VEGFA induced proliferative stimuli may be dependent on the binding of VEGFA to PDGFRbeta as implied by the IOMM-Lee data."
reach
"VEGF-A 165 bound to both PDGFRalpha and PDGFRbeta."
sparser
"Increased PDGFR-beta kinase activity is associated with elevated expression of VEGF-A and VEGF receptor-2, acting directly on endothelial cells and resulting in increased vessel formation."
| 4
sparser
"VEGF-A binds to both PDGFRalpha and PDGFRbeta and induces tyrosine phosphorylation that, when inhibited, results in attenuation of VEGF-A-induced MSC migration and proliferation."
sparser
"It has been known that VEGF-A binds to both PDGFR-α and PDGFR-β and induces tyrosine phosphorylation ( xref )."
sparser
"VEGF-A binds to both PDGFRα and PDGFRβ and induces tyrosine phosphorylation that, when inhibited, results in attenuation of VEGF-A–induced MSC migration and proliferation."
sparser
"Having established by several methods that VEGF-A 165 –stimulated tyrosine phosphorylation of both PDGFRs, we went on to confirm VEGF-A 165 binding to cell surface PDGFRα and PDGFRβ using a cross-linking approach."
VEGFA phosphorylates PDGFRB.
| 1 4 2
VEGFA phosphorylates PDGFRB. 7 / 7
| 1 4 2
reach
"Moreover, VEGF-A has been shown to negatively regulate pericyte function by inhibiting PDGFR-beta phosphorylation through the formation of a nonfunctional VEGFR-2, PDGFR, and beta complex, which results in a reduction in vascular pericyte coverage [XREF_BIBR]."
sparser
"The VEGFA induced concentration-dependent PDGFRβ tyrosine phosphorylation comparable to PDGFB-induced PDGFRβ tyrosine phosphorylation."
rlimsp
"As shown in Figure 4C, the phosphorylation of PDGFRβ by VEGFA increased with increasing concentrations."
sparser
"PDGFB and VEGFA stimulated phosphorylation of PDGFRB and VEGFR2 in pericytes and BRAF WT/V600E -PTC, but not in BRAF WT/WT -PTC, which showed low levels of these receptors ( xref )."
reach
"As shown in XREF_FIG, the phosphorylation of PDGFRbeta by VEGFA increased with increasing concentrations."
sparser
"However, VEGF-A–induced PDGFRα and PDGFRβ tyrosine phosphorylation was clearly confirmed, highlighting that VEGF-A exerts its effect on MSCs by the stimulation of PDGFRs."
sparser
"In addition, gambogic acid suppressed the VEGFA-induced PDGFRβ tyrosine phosphorylation."
IL10 affects TLR4
| 2 13 5
IL10 binds TLR4.
| 13 2
| 10 2
reach
"In conclusion we found an association between IL10, FAS, and TLR4 in the donor and IL18 in the recipient and an increased risk of developing aGvHD in transplanted children."
sparser
"Decreased LPS-induced IL-12(p70) and IL-10 responses were associated with the TLR4 (Asp299Gly) polymorphism and independently with asthma, especially atopic asthma."
sparser
"Intestinal microbiota composition before peroral association of TLR4 deficient IL10 −/− mice with multi-drug resistant P. aeruginosa ."
reach
"The key and novel findings include : 1) Both hepatocyte and myeloid cell TLR4 is required for maximal I/R associated injury; 2) DC TLR4 -/- worsens injury after I/R and is associated with decreased IL-10 expression; 3) Hepatocytes are a major source of circulating HGMB1 after I/R; 4) Hepatocytes respond to hypoxia with increased phosphorylation of MAP kinases, JNK and p38, in a TLR4 dependent fashion; 5) Hypoxia induced HMGB1 release from hepatocytes is dependent on the function of JNK."
sparser
"Intestinal colonization properties of multi-drug resistant P. aeruginosa following peroral association of TLR4 deficient IL10 −/− mice."
sparser
"Hence, TLR4 deficiency of PA-colonized IL10 –/– mice is associated with less distinct innate as well as adaptive immune cell responses in the large intestines."
sparser
"In addition, TLR2 -/- and TLR4 -/- DCs confirmed the association of IL-10 production with TLR2 and TLR4 signaling; IL-10 production synergistically increased when both TLR4 and TLR2 were involved."
sparser
"The enhancement of antibody responses was associated with BG-induced production of IL-10 through TLR4 pathway."
sparser
"Blocking of TLR4 is associated with down-regulation of the release of IL-8 and IL-10 and with anti-apoptotic behavior, which allows the fungus to persist as it sees fit."
sparser
"LPS-induced up-regulation of TLR4 was associated with enhancement of IFN-γ release and abrogation of IL-10."
sparser
"None of the other IL10 or TLR4 or the CRP SNPs was associated with risk (data not shown)."
sparser
"The suppression phenotype induced by Wnt5a is associated with the induction of interleukin-10 and the inhibition of the Toll-like receptor 4-nuclear factor κB signaling pathway ( xref )."
TLR4 binds TNF and IL10. 3 / 3
| 3
sparser
"Moreover, using the co-expression data of gene pairs, the data showed that the co-expression of IL1B and TNFA (under pathophysiological conditions), the co-expression of TNFA and IL4 (under physiological conditions), and the co-expression of TNFA and IL10 (under pathophysiological + physiological conditions) was strongly associated with TLR4 expression."
sparser
"The results showed that TNFA ( d  = 0.61) and TLR4 ( d  = 0.34) were negatively associated with IL10 expression under basic conditions ( P  < 0.05)."
sparser
"Failure otitis media recovery in TLR2 −/− and TLR4 −/− mice is associated with decreased TNF and enhanced IL-10 expression, suggesting that abnormalities of innate immunity may contribute to otitis media in humans and that innate immune pathways could be targets of otitis media therapy."
IL10 increases the amount of TLR4.
| 2 3
IL10 increases the amount of TLR4. 5 / 5
| 2 3
reach
"Neutrophils produced a significant increase of IL-8, IL-1beta and TNF-alpha after 3, 6 and 24 h of H. pylori challenge, respectively, whereas IL-10 increased after 24 h. Helicobacter pylori challenge increased TLR2 and TLR4 expression; and antibodies against TLR2 and TLR4 diminished significantly the H. pylori induced production of IL-8 and IL-10."
isi
"Preimplantation kidney biopsies from ECD (n=41) and SCD (n=39) were evaluated for real-time quantitative polymerase chain reaction (qPCR) gene expression using the TaqMan Gene Expression Array Plates system for genes TLR4, HMGB1, NFK-beta, MyD-88, INF-gamma, IL1-beta, TNF-alpha, CASP1, ICAM-1, IL-10, HO-1, HIF-1, MCP-1, TGF-beta, TRIF, TRAM, IRF-3, RIP1, INFbeta-1 and NLRP3."
reach
"Toll like receptor (TLR) 2 and TLR4 mRNA, as well as TLR4 surface expression, were significantly up-regulated by IL-10 in adherent cells."
isi
"We recruited 80 patients to measure the expression of HMGB1, IL-17, and IL-10; 55 patients were recruited to measure the expression of TLR2 and TLR4 in monocyte and CD1c+dendritic cells, and 30 volunteers were included as controls."
reach
"Binding sites for CREB have been identified in the IL-10 promoter, and mutation of the MSK phosphorylation site, Ser133, in CREB reduced TLR4 induced IL-10 transcription."
FN1 affects ITGB6
2 1 17 |
FN1 binds ITGB6.
1 1 9 |
8 |
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
FN1 binds ITGAV and ITGB6. 2 / 2
1 1 |
hprd
No evidence text available
omnipath
No evidence text available
FN1 binds ITGB6 bound to ITGAV. 1 / 1
1 |
signor
"Integrin alpha v beta 6 binds to fibronectin, but not to vitronectin or collagen i. cell adhesion assays show that fg-2 cell attachment to fibronectin is only partially inhibited by anti-beta 1 integrin antibodies, implying that other fibronectin receptors may be involved."
FN1 activates ITGB6.
1 8 |
FN1 activates ITGB6. 8 / 8
8 |
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
FN1 activates ITGB6 bound to ITGAV. 1 / 1
1 |
signor
"Integrin alpha v beta 6 binds to fibronectin, but not to vitronectin or collagen i. cell adhesion assays show that fg-2 cell attachment to fibronectin is only partially inhibited by anti-beta 1 integrin antibodies, implying that other fibronectin receptors may be involved."
MIF affects CD44
| 13 6
| 13 6
sparser
"It has been reported that MIF mediates many of its inflammatory properties by interacting with the CD74-CD44 MIF receptor complex ( xref )."
sparser
"It was previously shown that in macrophages, MIF binds to a complex of CD74 and CD44, resulting in initiation of a signaling pathway."
reach
"The MIF, CD74, and CD44 complex is believed to regulate the signaling of leukocyte migration to sites of inflammation."
sparser
"Interestingly, both MIF, CD74, and CD44 have been associated with tumor progression and metastasis ( xref – xref )."
sparser
"It was previously shown that in macrophages, MIF binds to a CD74-CD44 complex."
sparser
"We concluded that the interactions of CD74 with MIF and CD74 with CD44 could be a potential tumour marker for breast cancer cells."
sparser
"ILF immunoprecipitation followed by Western blot analysis was performed to identify an association of MIF with CD74 and/or CD44."
sparser
"We developed a tentative model of MIF- CD44- CD74 interaction."
sparser
"In addition, MIF also binds to the receptor CD44 and the co-receptor CD74."
sparser
"We recently documented that MIF associates with CD74 and CD44 in an urothelial cancer cell line [ xref ] and in an in vivo model of bladder inflammation [ xref ] suggesting that the effects of MIF on the bladder are mediated by interaction with both CD74 and CD44."
sparser
"However, human benign prostate hyperplasia epithelial cells (BPH-1) and PrEC prostate cancer cells do not express CD74 on the cell surface, so for this reason, both cells do not interact with MIF and CD44 [ xref ]."
sparser
"MIF interacts with soluble CD44 in the ILF and it is available to bind with CD74 in the bladder to exert proinflammatory effects."
reach
"MIF interacts with soluble CD44 in the ILF and it is available to bind with CD74 in the bladder to exert proinflammatory effects."
reach
"We recently documented that MIF associates with CD74 and CD44 in an urothelial cancer cell line [XREF_BIBR] and in an in vivo model of bladder inflammation [XREF_BIBR] suggesting that the effects of MIF on the bladder are mediated by interaction with both CD74 and CD44."
reach
"Given the demonstrated binding of MIF to the CD74 and CD44 complex, an interference with the perception of contact inhibition signals by CD44 seems intriguing."
sparser
"Anti-MIF antibody prevents interaction of MIF with soluble CD44 again blocking MIF signal transduction."
sparser
"The cells also expressed CD44, the hyaluronic acid receptor that has been implicated in MIF cell surface binding and signaling, but CD44 does not directly bind MIF nor can it elicit MIF-mediated responses in the absence of CD74."
reach
"MIF and D-DT, which both bind to the CD74 and CD44 receptor complex, are differentially expressed in adipose tissue and have distinct roles in adipogenesis."
reach
"The soluble CD44 and MIF complex interacts with CD74 to induce activation of cytokine production and cell proliferation presumably through ERK1/2 [XREF_BIBR]."
IL1B affects TLR4
3 | 10 6
IL1B binds TLR4.
| 10 6
| 8 6
sparser
"Since previous reports showed that the production of IL-1β is associated with TLR2 and TLR4 pathway [ xref ], we thus speculated that the inhibitory effect of ischemic postconditioning on the IL-1β production might be correlated with inhibition of TLR2 or TLR4 pathway."
sparser
"Elevated production of IL-1β from monocytes following TLR-2, TLR-4 and TLR-7/8 stimulation was associated with reduced odds of TB recurrence."
sparser
"Functional studies revealed that this NFKBIA rs2233406 genotype was associated with elevated TLR4-mediated IL-1β production."
sparser
"Both types of glial cells release Tnf and produce the immature form of Il1b in a Tlr4-dependent manner in the presence of Hsp70."
sparser
"The four SNPs that had significant single SNP associations with either IL-1α (IL-1RAP rs6444435) or IL-1β (IL-1R2 – rs4851527 and rs4851531, IL-1RAP – rs6765375) in AA were tested for interaction effects with the two SNPs in TLR4 (rs1554973 and rs7856729) that were associated with IL-1α and IL-1β in European Americans in a previous study ( xref [pd1] )."
reach
"The gram negative bacterial cell wall component LPS and IL-1beta, which bind to Toll Like Receptor 4 (TLR4) and the IL-1 Type-I receptor (IL-1RI), respectively, play a pivotal role in this process."
sparser
"The gram-negative bacterial cell wall component LPS and IL-1β, which bind to Toll-Like Receptor 4 (TLR4) and the IL-1 Type-I receptor (IL-1RI), respectively, play a pivotal role in this process."
reach
"Our results also propose that IL-1beta may bind to TLR4, in addition to its cognate receptor IL-1R1, to exert its inflammatory effects in microglia, which is a novel finding and needs to be further explored."
sparser
"Our results also propose that IL-1β may bind to TLR4, in addition to its cognate receptor IL-1R1, to exert its inflammatory effects in microglia, which is a novel finding and needs to be further explored."
reach
"The association between precancerous gastric lesions and serum pepsinogens, serum gastrin, vascular endothelial growth factor, serum interleukin-1 Beta, serum toll like receptor-4 levels and Helicobacter pylori Cag A status."
reach
"The four SNPs that had significant single SNP associations with either IL-1alpha (IL-1RAP rs6444435) or IL-1beta (IL-1R2 - rs4851527 and rs4851531, IL-1RAP - rs6765375) in AA were tested for interaction effects with the two SNPs in TLR4 (rs1554973 and rs7856729) that were associated with IL-1alpha and IL-1beta in European Americans in a previous study."
reach
"6 Binding of IL-1beta to IL-1R or LPS to TLR4 causes recruitment of adopter proteins such as MyD88, IRAK, and TRAF6 to the receptor."
reach
"The aim of this study was to investigate the association between serum pepsinogens, serum gastrin, serum vascular endothelial growth factor, serum interleukin-1 Beta, serum toll like receptor-4 levels and Helicobacter pylori Cag A status in patients with various gastric precancerous lesions."
sparser
"Although HMGB1 has been shown to stimulate pro-inflammatory cytokine production xref , xref , xref , it is unlikely that HMGB1 interacts with TLR4 to promote IL-1β production and cell death in our system."
TLR4 binds TNF and IL1B. 1 / 1
| 1
sparser
"The second principal component indicates that the high expression of TLR-4 was associated with high expression of pro-inflammatory cytokines TNF-α and IL-1β ."
TLR4 binds IL1B and IL1R1. 1 / 1
| 1
sparser
"IL-1β or LPS binding to IL-1R or TLR4, respectively, results in the rapid association of the adaptor molecule Myd88 with the receptors and subsequent recruitment of the kinases IRAK1 and IRAK4. xref Activation and phosphorylation of IRAK kinases leads to the recruitment of the E3 ubiquitin ligase TRAF6 which undergoes K63-linked autoubiquitination and serves as a scaffold to recruit TAK1 and IKK kinases through binding to TAB2/3 and NEMO, respectively. xref TAK1 is subsequently activated and triggers IKK/NF-κB and mitogen-activated protein kinase/c-Jun N-terminal kinase activation. xref "
IL1B increases the amount of TLR4.
3 |
Transcriptionally active IL1B increases the amount of TLR4. 3 / 3
3 |
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
VEGFA affects NRP2
8 | 7 3
VEGFA binds NRP2.
4 | 7 3
4 | 4 3
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
sparser
"Neuropilin-2 is also able to bind VEGF-A 165 , but unlike neuropilin-1, it also interacts with VEGF-A 145 [ xref , xref , xref ]."
reach
"VEGF-A 165 but not VEGF-A 121 interacts with neuropilin-1 (NRP-1) and neuropilin-2 (NRP-2), which are cell surface transmembrane glycoprotein receptors [XREF_BIBR]."
reach
"Accordingly, the disruption of NRP1 or NRP2 binding to VEGF-A (165) or HGF with a blocking antibody, decreased the proliferation and migration of endothelial cells."
reach
"The KKK and QNG L3-loop produces the largest net gain in Nrp2 binding to VEGF-A."
sparser
"On the other hand, Nrp-2 can bind class III semaphorins and VEGF proteins (VEGF-A 165 , VEGF-A 145 , and VEGF-C)."
sparser
"NRP2 specifically binds VEGF-A and VEGF-C, although the biological relevance of these interactions in human endothelial cells is poorly understood."
sparser
"Interestingly, in breast cancer, HH–GLI signaling was triggered in an autocrine manner by stimulation of the VEGF receptor neuropilin-2 (NRP2), xref whose expression in NSCLCs has been linked to unfavorable outcomes. xref , xref , xref In its role as a VEGF receptor, NRP2 specifically binds both VEGFA and VEGFC, xref and VEGF/NRP signaling impacts the biology of stem-like tumor cells in various types of cancer. xref , xref , xref We wondered whether oncogenic NRP2/ERK signaling might be the upstream cause of the noncanonical GLI1 activity in LAC cells."
VEGFA binds NRP1 and NRP2. 3 / 3
| 3
sparser
"VEGF-A 165 binding to NRP1 and NRP2 is important for migration of endothelial cells."
sparser
"Among many downstream factors of VEGFA [ xref , xref ], we found it was VEGFR2 rather than NRP1 and NRP2 associated with VEGFA in our study."
sparser
"However, this interaction alone is insufficient to explain the marked difference in potency of VEGF-A binding to Nrp1 and Nrp2, therefore other molecular determinants of this preferential binding must exist."
VEGFA activates NRP2.
4 |
VEGFA activates NRP2. 4 / 4
4 |
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
LRP1 affects CALR
1 6 | 7 4
1 6 | 5 4
sparser
"It is not surprising that both calnexin and calreticulin associate with LRP because of their broad substrate specificity; the list of glycoproteins currently known to interact with calnexin and calreticulin is extensive, and no particular type of N-glycoprotein (soluble lysosomal, secreted, bound to internal or plasma membranes, etc.) is thought to be excluded [50] ."
bel
"Removal of apoptotic cells is essential for maintenance of tissue homeostasis, organogenesis, remodeling, development, and maintenance of the immune system, protection against neoplasia, and resolution of inflammation. The mechanisms of this removal involve recognition of the apoptotic cell surface and initiation of phagocytic uptake into a variety of cell types. Here we provide evidence that C1q and mannose binding lectin (MBL), a member of the collectin family of proteins, bind to apoptotic cells and stimulate ingestion of these by ligation on the phagocyte surface of the multifunctional protein, calreticulin (also known as the cC1qR), which in turn is bound to the endocytic receptor protein CD91, also known as the alpha-2-macroglobulin receptor. Use of these proteins provides another example of apoptotic cell clearance mediated by pattern recognition molecules of the innate immune system. Ingestion of the apoptotic cells through calreticulin/CD91 stimulation is further shown to involve the process of macropinocytosis, implicated as a primitive and relatively nonselective uptake mechanism for C1q- and MBL-enhanced engulfment of whole, intact apoptotic cells, as well as cell debris and foreign organisms to which these molecules may bind."
sparser
"These drug-gene links are based on the binding of the LRP1 and CALR proteins to tPA in in-vitro models xref , xref and the physiological relevance of these interactions have not been established (for further discussion on the limitations of drug-gene interaction databases see below)."
reach
"It is not surprising that both calnexin and calreticulin associate with LRP because of their broad substrate specificity; the list of glycoproteins currently known to interact with calnexin and calreticulin is extensive, and no particular type of N-glycoprotein (soluble lysosomal, secreted, bound to internal or plasma membranes, etc.) is thought to be excluded [50]."
sparser
"Furthermore, in a recent study, Yuan and colleagues applied colloidal NPs to develop a multivalent bispecific nanobioconjugate engager (mBiNE) composed of colloidal NPs conjugated with a HER2-specific antibody and a calreticulin-binding low-density lipoprotein receptor-related protein 1 (LRP1) that specifically binds the cell surface HER2 protein and pro-phagocytosis-mediating calreticulin.[ xref ] Treatment of tumor-bearing mice with mBiNE promoted receptor-targeted phagocytosis of cancer cells by macrophages and, consequently, enhanced antigen processing and presentation by APCs."
sparser
"Phagocytosis of shCD47-1 and shCD47-2 Raji cells was dependent on the calreticulin-LRP interaction as the observed phagocytosis was completely abrogated in the presence of a CRT blocking peptide ( xref )."
reach
"TSP-1 also signals through calreticulin and LRP1 complex to activate cell-survival signals in fibroblasts and to increase their migration [XREF_BIBR], and this mechanism may also contribute to pro fibrotic activities of TSP-1 during repair and remodeling processes."
reach
"Other opsonins that are known to mediate phagocytosis via MerTK are growth arrest specific protein 6 and Protein S, which bind to exposed phosphatidylserine, whereas vitronectin receptors bind to exposed phosphatidylserine via the opsonin MFG-E8, the LRP1 receptor binds to calreticulin exposed on cells, and the CR3 receptor binds to iC3b opsonized and, possibly, C1q opsonized cells."
sparser
"Macrophages can be activated by the interaction of calreticulin and LRP."
reach
"Hence, chemokines and integrin ligands up-regulate a dominant motogenic pathway through LRP1 and TSP-1 cleavage and activate an associated adhesion pathway through the LRP1 and calreticulin complex, intact TSP-1 and CD47."
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
THBS1 binds CALR and LRP1. 2 / 2
| 2
sparser
"For example, a pro-migratory signal is generated when LRP1 binds and internalizes the complex of cell surface calreticulin and thrombospondin-1 in coronary artery endothelial cells ( xref , xref )."
sparser
"The N-terminal domain of TSP1 binds to the calreticulin-LRP1 receptor co-complex to signal down-regulation of cell adhesion and increased cell motility through focal adhesion disassembly."
TNF affects GPR68
7 | 10
TNF increases the amount of GPR68. 10 / 10
| 10
reach
"OGR1 expression induced by TNF, PMA, or LPS was prevented by treatment with PI-3 (Akt1/2), MAP, and PKC inhibitors and with NF-kappaB inhibitors AICAR, BAY-11-7082, CAY10512, and SC-514."
reach
"TNF upregulates OGR1 expression for short periods (6-12 h); however, the effect is not sustained for longer periods, after 24 to 48 hours OGR1 expression returns to basal levels."
reach
"XREF_BIBR In thecurrent study we show that hypoxia enhances TNF mediated induction of OGR1 expression, and that this effect was reversed by NF-kappaB inhibition under hypoxic conditions."
reach
"XREF_BIBR, XREF_BIBR We show that hypoxia enhances TNF mediated induction of OGR1 expression."
reach
"The enhancement of TNF- and hypoxia induced OGR1 expression under low pH points to a positive feed-forward regulation of OGR1 activity in acidic conditions, and supports a role for OGR1 in the pathogenesis of IBD."
reach
"OGR1 expression is induced in cells of human macrophage lineage and primary human monocytes by TNF."
reach
"We previously reported that OGR1 expression was induced in cells of human macrophage lineage and primary human monocytes by TNF and that NF-kappaB inhibition reversed the induction of OGR1 mRNA expression by TNF."
reach
"NF-kappaB inhibition reverses the induction of OGR1 expression by TNF."
reach
"In a previous study we reported that TNF treatment induced OGR1 expression in MM6 cells and primary human and murine monocytes, and that this process was reversed by the NF-kappaB inhibitors MG132, AICAR, BAY-11-7082, CAY10512, and SC-514 in MM6 cells."
reach
"The stimulation of OGR1 expression by TNF and hypoxia, and subsequent pH sensing activity, may play a role in IBD pathogenesis."
Transcriptionally active TNF increases the amount of GPR68. 7 / 7
7 |
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
TNF affects F3
10 | 4 3
TNF increases the amount of F3.
10 |
Transcriptionally active TNF increases the amount of F3. 10 / 10
10 |
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
TNF binds F3.
| 4 3
TNF binds F3. 7 / 7
| 4 3
sparser
"However, addition of calcitriol or paricalcitol blunted the TNF-α-induced TF expression and activity (2.01 ± 0.24 and 1.32 ± 0.14 vs. 3.02 ± 0.39 pmol/mg protein, P < 0.05), which was associated with down-regulation of NF-κB signaling and PAR-2 expression, as well as with restored levels of vitamin D receptor and enhanced expression of TF pathway inhibitor."
sparser
"However, upon treatment with calcitriol and paricalcitol, TNF-α-induced TF expression and activity associated with downregulation of NF-κB signaling and PAR-2 expression were significantly blunted, the levels of VDR were restored, and the expression of TF pathway inhibitor (TFPI) was enhanced [ xref ]."
reach
"We found an association between TIMP-1 and APACHE-II (rho = 0.33; P = 0.001), TF (rho = 0.43; P < 0.001) and TNF-alpha (rho = 0.43; P < 0.001) (XREF_TABLE)."
reach
"Based on the present findings, we suppose that the brain region specific methylation state of solitary CpGs in the TNF-alpha promoter determines the efficacy of TF binding and thus TNF-alpha expression."
sparser
"However, in our series only lenalidomide induced upregulation of TNFα, sVCAM1, and TF were significantly associated with subsequent thrombosis ( xref )."
reach
"Besides, an association between TIMP-1 and APACHE-II (rho = 0.33; P = 0.001), TF (rho = 0.43; P < 0.001), and TNF-alpha (rho = 0.43; P < 0.001) was found in our study."
sparser
"We have also demonstrated that miR-19b upregulation induced by TNF-α is associated with TF gene transcription and miR-19b can inhibit TF expression by prompting TF mRNA degradation in ECs."
IL1B affects F3
10 | 7
IL1B increases the amount of F3.
10 |
Transcriptionally active IL1B increases the amount of F3. 10 / 10
10 |
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
IL1B binds F3.
| 7
F3 binds IL1B. 7 / 7
| 7
sparser
"In the presence of IL-1β, however, additional treatment with AM-630 as well as the combination of AM-251 and AM-630 was associated with a further significant increase of IL-1β-induced TF protein levels (Figure xref )."
sparser
"Whereas treatment of cells with nSMase spiroepoxide inhibitor was associated with a substantial suppression of IL-1β-induced TF formation, fumonisin B 1 and ISP-1 failed to elicit such effect (Figure xref )."
sparser
"Subsequent experiments revealed WIN 55,212-2 to impair the phosphorylation of p38 MAPK and JNK thereby proving an additional target of the cannabinoid in interfering with TF formation by IL-1β."
sparser
"In addition, the stimulatory effect of ceramide on basal and IL-1β-induced TF protein formation was confirmed by incubating cells with nSMase from B. cereus (Figure xref )."
sparser
"First, treatment of cells with nSMase spiroepoxide inhibitor [ xref ], which selectively inhibits the nSMase-catalyzed hydrolysis of membrane sphingomyelin to ceramide, was associated with a substantial suppression of IL-1β-induced TF formation and cellular ceramide levels."
sparser
"Whereas treatment of cells with nSMase spiroepoxide inhibitor was associated with a substantial suppression of IL-1β-induced TF formation, fumonisin B 1 and ISP-1 failed to elicit such effect (Figure xref )."
sparser
"According to Figure xref , inhibition of all kinases was associated with a partial but significant inhibition of IL-1β-induced TF formation with the most pronounced effect observed with the p38 MAPK inhibitor."
TNF affects TRPV1
| 5 11
TNF increases the amount of TRPV1.
| 9
TNF increases the amount of TRPV1. 9 / 9
| 9
reach
"TNF-alpha increases expression of TRPV1 and TRPV4 mRNA, protein and immunostaining in synoviocytes after 8 hr."
reach
"This long-term up-regulation of TRPV1 expression by TNFalpha correlated with enhancement in capsaicin induced calcitonin gene related peptide release (P < 0.05)."
reach
"It is highly likely that TNF-alpha increases expression of TRPV1 and TRPV4 by mediating the up-regulation directly and/or through initiation of downstream events since the inhibitor reduced the immunostaining increase."
reach
"In addition, TNF increases the TRPV1 protein level and number of TRPV1 expressing neurons."
reach
"TNF is known to increase the expression level of TRPV1 by activating TRPV1 dependent ERK signaling, but the influence of this overexpression on the effect of RTX is still unclear [XREF_BIBR]."
reach
"TNFalpha stimulation of cultured DRG neurons produces an increase in TRPV1 receptor protein level after 1 and 2 h of incubation [XREF_BIBR]."
reach
"In summary, our data demonstrate that TNFalpha directly enhances the sensitivity of rat trigeminal neurons to capsaicin via both rapid, non genomic mechanisms as well as sustained genomic regulation in TRPV1 expression."
reach
"In addition, TNF-alpha was also able to produce subsequent upregulation of TRPV1 protein expression when applied to cultured DRG neurons employing a pathway involving extracellular-signal-related kinase rather than p38 signaling."
reach
"It has been shown previously that TRPV1 receptor expression and sensitivity to capsaicin may be modulated by TNFalpha pretreatment [XREF_BIBR, XREF_BIBR - XREF_BIBR]."
TNF binds TRPV1.
| 5 2
| 5 2
reach
"In fact, TRPV1 shows an increase in expression after prior treatment with TNF-alpha in cultured fibroblast like synoviocytes [XREF_BIBR], suggesting a direct interaction of TNF-alpha and TRPV1."
sparser
"For instance, TRPV1 activity is clearly associated with tumor necrosis factor-α (TNF-α)-induced monoarthritis [ xref , xref ]."
sparser
"Our results demonstrate the importance of the synergistic interaction between TNF-α and TRPV1 in the cochlea and suggest that these are important therapeutic targets for treating NIHL."
reach
"Previous studies suggest interactions between TNF and TRPV1, resulting in a modulation of ion channel function and protein expression in the pathophysiology of inflammatory and neuropathic pain [XREF_BIBR, XREF_BIBR, XREF_BIBR]."
sparser
"In this study, we examine the interactions of TRPV1 and TNF for pain processing after intrathecal administration of RTX by using behavioral tests and detection of protein levels in DRG neurons of rats."
sparser
"Previous studies suggest interactions between TNF and TRPV1, resulting in a modulation of ion channel function and protein expression in the pathophysiology of inflammatory and neuropathic pain [ xref , xref , xref ]."
sparser
"In fact, TRPV1 shows an increase in expression after prior treatment with TNF-α in cultured fibroblast-like synoviocytes [ xref ], suggesting a direct interaction of TNF-α and TRPV1."
TNF affects CD4
| 6 10
TNF decreases the amount of CD4.
| 6
TNF decreases the amount of CD4. 6 / 6
| 6
reach
"This down-regulation of CD4 expression by LPS, TNF-alpha, and IL-1 beta occurs at the level of transcription."
reach
"Actually, TNFalpha down-regulates both surface and total CD4 expression in primary human macrophages at the transcription level [XREF_BIBR, XREF_BIBR - XREF_BIBR]."
reach
"TNF-alpha and IL-1 beta, proinflammatory cytokines which are both induced by LPS, also down-regulate surface and total CD4 expression in TCDM."
reach
"Our results show that LPS, TNF-alpha and IL-1 beta selectively down-regulate CD4 expression in primary human macrophages, and that decreased CD4 expression induced by LPS results from endogenous secretion of TNF-alpha and IL-1 beta by the macrophages."
reach
"TNFalpha, IL-1beta and IFN-gamma down-regulate both surface and total CD4 expression in primary human macrophages at the level of transcription [XREF_BIBR, XREF_BIBR - XREF_BIBR]."
reach
"Although prolonged (1 to 5 days) TNFalpha treatment can downregulate CD4 expression in primary human TCDM, surface CD4 levels were not reduced by 2 h of treatment and was therefore not a limiting step for HIV-1 entry."
TNF binds CD4.
| 6
TNF binds CD4. 6 / 6
| 6
sparser
"Elsewhere, bifunctional IFN- γ + TNF- α + CD4 + T-cells are significantly associated with active TB compared to the LTBI group [ xref ]."
sparser
"A marginally significant association between CS-specific IL-2 secretion and protection from infection has been observed in Mozambiquan infants immunised with RTS,S/AS02 ( xref ), and in the Kenyan (Olotu et al ) and American studies ( xref ) CS-responsive IL-2 + CD4 + T cells and TNF + CD4 + T cells were associated with protection against clinical malaria and malaria infection, respectively."
sparser
"Of note, an almost unique CD4 + T cell population producing TNF and IL-2 was associated with this immunization."
sparser
"Mechanistically, tolerance induction requires the concomitant activation of autoreactive T cells and is associated with the down-regulation of the co-stimulatory TNF-receptor superfamily members OX40 and CD30 sustaining CD4(+) T cell survival."
sparser
"Moreover, we found TNF-α amounts produced from LPS-activated GM-DCs are important for CD4 + T cell polarization, with higher TNF-α amounts being associated with increased FOXP3 + Treg generation from naïve CD4 + T cells."
sparser
"Compared with the individual use of the percentage of single TNF-α–producing CD4 T cells, the combined use of CD4 and CD8 T-cell responses was associated with substantial improvement in the NPV (10% increase), PPV (10% increase), OR (48% increase), and sensitivity (34% increase) but a minor decrease in specificity (7%)."
TNF increases the amount of CD4.
| 4
TNF increases the amount of CD4. 4 / 4
| 4
reach
"Treatment of cultures with recombinant cytokines given at concentrations in the range of those induced by HIV-1 indicated that IL-6 and TNF alpha caused an increase of : i) CD4 expression, ii) HIV absorption to uninfected cells, and iii) release of infectious virions by infected cells."
reach
"We examined the hypothesis that one of the pro inflammatory cytokines, tumour necrosis factor-alpha (TNF-alpha), could induce expression of the adhesion molecule CD4 on human eosinophils."
reach
"We also found that TNF-a could induce and maintain CD4 expression in L4E cells, although this is not the factor produced by SO stroma (32)."
reach
"Conversely, neither LPS nor TNF-alpha and IL-1 beta were able to modulate surface CD4 expression on quiescent or phytohaemagglutinin (PHA)-activated lymphocytes."
THBS1 affects SCARB2
1 | 11 4
THBS1 binds SCARB2.
1 | 4 4
1 | 4 4
reach
"Because LIMP-2 is predominantly localized on intracellular membrane bound compartments and exhibits only low levels of cell-surface expression (Okazaki et al., 1992; Suarez-Quian, 1987), it is possible that the interaction between LIMP-2 and TSP-1 does not predominate in the physiological setting, particularly given that TSP-1 is found in the matricellular environment."
sparser
"Because LIMP-2 is predominantly localized on intracellular membrane-bound compartments and exhibits only low levels of cell-surface expression (), it is possible that the interaction between LIMP-2 and TSP-1 does not predominate in the physiological setting, particularly given that TSP-1 is found in the matricellular environment."
reach
"60 TSP1 binds to the CD36, LIMP-2, Emp sequence homology domain (AA 93-155) via its TSR, and oxLDL binds to the site (AA 155-183) next to the CD36, LIMP-2, Emp sequence homology domain."
sparser
"To test whether LIMPII also binds TSP1, a LIMPII peptide corresponding to the TSP1 binding domain of CD36 was expressed as a recombinant glutathione S-transferase (GST) fusion protein."
biogrid
No evidence text available
reach
"We recently showed that the corresponding sequence of the CD36 homolog LIMPII bound TSP1 with high affinity, confirming a functionally identical domain."
reach
"To determine the extent of TSP1 contribution to saliva inhibition of HIV infectivity, clarified saliva samples were passed over affinity columns of immobilized TSP binding LIMPII fusion protein LFP75-155 before virus preincubation."
sparser
"In addition, LIMP-2 can bind to TSP1 ( xref ) and TSP2 (not depicted)."
sparser
"To demonstrate that TSP-1 peptides interacted only with CD36 fusion proteins containing the TSP-1 binding domain ( xref ), their ability to block 125 I–TSP-1 binding to immobilized CD36 and CD36–GST fusion proteins was tested (Fig. xref B )."
THBS1 activates SCARB2.
| 7
THBS1 activates SCARB2. 7 / 7
| 7
sparser
"Activation of CD36 by TSP-1 phosphorylates p38 and JNK, which results in an increased expression of FasL and apoptosis ( xref ), which we saw in our tumor cells in response to ABT-510."
sparser
"The trimeric TSP1 fragment that activates both CD148 and CD36 may be a powerful tool for anti-angiogenesis therapy."
sparser
"Through its original mechanism of action which supposes concomitant disruption of TSP-1:CD47 interaction and enhancement of CD36 activation by TSP-1, TAX2 may inhibit tumor progression while limiting many of the undesired side effects of broadly inhibiting important physiological functions of CD47."
sparser
"TSP-1 activates CD36, a transmembrane glycoprotein found on macrophages and endothelial cells [ xref , xref ]."
sparser
"Moreover, we show that activation of CD36 by TSP-1 down-modulates the VEGF receptor-2 (VEGFR-2) and p38 mitogen-associated protein kinase phosphorylation induced by VEGF-A165, and this effect was specifically abolished by point mutation at C464."
sparser
"Integrin-associated matricellular protein receptors such as CD47 and CD36 have recently been shown to be involved in pathological ROS production. xref Activation of CD47 and CD36 by thrombospondin-1 (TSP1) inhibits NO signaling xref in VSMCs and may contribute to eNOS uncoupling. xref Additionally, knockout studies of CD36 have implicated CD36 activity in the regulation of Nrf2 nuclear export and degradation, xref which ultimately results in higher levels of oxidative stress due to reduced antioxidant expression."
sparser
"Second, in higher concentrations TSP-1 binds and activates CD36, thereby decreasing intracellular cGMP-levels due to interaction with cellular uptake of myristic acid and decreased eNOS-dependent synthesis of nitric oxide [ xref ]."
SLC2A1 affects NRP1
| 12 4
| 12 4
sparser
"These results clearly indicated that specific infection was successfully induced through the interaction between HTLV-1 Env protein at the cell surface and receptor molecule(s) incorporated into the VSV particles—particularly the functional association of the Env with GLUT1 or NRP1 proteins."
sparser
"The fact that NRP-1 and GLUT1 can form a complex in the presence of HTLV-1 Env suggested that these two molecules work together to promote HTLV-1 entry."
sparser
"It was also observed that GLUT1 and NRP-1 could form intracytoplasmic complexes in transfected cells, an association that was greatly enhanced in the presence of Env [ xref ]."
sparser
"As mentioned above, attachment to HSPGs is mediated by the C-terminal region of the SU while NRP-1 and GLUT1 binding occur via the N-terminal region."
sparser
"However, HTLV-1 and HTLV-2 appear to both interact with NRP-1 and GLUT1, explaining why they belong to the same receptor interference group [ xref ]."
reach
"The fact that NRP-1 and GLUT1 can form a complex in the presence of HTLV-1 Env suggested that these two molecules work together to promote HTLV-1 entry."
reach
"As mentioned above, attachment to HSPGs is mediated by the C-terminal region of the SU while NRP-1 and GLUT1 binding occur via the N-terminal region."
sparser
"Since SU are organized as trimers, NRP-1 and GLUT1 could also simultaneously bind to distinct monomer within SU trimers, as reported for the HIV-1 SU [ xref ]."
reach
"These earlier studies on Env and recent work on the receptors now converge to identify the N-terminal domain (NRP-1 and GLUT1 binding) and the C-terminal domain (HSPG binding) of the HTLV-1 SU as critical determinants for HTLV-1 entry."
sparser
"Other evidence supporting a NRP-1/GLUT1- complex comes from reports that a small intracytoplasmic protein called GLUT1CBP or PSD-95/Dlg/ZO-1 can bind both NRP-1 and GLUT1 via its PDZ domain [ xref , xref ]."
sparser
"Such cooperation was also recently functionally demonstrated by data showing that inhibition of HTLV-1 entry into primary astrocytes required the blocking of the interactions with both NRP-1 and GLUT1 [ xref ]."
reach
"Other evidence supporting a NRP-1 and GLUT1- complex comes from reports that a small intracytoplasmic protein called GLUT1CBP or PSD-95/Dlg/ZO -1 can bind both NRP-1 and GLUT1 via its PDZ domain [XREF_BIBR, XREF_BIBR]."
sparser
"The second of these contains residues that were recently shown to be involved in interactions with NRP-1 and GLUT1 ( xref and xref )."
sparser
"GLUT1 and NRP-1 bind distinct regions of the HTLV-1 SU."
sparser
"This reinforces the notion that the direct interaction of SU with both NRP-1 and GLUT1 is required for HTLV-1 entry."
sparser
"As was hypothesized previously, there is now definitive evidence that GLUT1 and NRP-1 bind to distinct regions of SU."
NID1 affects FN1
| 11 4
| 11 4
sparser
"Pericyte recruitment to the EC tube also promotes the upregulation of certain integrin receptors ( α 6 β 1, α 3 β 1, α 1 β 1, and α 5 β 1) on the ECs that mediate the interaction of the EC with fibronectin, nidogen-1, and laminin in the new basement membrane [ xref , xref ]."
sparser
"By using microprotein sequencing, the 110-kDa protein was identified as fibulin-1, a protein of the extracellular matrix that binds to fibronectin, laminin, and nidogen."
sparser
"Integrin-α 3 β, 1 shows the greatest versatility, binding to collagen, laminin, fibronectin, nidogen, and epiligrin."
sparser
"The biochemical evidence that fibulin-1 binds fibronectin and nidogen [10, 11] , the major components of basement membranes and interstitial connective tissues, is consistent with the expression pattern."
sparser
"Integration into basement membranes probably occurs by binding of the HS-chains to laminin and collagen IV and by interaction of the core protein with nidogen [17] and fibronectin [18]."
sparser
"The TBM is a specialized form of the extracellular matrix composed primarily of type IV collagen, laminin, proteoglycans, nidogen, and fibronectin ( xref )."
reach
"Entactin binds to laminin, collagen IV, fibrinogen, and fibronectin."
reach
"The binding of fibronectin to entactin is mediated through the 29 kDa amino terminal fragment of fibronectin and the G2 domain of entactin."
reach
"Entactin also binds to calcium, cells, fibronectin, and fibrinogen (Chakravarti et al., 1990; Yelian et al., 1993; Hsieh et al., 1994; Wu and Chung, 1991)."
sparser
"In addition, a3P, integrin mediates Fn matrix assembly, albeit indirectly via binding of entactin, which apparently in turn binds Fn (Wu et al., 1995)."
sparser
"Indeed, xref recently showed that α3β1 in transfected cells can mediate assembly of both fibronectin and entactin into the ECM."
sparser
"Entactin forms a complex with fibronectin and co-localizes in the extracellular matrix of the embryonal carcinoma-derived 4CQ cell line."
reach
"The binding of fibronectin to entactin is mediated through the 29 kDa amino terminal fragment of fibronectin and the G2 domain of entactin."
sparser
"It is notable that a-dystroglycan binds laminin-1 with high affinity and does not bind nidogen, fibronectin or type IV collagen [39,43]."
sparser
"Type IV collagen is the most abundant component of the BM and serves as the scaffold that binds to laminin, fibronectin, entactin, and proteoglycans to form the mesh-like structure of the BM [ xref , xref ]."
TNF affects PTGER4
3 | 1 3 7
TNF increases the amount of PTGER4.
3 | 1 6
TNF increases the amount of PTGER4. 7 / 7
| 1 6
reach
"Specifically, CsA can suppress TNF production without decreasing TNF mRNA, while either dexamethasone or PGE2 block TNF transcription."
reach
"We conclude that (1) IL-1, TNF-alpha, and PTH, but not IL-6 nor IL-11, can increase the expression of PGHS-2, cPLA2, and PGE2 production in cultured mouse calvariae; (2) IL-4 inhibits PGE2 production in both control and stimulated calvarial cultures by inhibiting PGHS-2 and cPLA2; and (3) IL-4 has an inhibitory effect on bone resorption which is independent of PG production."
reach
"Studies have shown that TNF-alpha, along with IFN-gamma, promotes the expression of HGF, PGE2, and COX-2 levels by allogeneic MSCs, contributing to the inhibition of proliferating T lymphocytes [XREF_BIBR]."
isi
"Also, guava significantly enhanced HGEK-16 cell viability (P < 0.05), and IL-beta1, TNFalpha and PGE2 expression presented a 0.6-fold decrease when exposed to guava and LPS (P < 0.05)."
reach
"In the bioactivity assay, PGE2 levels induced by TNFalpha were reduced to an average of 30% using microspheres loaded with 0.1 nmol CXB per transwell; with microspheres loaded with 0.1 nmol TA, PGE2 production was initially reduced to 3% and gradually recovered to 30% reduction."
reach
"Purified human rIL-1 alpha and IL-1 beta increased the levels of both products in the supernatants of the synovial cells; TNF-alpha raised the PGE2 levels but raised the plasminogen activator activity only weakly and inconsistently."
reach
"Taken together, our results suggest that TNFalpha induced a switch from the PGD2 to PGE2 synthesis pathway by regulating PGE2 synthase expression and/or activity and that activators of PKA markedly potentiated the TNFalpha induced increase in PGE2 through up-regulation of COX2 gene expression."
Transcriptionally active TNF increases the amount of PTGER4. 3 / 3
3 |
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
TNF binds PTGER4.
| 3 1
| 3 1
reach
"Although molecular interactions between TNF-alpha and PGE2 are largely unexplored in human malaria, results presented here show that pfHz induced suppression of PBMC COX-2 gene products induces overproduction of TNF-alpha."
sparser
"As expected, the EP2-R agonist failed to inhibit TNFα-production in EP2-R-deficient cells while the EP4-R agonist did not attenuate TNFα-formation in EP4-R-deficient cells ( Fig. 2 )."
sparser
"The data indicate, that PGE2 can inhibit TNFalpha-formation via both the EP2- and the EP4-receptor and that, however, the EP4-receptor appears to be physiologically more relevant in Kupffer cells since it conferred a high affinity response to PGE2."
sparser
"Exogenous PGE2 inhibited TNFalpha-formation in Kupffer cells lacking either EP2-receptor or EP4-receptor to a similar extent as in control cells, however, 10-fold higher PGE2 concentrations were needed for half maximal inhibition in cells lacking the EP4-receptor than in control or EP2-receptor-deficient cells."
TLR4 affects FN1
| 10 4
| 10 4
sparser
"We propose that EDA + -FN interacts with TLR4 to upregulate the NF-κB pathway, which mediates brain injury after ischemic stroke ( xref )."
sparser
"Several previous studies, including some from our own group, have shown that Fn-EDA interacts with TLR4. xref , xref , xref , xref We hypothesized, therefore, that Fn-EDA may upregulate TLR4 signaling in Apoe −/− mice after the ischemic insult."
sparser
"We next determined whether the interactions of exogenous EDA + -FN and TLR4 upregulate canonical NFκB p65 signaling."
sparser
"Additionally, we demonstrated direct interaction of Fn-EDA with platelet TLR4. xref Based on these findings, we speculate that elevated Fn-EDA in the plasma of Apoe −/− mice may potentiate cerebral thrombosis through the platelet TLR4 pathway."
sparser
"The following observations further support the conclusion that the Fn-EDA/TLR4 axis may contribute to plaque instability: 1) TLR4 interacts with Fn-EDA, xref , xref , xref 2) TLR4 is upregulated in circulating monocytes in patients with unstable angina and at sites of plaque rupture in patients with acute myocardial infarction. xref , xref 3) Lentivirus-mediated knockdown of both TLR2 and TLR4 genes in 5 month-old Apoe −/− mice reduces the plaque vulnerability index in a collar-induced atherosclerosis model. xref 4) TLR4 contributes to Fn-EDA mediated thrombosis and inflammation in experimental models of thrombosis and acute stroke. xref , xref , xref 5) TLR4 contributes to Fn-mediated atherosclerotic lesion progression in 5-month-old Apoe −/− mice. xref "
sparser
"Interestingly, a number of endogenous TLR ligands have been identified in RA synovial tissue and fluid including fibrinogen, HSP60 and 70, 96 and EDA fibronectin that bind to TLR2 and/or TLR4 ( xref , xref )."
sparser
"Since EDA + -FN interacts with TLR4 in vitro , xref we tested the hypothesis that EDA + -FN promotes progression of atherosclerosis through the TLR4 signaling pathway."
reach
"In addition to being involved in the recognition of lipopolysaccharide (LPS), TLR-4 also interacts with endogenous ligands such as heat-shock proteins (HSPs) [8,22], fragments of hyaluronic acid [9], and fibronectin [10]."
sparser
"EDA + FN mice lacking platelet TLR4 showed decreased thrombus formation and a slower thrombus growth rate compared with control mice expressing platelet TLR4, further highlighting the proatherogenic effect of the FN-TLR4 interaction."
reach
"Besides recognizing microbe derived ligands, TLR4 binds various endogenous ligands, including heat shock proteins HSP60 [20], HSP70 [21] and gp96 [22], beta-defensin [23], Tamm-Horsfall protein [24], biglycan [25], fibrinogen [26], surfactant protein [27], low-molecular-weight oligosaccharide fragments of hyaluronan [28], fibronectin [29], and heparansulfate [30]."
reach
"It is therefore possible that FN III 13-14 may also interact with both TLR4 and CD44 to maintain tissue injury."
sparser
"Several in vitro studies suggest that EDA + -FN interacts with Toll-like receptor 4 (TLR4)."
reach
"Since some studies suggest that TLR4 binds specific fibronectin splice variants, hyaluronan and other matrix components in addition to its canonical LPS binding capacity, it is tempting to speculate that TLR4 may act as an EC-sensor of the matrix microenvironment and thereby regulate EC production of MMP-2 and subsequent EC invasion and angiogenesis."
sparser
"Toll-like receptor 4 (TLR4) has been demonstrated to participate in a variety of physiological process such as the immune response, signal transduction, and cell cycle and enzyme regulation. xref xref – xref Endogenous ligands such as endotoxin, hyaluronic acid, fibronectin, and tenascin-C can bind to TLR4 to recruit MyD88 and release nuclear factor-κβ (NF-κB) via a series of intracellular reactions. xref Although TLR4 is associated with cardiac dysfunction in sepsis and myocardial infarction, how it is in the cardiac injury of mice with pulmonary fibrosis remains unclear."
TNF affects THBD
1 | 12
TNF decreases the amount of THBD.
1 | 8
TNF decreases the amount of THBD. 9 / 9
1 | 8
reach
"32 TNF-alpha can down-regulate the expression of thrombomodulin on endothelial cells."
reach
"TNF suppresses transcription of the thrombomodulin gene in endothelial cells and may affect coagulation [XREF_BIBR]."
reach
"Thromobomodulin transgene expression driven by the enhanced PAI-1 promoter in rAAV vector transduced cultured endothelial cells was between 600- and 1000-fold higher than constitutive thrombomodulin gene expression in cultured human umbilical vein endothelial cells and was up-regulated by TGFbeta1 and TNFalpha stimulation which may down-regulate endogenous thrombomodulin gene expression in endothelial cells."
reach
"In the downstream events, TNF-alpha increased TF antigen and activity, and suppressed the expression of thrombomodulin (TM) antigen."
reach
"TNFa and interleukin 1beta induce the expression of endothelial procoagulant activity (tissue factor) and simultaneously downregulate the expression of thrombomodulin, the endothelial surface high-affinity receptor for thrombin, which complexes thrombin to activate the potent anticoagulant protein-C system."
reach
"Tumor necrosis factor (TNF), a mediator of the inflammatory response, induces tissue factor and decreases the expression of thrombomodulin (TM) on endothelial cells, thus shifting the hemostatic properties of the endothelium."
reach
"Suppression of endothelial thrombomodulin expression by TNF-alpha has been documented [XREF_BIBR]."
bel
"TNF alpha and other inflammatory mediators can down-regulate EPCR and TM and IL-6 can depress levels of protein S in experimental animals."
reach
"We conclude that TNF acts primarily to inhibit thrombomodulin transcription."
TNF increases the amount of THBD.
| 4
TNF increases the amount of THBD. 4 / 4
| 4
reach
"In vitro, tumor necrosis factor (TNF) induces endothelial expression of the procoagulant, tissue factor, and downregulation of thrombomodulin, a key component of the thrombomodulin and protein C (PC)/protein S (PS) pathway, which normally maintains an anticoagulant state by inactivating thrombin, preventing further thrombin formation by degrading factors Va and VIIIa, and decreasing plasminogen activator inhibitor activity."
reach
"A major component of this response is a reduction in expression of thrombomodulin, a cell surface cofactor for the activation of protein C. Regulation of thrombomodulin expression by TNF has been reported to occur through multiple mechanisms."
reach
"Suppression of endothelial thrombomodulin expression by TNF-alpha has been documented [XREF_BIBR]."
reach
"TNFalpha and IL-1beta promote thrombosis at the vascular wall by inducing endothelial expression of tissue factor and downregulating expression of thrombomodulin, the endothelial thrombin receptor that plays a key role in the activation of the anticoagulant protein C pathway."
CD4 affects BST2
| 12 1
| 12 1
sparser
"Beside these interesting changes, the specific determinants for CD4, BST-2 and β-TrcP binding remained highly conserved ( xref ) among all the variants xref – xref , xref – xref ."
sparser
"This protein–protein interaction varies according to the particular viroporin analysed; for instance Viral Protein Unique (Vpu) interacts with CD4 receptor and tetherin (BST2), thereby facilitating the budding of virus particles."
sparser
"Mechanistically, tetherin blocks HIV-1 particle release and, therefore, leads to the formation of aggregated viral particles at the host cell membrane, while Vpu mediates interaction of either CD4 or BST2 to BTRC (βTrCP-1), a substrate recognition subunit of the Skp1/Cullin/F-box E3 ubiquitin ligase, leading to their ubiquitination and subsequent proteasomal degradation [ xref ]."
sparser
"Additionally, considering the importance of the structural configuration of Vpu for targeting both BST2 and its other host protein target CD4, as well as the roles of disordered regions in modulating structural orientation or affording structural plasticity that facilitates interaction with target proteins, we further examined whether these conserved hinge region residues orient Vpu in such a way that binding to BST2 and CD4 is favoured."
sparser
"Given that f-actin formation in isolated human CD4-positive lymphocytes is an important mechanism in cell polarisation during cell migration xref , xref , we next investigated the effect of GLP-1(9-36) on f-actin formation in isolated human CD4-positive lymphocytes using flow cytometry analysis."
reach
"Mechanistically, tetherin blocks HIV-1 particle release and, therefore, leads to the formation of aggregated viral particles at the host cell membrane, while Vpu mediates interaction of either CD4 or BST2 to BTRC (betaTrCP-1), a substrate recognition subunit of the Skp1/Cullin/F-box E3 ubiquitin ligase, leading to their ubiquitination and subsequent proteasomal degradation [XREF_BIBR]."
sparser
"To investigate whether our assay allows to map interacting domains within proteins, we analysed a variety of previously described Vpu mutants xref for their capacity to bind CD4 and CD317 ( xref )."
sparser
"Taken together with the BST2 binding data, the results demonstrate that the E28/L33 residues are essential for optimal binding to both BST2 and CD4."
sparser
"It remains to be elucidated whether the hinge region glutamate residue in VpuC contributes towards binding to BST2 and/or CD4, and whether it is involved as a part of an active trafficking signal."
sparser
"In recent years it has become evident that Vpu from HIV-1 is interacting with a number of host factors such as CD4, BST-2 and NTB-A (reviewed in )."
sparser
"Additionally, we show direct binding of HIV-1 Vpu to CD4 and the recently described restriction factor CD317 (also termed Bst-2 or tetherin), which inhibits retroviral particle release from infected cells xref ."
sparser
"However, Vpu also binds the HIV cell surface receptor CD4 and the restriction factor tetherin, promoting their ubiquitination and degradation by bringing them in close proximity to the SCF β-TrCP E3 ligase complex ( xref , xref )."
sparser
"To further define the viruses’ affinity for CD4 we compared the binding of CD4-IgG 2 to cell surface-expressed envelope trimers by flow cytometry."
TNFSF9 affects TLR4
1 | 8 3
1 | 8 3
sparser
"This is followed by the formation of a MyD88- and TRIF-independent complex containing TLR4 and 4-1BBL during the late phase of the response that is required to sustain TNF-α production ( xref )."
sparser
"These results suggested that the TIRAP inhibitor blocked the activation of inflammatory responses during sepsis by inhibiting TLR4 signaling not only the early phase, but also the late phase, and that inhibition of the late-phase interaction between TLR4, TIRAP, and 4-1BBL alleviated LPS-induced sepsis."
sparser
"Because TLR44-1BBL complex formation was demonstrated during sustained macrophage activation ( xref ), we speculated about the formation of a TLR44-1BBL–TIRAP complex during the late phase of TLR signaling; thus, we further examined potential interactions between the 4-1BBL–TIRAP and TRAF6-TAK1-TAB1 complexes."
reach
"These results suggested that the TIRAP inhibitor blocked the activation of inflammatory responses during sepsis by inhibiting TLR4 signaling not only the early phase, but also the late phase, and that inhibition of the late-phase interaction between TLR4, TIRAP, and 4-1BBL alleviated LPS induced sepsis."
reach
"We found that full-length 4-1BBL interacted with TLR4 and induced CREB activation (XREF_FIG)."
sparser
"We found that full-length 4-1BBL interacted with TLR4 and induced CREB activation ( xref )."
biogrid
No evidence text available
sparser
"Interesting in this context, it was shown that TLR signaling induces 4-1BBL expression on the surface of macrophages and the physical interaction of 4-1BBL with TLR-4 is necessary for sustained TNF production ( xref , xref )."
sparser
"The cytoplasmic domain of 4-1BBL was required for its functional association with TLR4 provided that the transmembrane domain of 4-1BBL was also present; however, the isolated cytoplasmic domain of 4-1BBL did not interact with TLR4 ( xref )."
reach
"We conclude that a physical interaction between 4-1BBL and TIRAP is required for signaling downstream of the association between TLR4 and 4-1BBL through the formation of a complex containing TRAF6, TAK1, and TAB1 during the late phase of macrophage activation."
sparser
"Transient TLR4-MyD88 complexes appeared during the first hour after lipopolysaccharide stimulation, and TLR4-4-1BBL interactions were detected between 2 h and 8 h after lipopolysaccharide stimulation."
sparser
"We showed that Toll-interleukin-1 receptor (TIR) domain-containing adaptor protein (TIRAP) and the kinase IRAK2 interacted with 4-1BBL to mediate late-phase TLR4 signaling."
TNFRSF11A affects TNF
| 10 2
| 9 2
sparser
"Although these results suggest that TNF-α induces osteoclast differentiation through TNFR1/TNFR2, there were still two possibilities that TNF-α directly binds to RANK or TNF-α increases endogenous production of some factor(s) that can interact with RANK."
sparser
"RANKL is a cytokine of the TNF family, which binds to its receptor RANK as initially documented in osteoclast precursors and dendritic cells [ xref ]."
reach
"Using this approach, we examined the role of six RANK putative tumor necrosis factor receptor associated factor binding motifs (PTM) (PTM1, ILLMT-REE (286-293); PTM2, PSQPS (349-353); PTM3, PFQEP (369-373); PTM4, VYVSQTSQE (537-545); PTM5, PVQEET (559-564); and PTM6, PVQEQG (604-609)) in osteoclast formation and function."
sparser
"It binds RANK ligand [RANK-L/osteoprotegerin ligand (OPGL)/TNF-related activation-induced cytokine (TRANCE)], a TNF superfamily member that acts as a trimer."
sparser
"OPG competes with RANK (receptor activator of nuclear factor κB [NF-κB]) for binding of RANK ligand (RANKL, OPG1) that is also a TNF family member."
reach
"XREF_BIBR, XREF_BIBR In the downstream cascade, transduction factor TNF receptor associated factors (TRAFs), especially TRAF6, can bind to RANK to activate NF-kappaB and the JNK/AP -1 pathway."
sparser
"Previous studies have reported that increased SOCS3 elevated transforming growth factor-β, TNF-α and RANK ligand (RANKL)-induced osteoclast formation, and promoted precursors to the osteoclast lineage through the inhibition of specific anti-osteoclastic Janus kinase/signal transducer and activator of transcription signals ( xref )."
sparser
"Activated T cells can also trigger activation of DC via CD40–CD40L and TNF-related activation-induced cytokine (TRANCE)-TRANCE-R interactions ( Bachmann et al., 1999 ; Josien et al., 1999 ; Wong et al., 1999 ) ( Fig. 2 )."
sparser
"A functional interaction between RANKL, a member of the tumor necrosis factor (TNF) ligand superfamily and RANK, its cognate TNF-receptor is essential for osteoclast differentiation, survival and activation [ xref ]."
sparser
"On the other hand, the differentiation of precursor cells into osteoclasts depends on the interaction of ODF and RANK (receptor-activator of NFκB), which are members of the TNF and TNF receptor family, respectively."
sparser
"The binding of RANKL to its receptor RANK, a member of the TNF receptor (TNFR) superfamily, recruits and induces the trimerization of adaptor molecules such as TRAF6."
| 1
sparser
"Osteoclast differentiation requires the interaction of RANK (receptor activator of NF kappaB) and RANK ligand, conserved member of the TNF (tumor necrosis factor) receptor and TNF families, respectively."
TNF affects PLAUR
| 1 11
TNF increases the amount of PLAUR.
| 10
TNF increases the amount of PLAUR. 10 / 10
| 10
reach
"Although tumor necrosis factor alpha (TNF) upregulated monocyte uPAR expression, anti-TNF did not influence the endotoxin induced increase in monocyte uPAR expression."
reach
"TNF-alpha for example is known to play an important role in cerebral malaria and enhances uPAR expression in macrophage like U937 cells, colon carcinoma cell lines, and endothelial cells (Van Hinsbergh et al., 1990; Yoshida et al., 1996)."
reach
"To characterize the signal transduction pathways which regulate the uPAR gene, further experiments are currently in progress to study the signalling pathways and the regulatory sequence (s) and transacting factor (s) that contribute to regulation of uPAR gene expression by PMA, TNFa and amiloride."
reach
"We did not exhaustively explore this possibility, but did examine some likely candidates : VEGF, which signals through VEGF receptors to increase MT1-MMP expression XREF_BIBR; HGF, shown to induce MT1-MMP, MMP2, uPA, and uPAR expression in cancer cells XREF_BIBR, XREF_BIBR; and TNFalpha, which enhances uPAR expression by ECs XREF_BIBR."
reach
"Pro inflammatory cytokines, IFN-gamma) and TNF-alpha (not shown), as well as LPS) enhanced uPAR expression."
reach
"UPAR biosynthesis, the uPAR mRNA level and gene transcription are also increased by transforming growth factor beta (TGFss) and dexamethasone in A549 lung carcinoma cells [12], but reports of transcriptional regulation of uPAR mRNA expression by TNFa in any cell type are * Corresponding author."
reach
"While TNFalpha enhanced uPAR gene expression after 24 hours of treatment (twofold increase), it strongly decreased uPA gene expression (more than 70% reduction) compared with nontreated control conditions."
reach
"To investigate whether induction of uPAR gene expression by TNFa or PMA was dependent on de novo protein synthesis, 139 1 2 3 4 - uPAR - -18 S rRNA- 12 3 4 5 Fig. 1."
reach
"Amiloride (1 mM) also markedly inhibited the uPAR mRNA expression induced by CHX and TNFa."
reach
"Since TNFalpha potently induces uPAR expression in cultured hepatic stellate cells [XREF_BIBR], it is interesting to know how hCLS formation induces TGFbeta activation during the development of NASH and how EPA suppresses the process."
TNF binds PLAUR.
| 1 1
| 1 1
reach
"In contrast, the N-terminal fragment of uPA, which binds to uPAR, but lacks the catalytic site, failed to induce MMP-1 production, indicating that uPA stimulated MMP-1 synthesis was plasmin dependent."
sparser
"Upon the combination of TNF and PGE 2 , the increased transcription of HBEGF and PLAUR associated with chromatin opening in their promoter regions, as detected by ATAC-seq (assay for transposase-accessible chromatin-seq) and FAIRE-qPCR (formaldehyde-assisted isolation of regulatory elements-qPCR) ( xref , xref and xref , respectively, and xref )."
TNF affects IL31RA
| 12
| 12
sparser
"Therefore, even if the GpL domain of GpL-TNF did bind irreversibly to PGRN, a huge surplus of “GpL-free” PGRN would have been available in our experiments to block TNFR1/TNFR2 binding by GpL-TNF (or by GpL-TNF in complex with PGRN)."
sparser
"As expected transfection of plasmids encoding sTNF or memTNF resulted in strong reduction of GpL-TNF binding to TNFR2 (Figures xref A,B)."
sparser
"Neither, PGRN samples from Adipogen and R&D Systems, which has been used in reports demonstrating PGRN–TNF receptor interaction, nor HEK293-derived SNs containing untagged PGRN showed an inhibitory effect on binding of a GpL-TNF fusion protein to plastic-bound or cell-expressed TNFR1/2 (Figures xref and xref ; Figures S1, S2, and S4 in Supplementary Material)."
sparser
"Neither pretreatment with PGRN lys nor with PGRN SN showed a significant inhibitory effect on GpL-TNF binding to TNFR2-Fc (Figures xref B,C)."
sparser
"Next, we analyzed the effect of PGRN on GpL-TNF binding to cells transfected with expression plasmids encoding TNFR1 and TNFR2."
sparser
"Therefore, even if the GpL domain of GpL-TNF did bind irreversibly to PGRN, a huge surplus of “GpL-free” PGRN would have been available in our experiments to block TNFR1/TNFR2 binding by GpL-TNF (or by GpL-TNF in complex with PGRN)."
sparser
"In contrast, lysates and SNs of EV-transfected cells (EV lys and EV SN ) supplemented with 2,000 ng/ml soluble TNF showed efficient inhibition of binding of GpL-TNF (Figures xref B,C)."
sparser
"Preincubation of the TNF receptor transfectants with 50,000, 5,000, and 500 ng/ml of sTNF diminished specific binding of GpL-TNF to both receptors completely, for >99 or >90% (Figure xref B)."
sparser
"To rule out that tags and purification- or storage-related effects compromise the potential ability of PGRN to bind TNF receptors, we directly co-expressed PGRN, and as control TNF, in TNFR1- and TNFR2-expressing cells and looked for binding of GpL-TNF."
sparser
"While expression of TNF strongly inhibited binding of GpL-TNF to TNFR1/2, co-expression of PGRN had not effect on the ability of the TNFR1/2-expressing cells to bind TNF."
sparser
"There was again no evidence for an interference of PGRN with the interaction of GpL-TNF and TNFR2."
sparser
"In a prototypical cell-free competition assay with plastic-bound Fc fusion proteins of the TNFR1 and TNFR2 ectodomains (TNFR1ed-Fc and TNFR2ed-Fc), we obtained no evidence for a significant inhibition of GpL-TNF binding to the two TNF receptors by a >1,000 fold excess of commercially available PGRN samples (Figure xref A)."
TNF affects IL1R1
1 | 4 7
TNF binds IL1R1.
| 4 7
| 2 7
reach
"Here we report that blockade of IL-1alpha and beta and TNFalpha binding to IL-1R and TNFR1, respectively, reduced neuropathology in parietal cortex, hippocampus, and thalamus and improved outcome."
sparser
"Interestingly, while the p80 form of the TNF receptor mRNA levels was elevated by both phorbol ester and dibutyryl cAMP, only dibutyryl cAMP increased the TNF binding; phorbol ester treatment decreased the binding activity."
sparser
"Our study confirms the association of SNPs IL1R1 (rs2234650) and TNFA (rs1800629) with risk of vertical transmission."
reach
"In the case of RIP and IL-1 receptor associated kinase (IRAK), kinases that are part of the TNF- and IL-1R complex, respectively, the essential role suggested for these molecules in TNF and IL-1 signalling could be confirmed in the respective knockout mice (see below)."
reach
"On the other hand, application of IL-1ra or TNF binding protein to diet treated ApoE -/- mice resulted in reduced lesion area."
reach
"These cytokines and their receptors have also been reported to be involved in bone loss after estrogen deficiency : for instance, administration of IL-1Ra and TNF binding protein (TNFbp), an inhibitor of TNF, to ovariectomized mice decreased osteoclastogenesis and bone resorption [XREF_BIBR]."
reach
"The binding of TNF to p60 or p80 receptor was determined by preincubating the cells at 37 C for 1 h with 0.6-0.8 / < g/ml of either preimmune or anti-p60 or anti-p80 antibodies before initiating the 0014-5793/94/S7.00 1994 Federation of European Biochemical Societies."
reach
"XREF_BIBR We have earlier found bivariate associations between trauma and IL-1RA and TNF-alpha in a cross-sectional assessment, XREF_BIBR and we decided to explore these relationships longitudinally."
reach
"IL-1 and TNFalpha bind to the receptors IL-1R and TNFR, respectively, and trigger activation of distinct signaling cascades that converge on TGF-beta activated kinase 1 (TAK1), which phosphorylates and activates IKK, leading to activation of NF-kappaB (XREF_FIG) [XREF_BIBR]."
| 2
sparser
"Then the cells were resuspended in essential medium at a concentration of 5 x lO'/ml and incubated for another 16 h at 37 C. Thereafter specific TNF binding to p60 and p80 was determined as described in section 2."
sparser
"Here we report that blockade of IL-1α/β and TNFα binding to IL-1R and TNFR1, respectively, reduced neuropathology in parietal cortex, hippocampus, and thalamus and improved outcome."
TNF decreases the amount of IL1R1.
1 |
Transcriptionally active TNF decreases the amount of IL1R1. 1 / 1
1 |
biopax:ctd
No evidence text available
MME affects F3
| 12
MME binds F3.
| 11
| 11
sparser
"TF chaperone action is thought to require association with the ribosome at the polypeptide exit tunnel and is attributed to TF interactions with emergent nascent polypeptides ( xref ; xref ; xref ; xref ; xref ; xref ; xref )."
sparser
"Therefore, both TF 2 dimers and TF monomers can interact with polypeptides."
sparser
"At the ribosome, TF interacts physically with nascent polypeptides as they emerge from the polypeptide exit tunnel where, it is suggested, hydrophobic segments preferentially contact TF to facilitate folding ( xref ; xref ; xref ; xref )."
sparser
"However, since TF is not an essential protein [ xref ], it is likely that only a fraction of emerging nascent polypeptides interact with TF."
sparser
"Protease protection appears to depend on a hydrophobic interaction of TF with nascent polypeptides."
sparser
"Studies of the Escherichia coli chaperone Trigger Factor (TF) reveal that, while TF can interact with many polypeptides, β-barrel outer membrane proteins are the most prominent substrates."
sparser
"Upon deleting dnaK or dnaJ , the population increase of TF bound to the free ribosomal subunits can be rationalized by the possibility that TF takes over DnaK’s role as a complement in facilitating ribosome assembly ( xref , xref ), while the population increase of the polypeptide-bound TF can be rationalized by the interruption of the pathway in which TF-polypeptide complexes interact with DnaK/DnaJ to transfer the unfolded polypeptides to complete folding ( xref )."
sparser
"Studies of the Escherichia coli chaperone trigger factor (TF) reveal that, though TF can interact with many polypeptides, β-barrel outer-membrane proteins are the most prominent substrates."
sparser
"Second, TF associates with the ribosome to sequester and protect polypeptides just as they emerge from the peptide exit tunnel [ xref ] and this association is crucial for its in vivo function [ xref ]."
sparser
"Moreover, heat shock and TF overproduction affected GroEL binding to other denatured polypeptides in distinct ways; only TF promoted binding to certain polypeptides, whereas only phosphorylation increased binding to others."
sparser
"Moreover, heat shock and TF overproduction affected GroEL binding to other denatured polypeptides in distinct ways; only TF promoted binding to certain polypeptides, whereas only phosphorylation increased binding to others."
MME inhibits F3.
| 1
MME inhibits F3. 1 / 1
| 1
sparser
"Hookworm larvae can release a family of protein called “ancylostoma-secreted proteins (ASP)” [ xref , xref , xref ] and can secrete low-molecular weight polypeptides which inhibit clotting factor Xa and tissue factor VIIa [ xref ]."
FN1 affects PLAUR
2 | 1 5 4
FN1 binds PLAUR.
2 | 5 4
2 | 5 4
sparser
"It has been shown in vitro that uPAR crucially influences integrin function ( xref ): the presence of uPAR inhibited β 1 integrin– mediated cell binding to fibronectin, whereas uPAR favored β 2 integrin–dependent monocyte adhesion to fibrinogen, one of the adhesive ligands of Mac-1."
sparser
"This could potentially explain the direct effect of uPA–PAI-1 on Fn binding to uPAR–α5β1."
sparser
"Moreover, the direct effect of uPA–PAI-1 on Fn binding to uPAR–α5β1 suggests the uPAR-binding site may be positioned close to the Fn-binding site."
omnipath
No evidence text available
omnipath
No evidence text available
reach
"Interestingly, although only a small pool of the total beta1 integrins is involved, the formation of these complexes switches the ligand specificity of cell binding from integrin mediated fibronectin binding to uPAR mediated vitronectin binding (see below)."
sparser
"This signaling pathway was additionally enhanced by uPA binding to uPAR and fibronectin binding to alpha5beta1-integrin."
sparser
"Since uPAR does not directly bind to FN, the preponderance of published data, including our own, allows the conclusion that MS#479 disrupts the existing interface between uPAR and the integrin and stops the signaling cascade."
reach
"When the association between uPAR and integrin or integrin and fibronectin are interrupted either by reduction of surface uPAR expression, or by other means, human carcinoma cells enter a state of protracted dormancy."
reach
"This activation was maximal when uPAR was bound to uPA and alpha5beta1 to FN."
reach
"This signaling pathway was additionally enhanced by uPA binding to uPAR and fibronectin binding to alpha5beta1-integrin."
FN1 increases the amount of PLAUR.
| 1
FN1 increases the amount of PLAUR. 1 / 1
| 1
isi
"Furthermore, gene expression level of MMP-9, MMP-7, urokinase plasminogen activator (uPA), uPA receptor (uPAR) and fibronectin were significantly decreased by morin hydrate treatment."
TNF affects AQP1
| 11
TNF decreases the amount of AQP1.
| 7
TNF decreases the amount of AQP1. 7 / 7
| 7
reach
"No significant differences in Aqp-1 were found for untreated cells between the 24 hour and 1 week time points, but LPS and TNF-alpha treated cells had significantly reduced Aqp-1 expression at the recovery time point as compared with 24 hour treatment (p < 0.01)."
reach
"The results, depicted in XREF_FIG B, show that TNF-alpha treatment downregulates the expression of both AQP1 and AQP5 (0.183 +/- 0.01 and 0.083 +/- 0.01-fold p < 0.001, respectively), as previously reported [XREF_BIBR]."
reach
"Furthermore, our results show that TNF-alpha treatment downregulates AQP1 expression in endothelial cells, suggesting that SAH induced inflammatory activation might be responsible for the observed SAH mediated decrease of AQP1."
reach
"TNF-alpha Decreases AQP1 and AQP5 Expression in BEAS 2B Cells."
reach
"As seen in XREF_FIG A, AQP1 mRNA expression in HK2 cells was downregulated by a combined TNFalpha plus IL-1beta treatment."
reach
"Suppression of AQP1 transcription by inflammatory TNF-alpha is restrained by KLF2."
reach
"Interestingly, B6-RPE07 cells expressed AQP1 in vitro, and TNF-alpha downregulated AQP1 protein expression in those cells."
TNF increases the amount of AQP1.
| 4
TNF increases the amount of AQP1. 4 / 4
| 4
reach
"However, our data showed that TNF-alpha treatment strongly modulates AQP1 expression in B6-RPE07 cells in vitro."
reach
"Results of AQP1 and AQP5 determination found that HBO and TNF-alpha antagonist would upregulate the expression of AQP1 and AQP5 which was inhibited in rats with ALI."
reach
"We found that TNF-alpha induced a dose dependent down-regulation of AQP1 expression (P < 0.01) at mRNA (XREF_FIG) and protein level (XREF_FIG) and a dramatic decrease in AQP5 gene expression level (about 80% of control) with all the used doses (P < 0.001) (XREF_FIG), paralleled by a comparable trend at protein level (XREF_FIG)."
reach
"Suppression of AQP1 transcription by inflammatory TNF-alpha is restrained by KLF2."
TIMP1 affects LRP1
1 | 1 9
1 | 1 9
hprd
No evidence text available
reach
"The characterisation of the TIMP-1 and LRP-1 interaction could be physiologically relevant in some neurodegenerative disorders."
reach
"To gain insight into the interaction between TIMP-1 and LRP-1, we considered conformational changes that occur when a ligand binds to its receptor."
reach
"Intriguingly, although both TIMP-1 mutants bound to LRP-1, F12A and K47A mutations prevented the biological effects associated with the TIMP-1 and LRP-1 interaction."
reach
"Indeed, we and others have reported that TIMP-1 directly bound to LRP-1 at the plasma membrane of mouse cortical neurons, leading to cell morphology changes XREF_BIBR, XREF_BIBR."
sparser
"TIMP-1 complex binds to LRP with high affinity and that the binding determinant for LRP appears to reside on MMP-9."
reach
"ELISA to analyse binding of TIMP-1 to LRP-1."
reach
"Thus, proMMP-9 and TIMP-1 directly interacts with LRP-1, leading to its endocytic uptake and degradation by lysosomal proteases [XREF_BIBR]."
reach
"In this study, we combined NMA and MD simulations with biological experiments to gain insight into the TIMP-1 and LRP-1 interaction."
reach
"We have thus hypothesised that alteration of these protein dynamics could modify the TIMP-1 and LRP-1 interaction."
reach
"The data obtained using in silico simulations and biological experiments highlight the relevance of protein dynamics in the TIMP-1 and LRP-1 interaction and associated biological effects."
PLAUR affects ITGAM
1 | 7 3
1 | 7 3
sparser
"The extensively glycosylated uPAR binds to the same C-terminal lectin domain of CD11b that had previously been shown to prime Mac-1/CR3 for cytotoxic degranulation in response to beta-glucan."
sparser
"If the uPAR-CD11b interaction is central to metastatic outgrowth, ATN-658 may be targeting the most clinically relevant and actionable aspect of metastasis."
sparser
"Although we cannot rule out a steric effect of ATN-658 on the uPAR interaction with a5β1, we hypothesize that ATN-658 may alter global integrin clustering and signaling through the inhibition of the CD11b-uPAR interaction."
reach
"CD11b, also known as Mac1, a leukocyte alpha M beta 2 -integrin receptor that binds fibrinogen, can interact with uPAR [6]."
sparser
"Although uPAR was associated with CD11b (CR3) on live resting cells, polarized migratory HRPE cells were found to dissociate uPAR from CR3; uPAR then translocated to anterior pole of the cell, where it enhanced PAI-1-inhibitable local proteolytic activity."
sparser
"The contribution of each of these interactions to tumor progression and the molecular mechanisms that are downstream of uPAR-CD11b binding remain to be elucidated and are a major focus for future studies."
reach
"Next, we investigated whether the lack of effect by the disubstituted phosphorylation like variant can be exclusively observed in cells of the myelomonocytic lineage, where uPAR interacts with the beta2-integrin CD11b and CD18 or Mac-1."
sparser
"In that regard, a peptide, M25, that blocked the uPAR-CD11b interaction was demonstrated to also inhibit the interaction of uPAR with β1 integrins (32)."
sparser
"ATN-658 blocks the CD11buPAR interaction, which leads to the hypothesis that uPAR may actually function to promote metastasis xref ."
biogrid
No evidence text available
reach
"One hypothesis is that uPAR on a tumor cell may interact with CD11b on a leukocyte in the pre-metastatic niche in trans and this interaction may mediate survival and outgrowth of the uPAR expressing tumor cells, possibly by dampening T cell or innate immune response at the metastatic site."
IL1R1 affects IL10
| 3 7
| 3 7
sparser
"When only IPD-WRF patients were considered; the allele distribution of IL1R1 rs2160227 (χ 2  = 5.62, p = 0.03), rs13020778 (χ 2  = 5.73, p = 0.02), rs3917267 (χ 2  = 3.72, p = 0.05) and IL4 rs2227284 (χ 2  = 3.76, p = 0.05) and the genotype distribution of IL10 rs3024509 (χ 2  = 7.70, p = 0.02), IL1R1 rs3917254 (χ 2  = 13.40, p = 0.001), NFKBIZ rs645781 (χ 2  = 13.86, p = 0.001) and rs677011 (χ 2  = 9.06, p = 0.01) variants were associated with IPD risk."
reach
"When removing 37 cases with a history of PTB (6 of which resulted in PTB in this study), the IL-1Ra x IL-6 interaction was marginally significant (P = 0.068) and the IL-1Ra x IL-10 interaction was significant (P = 0.001)."
reach
"The interaction between IL-1Ra and IL-10 was also significant, indicating that mothers with high IL-1Ra and non detectable IL-10 were at greatest risk for PTB."
reach
"When removing 33 cases with preeclampsia (5 of which resulted PTB in this study), the IL-1Ra x IL-6 interaction was marginally significant (P = 0.072) and the IL-1Ra x IL-10 interaction was significant (P = 0.003)."
sparser
"In addition to CD101 being associated with increased Treg function, IL1R1 expression has been associated with increased Treg and anti-inflammatory IL10 secretion [ xref ]."
reach
"Our results indicate that in pregnant Hispanic women aged 14 to 40 years, at 22 to 24 weeks gestation, IL-1Ra with IL-6 had a direct interaction while IL-1Ra interacted inversely with IL-10 to predict PTB."
reach
"The interaction between IL-1Ra and IL-6 remained significant in the smaller model (chi 2 = 3.91, P = 0.048) as did the interaction between IL-1Ra and IL-10 (chi 2 = 8.96, P = 0.003)."
reach
"The IL-1Ra x IL-6 interaction was not significant (P = 0.159); however, the IL-1Ra x IL-10 interaction was significant (P = 0.003)."
reach
"The interaction between IL-1Ra and IL-6 and between IL-1Ra and IL-10 was significant (Wald = 4.01, P = 0.04 and Wald = 8.84, P < 0.003, respectively) and was also predictive of PTB."
sparser
"However, suppression of IL-1R gene expression by IFN-gamma and IL-10 was associated with decreased tyrosine phosphorylation and nuclear translocation of the IL-4/IL-13-inducible transcription factor, Stat6, suggesting a potential mechanism by which IFN-gamma and IL-10 may mediate their suppressive effects."
VLDLR affects THBS1
| 4 5
| 3 5
reach
"Recently, it was also shown that thrombospondin-1 binds to Apoer2 and VLDLR in the brain where it participates in the chain migration of postnatal neurons along the rostral stream."
reach
"Thrombospondin-1 binds to ApoER2 and VLDL receptor and functions in postnatal neuronal migration."
sparser
"And the proliferation of microvascular endothelial cells can be inhibited by the interaction of TSP-1 with very low density lipoprotein receptor (VLDLR) ( xref )."
sparser
"The proliferation of HMVECs could be inhibited by the interaction of TSP1 with the very low density lipoprotein receptor (VLDLR)."
sparser
"Using adenovirus-mediated gene transfer experiments, we demonstrate that the very low density lipoprotein receptor can also bind and internalize TSP-1."
reach
"Similarly, we identified Thrombospondin-1 (THBS1), which binds to LRP8 (a.k.a. APOER2) and VLDLR receptors, also receptors for reelin, and seems to play a role in murine postnatal neuronal migration, as well as in synaptogenesis XREF_BIBR, XREF_BIBR."
reach
"In contrast to these antiangiogenic phenomena, TSP-1 may also bind ApoER2 (apolipoprotein E receptor 2) and VLDLR to promote neuronal migration."
reach
"has confirmed the interaction between the VLDLR and TSP-1."
THBS1 binds VLDLR and LRP8. 1 / 1
| 1
sparser
"Recently, it was also shown that thrombospondin-1 binds to Apoer2 and VLDLR in the brain where it participates in the chain migration of postnatal neurons along the rostral stream ( xref )."
TLR4 affects ENO1
| 5 4
| 5 4
sparser
"These well-documented data led us to evaluate the binding of ENO1 to TLR4."
reach
"Further to our present results that show ENO1 binding to TLR4, it would be interesting to study the direct interaction of ENO1 TLR4 and CD14 by surface plasmon resonance technology for better understanding of ENO1 action and to highlight the specific pathways involved."
reach
"This observation suggests that citrullination does not alter ENO1 binding to TLR4 or subsequent inflammatory response, while a loss of function has been reported for other proteins such as MBP-1 in multiple sclerosis XREF_BIBR."
sparser
"In order to compare the binding of ENO1 and LPS to TLR4, we performed a competitive binding assay with ENO1 and FITC-labelled LPS using HEK-Blue hTLR4 cells."
reach
"These well documented data led us to evaluate the binding of ENO1 to TLR4."
sparser
"These results suggest that ENO1 binds TLR4 to induce a pro-inflammatory response."
sparser
"These results suggest that ENO1 binds TLR4 but not in the same manner as LPS."
reach
"These results suggest that ENO1 binds TLR4 to induce a pro inflammatory response."
sparser
"Further to our present results that show ENO1 binding to TLR4, it would be interesting to study the direct interaction of ENO1 TLR4 and CD14 by surface plasmon resonance technology for better understanding of ENO1 action and to highlight the specific pathways involved."
OLR1 affects TLR4
| 9
OLR1 binds TLR4.
| 8
| 8
sparser
"Finally, we hypothesized that TLR4 may interact with MAP kinases upon oxLDL treatment in SMCs xref , xref ."
sparser
"Immunoprecipitation and immunofluorescence studies demonstrated that TLR4 was associated with Src on the plasma membrane upon oxLDL stimulation."
sparser
"The general tyrosine kinase inhibitor Genistein, but not its inactive analog Daidzen or inhibitors of PI3 kinase (LY294002 and Wortmannin), blocked CD36-TLR4-TLR6-dependent activation of NF-κB-reporter gene expression ( xref ) Notably, treatment with the Lyn kinase inhibitor PP1, but not the inactive analog PP3, replicated these inhibitory effects on CD36-TLR4-TLR6 signaling and blocked the physical association of CD36 with TLR4 and TLR6 in oxLDL-treated monocytes ( xref )."
sparser
"For example, minimally OxLDL interacts with TLR4 and with the scavenger receptors CD14 and CD36 [ xref ]."
sparser
"This study demonstrates that TLR4, IL-1β, TNF-α, MCP-1 and MMP-2 expression is increased in the smooth muscle cells near the lipid core region in atherosclerotic plaques, and that oxLDL and TLR4 interact to facilitate inflammatory secretion in the primary SMCs."
sparser
"Recently, we reported that resveratrol inhibiting TLR4 expression was associated with suppressing Akt phosphorylation in ox-LDL-stimulated platelets [ xref ]."
sparser
"When oxLDL binds TLR4 and CD14 on macrophages, apoptotic cell phagocytosis is inhibited, the scavenger receptor CD36 is upregulated, and oxLDL uptake is increased, leading to atherosclerosis initiation xref ."
sparser
"Taken together, we have identified that TNC produced by oxLDL-stimulated macrophages increases foam cell formation through TLR4 and scavenger receptor CD36."
OLR1 activates TLR4.
| 1
OLR1 activates TLR4. 1 / 1
| 1
sparser
"We concluded that CK(-) granulosa cells are protected against oxLDL-dependent apoptosis by TLR4, whereas, in CK(+) cells, oxLDL-induced TLR4 activation triggers nonapoptotic cell death."
IL1B affects CD44
| 2 7
IL1B increases the amount of CD44.
| 7
IL1B increases the amount of CD44. 7 / 7
| 7
reach
"Therefore, it is very likely that CD44 is related to hyaluronic acid production in human uterine cervix.Our study is the first report that IL-1beta increases the expression of CD44 mRNA in cultured human cervical fibroblasts."
reach
"IL-1beta, at concentrations from 1 to 100 pg/ml, stimulated the expression of CD44 mRNA in a dose dependent manner."
reach
"Expression of CD44 mRNA induced by interleukin-1beta in human cultured uterine cervical fibroblasts."
reach
"Role of activating protein-1 and high mobility group-I (Y) protein in the induction of CD44 gene expression by interleukin-1beta in vascular smooth muscle cells."
reach
"Northern analysis showed that IL-1beta promoted a dose- and time dependent induction of CD44 mRNA which reached 6.6-fold after 48 h, and nuclear run-on analysis showed that IL-1beta increased the rate of CD44 gene transcription within 8 h of stimulation."
reach
"Regulation of CD44 gene expression by the proinflammatory cytokine interleukin-1beta in vascular smooth muscle cells."
reach
"TG2 overexpression in MCF7 cells increased the surface expression of breast cancer stem cell marker CD44, and IL-1beta stimulation of MCF7_TG2 breast cancer cells further increased CD44 expression (Additional file 1 : Figure S3)."
IL1B binds CD44.
| 2
| 2
sparser
"Despite lack of increased expression of CD44, or expression of novel splice variants, we have demonstrated increased binding of exogenous fl-HA by CD44 following stimulation with either IL-1β or 25mM -glucose."
sparser
"Furthermore, blunted crystal phagocytosis was associated with attenuated induction of IL-1β expression and production by CD44 deficient macrophages."
VEGFA affects CRIM1
| 5 3
| 5 3
sparser
"It has also been shown that CRIM1 is able to interact with VEGFA, suggesting that CRIM1 modulates the delivery of VEGFA from the podocytes to the glomerular endothelial cells, thus regulating the release of this growth factor from the site of production [ xref ]."
reach
"In the current study, based on the known Vegfa binding by Crim1 and the expression of Crim1 in retinal vasculature, we tested the hypothesis that Crim1 is involved in the autocrine activity of Vegfa."
reach
"Based on known Vegfa binding by Crim1 and Crim1 expression in retinal vasculature, where angiogenesis is known to be Vegfa dependent, we tested the hypothesis that Crim1 is involved in the regulation of Vegfa signaling."
reach
"Our previous work showed that Crim1 binds and regulates VEGF-A activity in vivo, with Crim1 KST264 and KST264 displaying excessive VEGF-A diffusion away from the podocytes of the renal glomerulus (where Crim1 and VEGF-A are co-expressed), resulting in increased activation of VEGFR-2 in adjacent vascular endothelial cells."
sparser
"In the current study, based on the known Vegfa binding by Crim1 ( xref ) and the expression of Crim1 in retinal vasculature, we tested the hypothesis that Crim1 is involved in the autocrine activity of Vegfa."
sparser
"Based on known Vegfa binding by Crim1 and Crim1 expression in retinal vasculature, where angiogenesis is known to be Vegfa dependent, we tested the hypothesis that Crim1 is involved in the regulation of Vegfa signaling."
sparser
"Another study has provided evidence that Crim1 can physically bind signaling ligands such as Vegfa, Pgf or Pdgf before their secretion ( xref )."
sparser
"Combined, these data support a model in which CRIM1 regulates VEGFA autocrine activity in the previously defined ‘private loop’ ( xref ) and is consistent with the observation that Crim1 can form physical complexes with Vegfa ( xref )."
THBS1 affects ITGB3
2 2 4 |
THBS1 binds ITGB3.
2 2 2 |
2 1 2 |
biogrid
No evidence text available
biogrid
No evidence text available
hprd
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
1 |
hprd
No evidence text available
THBS1 activates ITGB3.
2 |
THBS1 activates ITGB3. 2 / 2
2 |
omnipath
No evidence text available
omnipath
No evidence text available
NRP1 affects FN1
| 4 4
| 4 4
reach
"NRP-1 binds with FN."
reach
"NRP-1 achieves this function through complementary utilization of extracellular and intracellular protein domains that allow binding between FN and NRP-1 and activation of the nonreceptor tyrosine kinase c-Abl."
reach
"Indeed, we observe that NRP-1 co-distributes with alpha5beta1 and mutation of S612 in NRP-1 markedly impairs FN fibril assembly and disrupts FN binding with NRP-1."
sparser
"Since prior studies have indicated that NRP-1 can transduce intracellular signals by binding with GIPC ( xref ), we also investigated the role of GIPC in FN fibril assembly by NRP-1."
sparser
"Surprisingly, rescue of fibronectin binding following Nrp1 knockdown was only seen using vectors carrying full-length Nrp but not Nrp constructs lacking the C-terminal PDZ-binding motif, suggesting coupling between integrin and PDZ-domain proteins."
sparser
"Indeed, we observe that NRP-1 co-distributes with α5β1 and mutation of S612 in NRP-1 markedly impairs FN fibril assembly and disrupts FN binding with NRP-1."
sparser
"NRP-1 binds with FN."
reach
"First, to assess FN binding with NRP-1, b-FN was precipitated from LX2 cell lysates collected from RFP and NRP-1 overexpressing cells incubated with b-FN and loaded into SDS-PAGE for Western blot analysis of NRP-1 and b-FN."
TNF affects CXCR4
4 | 3
TNF increases the amount of CXCR4.
4 |
Transcriptionally active TNF increases the amount of CXCR4. 4 / 4
4 |
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
TNF binds CXCR4.
| 3
| 3
sparser
"Mammalian CXCR4 forms with TNFalpha, several HSP proteins and GDF5 an activation cluster involved in monocyte LPS signal transduction [ xref ] and also acts synergistically with the colony-stimulating factor mediated mobilization of hematopoietic stem cells [ xref , xref ]."
sparser
"The resulting MUC1 interacts with activated CXCR4 to downregulate TNFα expression."
sparser
"At one month of evolution, prehepatic portal hypertensive-rats present increased SDF-1 alpha levels in the hippocampus and cerebellum associated with increased TNF-α and CXCR4 levels in the hippocampus [ xref ]."
TNF affects ABCA1
1 | 6
TNF increases the amount of ABCA1. 6 / 6
| 6
reach
"The expression of ABCA1 was increased by 5 ng/ml or 10 ng/ml TNF-alpha compared with control group, and was inhibited by 20 ng/ml TNF-alpha."
reach
"However, the role for TNF remains controversial since other studies have shown that TNF enhances ABCA-1 expression and the efflux of cholesterol in peritoneal macrophages stimulated with ApoA-I and since evidences from studies performed in murine models are also contentious."
reach
"Interestingly, TNFalpha treatment increased ABCA1 promoter activity and ABCA1 mRNA levels, and increased liver X receptor alpha protein expression, but had no effect on retinoid X receptor alpha and retinoic acid receptor alpha levels."
reach
"Therefore they concluded that TNF-alpha signaled primarily through NF-kappaB to induce ABCA1 expression in macrophages."
reach
"Thus, TNFalpha signals primarily through NF-kappaB to induce ABCA1 expression in macrophages."
reach
"In our study, the induction of ABCA1 expression by TNF-alpha was prevented by pre-treatment of GW9662."
Transcriptionally active TNF increases the amount of ABCA1. 1 / 1
1 |
biopax:ctd
No evidence text available
TLR4 affects MIF
| 5 2
| 5 2
sparser
"No evidence of an epistatic interaction between these TLR4 polymorphisms and MIF polymorphisms was found."
reach
"XREF_BIBR Under lipopolysaccharide (LPS) stimulation, MIF, CD74 and toll like receptor 4 (TLR4) could form a complex that significantly stimulates cell proliferation."
reach
"In view of previously published work suggesting a role for MIF in the expression level of TLR4 XREF_BIBR, XREF_BIBR, these results suggest an association between TLR4 and MIF in patients with autoimmune disease."
sparser
"Interactions between MIF, TLR4 and TCR/CD3 are complex and understanding their nature could have translational impacts on immunomodulatory approaches for treating inflammatory and autoimmune diseases."
sparser
"Additionally, no evidence for gene-gene interaction between TLR4 polymorphisms and the previously associated MIF gene polymorphisms was found (p = 0.40)."
sparser
"These findings herein suggest that the cytoprotective functions of HO-1 in LPS-induced lung injury are associated with negative regulation of lung MIF and TLR4-induced inflammatory response."
sparser
"Upregulation of MIF, CD74 and TLR4 are associated with increasing clinical stage and provide an opportunity as novel gastric cancer chemoprevention and/or treatment strategy."
THBS1 affects LRP8
| 2 5
| 1 5
reach
"In contrast to these antiangiogenic phenomena, TSP-1 may also bind ApoER2 (apolipoprotein E receptor 2) and VLDLR to promote neuronal migration."
reach
"Similarly, we identified Thrombospondin-1 (THBS1), which binds to LRP8 (a.k.a. APOER2) and VLDLR receptors, also receptors for reelin, and seems to play a role in murine postnatal neuronal migration, as well as in synaptogenesis XREF_BIBR, XREF_BIBR."
reach
"Recently, it was also shown that thrombospondin-1 binds to Apoer2 and VLDLR in the brain where it participates in the chain migration of postnatal neurons along the rostral stream."
reach
"Blake et al reported that TSP-1 promoted neural cell migration by binding to ApoER2 in postnatal neuronal migration [XREF_BIBR]."
sparser
"Similarly, we identified Thrombospondin-1 ( THBS1 ), which binds to LRP8 (a."
reach
"Thrombospondin-1 binds to ApoER2 and VLDL receptor and functions in postnatal neuronal migration."
THBS1 binds VLDLR and LRP8. 1 / 1
| 1
sparser
"Recently, it was also shown that thrombospondin-1 binds to Apoer2 and VLDLR in the brain where it participates in the chain migration of postnatal neurons along the rostral stream ( xref )."
SPP1 affects SDC4
| 4 3
| 4 3
reach
"Therefore, we asked whether the binding of syndecan-4 to OPN is dependent on HS or CS chains."
reach
"OPN and syndecan-4 proteins were immunoblotted in the bound fraction from the anti-syndecan-4 antibody coupled column but not from the control column, indicating the presence of association between OPN and syndecan-4."
sparser
"We further tested whether the interaction of OPN and syndecan-4 occurs under physiological conditions."
reach
"Therefore, it is of importance to examine whether syndecan-4 can associate with OPN and modulate OPN function."
sparser
"Therefore, we examined whether syndecan-4 binds to OPN in vitro."
sparser
"Therefore, it is of importance to examine whether syndecan-4 can associate with OPN and modulate OPN function."
sparser
"In addition, we confirmed the association of OPN and syndecan-4 by using genetically manipulated CHO cells transiently expressing human OPN, syndecan-4, or both OPN and syndecan-4 (Fig. S4, available at)."
SPP1 affects ITGB3
1 2 | 2 2
1 | 2 2
hprd
No evidence text available
sparser
"Similarly, blockade of the interaction of integrin beta3 with OPN inhibited VSMC adhesion induced by OPN."
sparser
"CD44, a gene found in the dormancy expression profile which interacts with ITGB3 and osteopontin to mediate adhesion and signalling (reviewed in [ xref ] and [ xref ]), was also upregulated at the protein level (p=0.01)."
reach
"Moreover, evidence show that REL can interact with LYN and FCER1G genes and SPP1 can interact with ITGB3."
reach
"It has been shown that ITGB3 and ITGAV subunits together bind to SPP1 to generate stable adhesions between the maternal-fetal interface in pigs after the initial attachment of conceptus trophoblast to the endometrial luminal epithelium XREF_BIBR, XREF_BIBR."
SPP1 binds ITGAV and ITGB3. 2 / 2
2 |
omnipath
No evidence text available
omnipath
No evidence text available
SIRPA affects PTK2B
| 2 5
| 2 5
reach
"Skaphom, ADAP and Pyk2 associate constitutively with Shps1, but become tyrosyl phosphorylated upon adhesion [34]."
reach
"Pyk2 recruitment to SHPS-1 is mediated via the interaction of Pyk2 Tyr402 and the Src in response to IGF-I."
reach
"Recruitment of FYB and SLAP -130 to SHPS-1 required SKAP55hom/R, whereas PYK2 associated with SHPS-1 independently."
reach
"Thus, Pyk2 recruitment to SHPS-1 plays an important role in regulating the IGF-I-stimulated mitogenic response."
reach
"Recruitment of Pyk2 to SHPS-1 signaling complex is required for IGF-I-dependent mitogenic signaling in vascular smooth muscle cells."
sparser
"Recruitment of FYB/SLAP-130 to SHPS-1 required SKAP55hom/R, whereas PYK2 associated with SHPS-1 independently."
sparser
"We reconstituted the interaction of SHPS-1 with either PYK2 or SKAP55hom/R ()."
PDGFRB affects OLR1
| 4 3
| 4 3
sparser
"Importantly, OLR1 and PDGFRβ were associated in close proximity in the plasma membrane."
reach
"To further identify the interaction between OLR1 and PDGFRbeta, we performed the proximity ligation assay using DuoLink."
reach
"To test this hypothesis, we explored whether there is a functional interaction between PDGFRbeta and OLR1 in VSMCs."
reach
"The combination of anti-PDGFRbeta and anti-OLR1 antibodies, not the anti-PDGFRbeta antibody alone, showed that OLR1 interacted with PDGFRbeta in close proximity in the plasma membrane of VSMCs (XREF_FIG)."
sparser
"To test this hypothesis, we explored whether there is a functional interaction between PDGFRβ and OLR1 in VSMCs."
sparser
"The combination of anti-PDGFRβ and anti-OLR1 antibodies, not the anti-PDGFRβ antibody alone, showed that OLR1 interacted with PDGFRβ in close proximity in the plasma membrane of VSMCs ( xref )."
sparser
"To further identify the interaction between OLR1 and PDGFRβ, we performed the proximity ligation assay using DuoLink."
ITGAM affects CD4
| 7
| 7
sparser
"Since the accumulation of CD11b + TLR-2 + CD4 + T cells in the CNS was associated with increasing neurodegeneration, future experiments are required to assess the pathogenic role of CD11b + TLR-2 + CD4 + T cells in regards to their possible neurodegenerative effector functions."
sparser
"The inhibitory effect of Sema3E was associated with a reduction of pulmonary CD11b + conventional dendritic cells and regulation of CD4 + T-cell cytokine response."
sparser
"Administration of 56-5 to mice increased disease progression in an experimental autoimmune encephalomyelitis model and this was associated with a considerable increase in the infiltration of CD4(+) T-cells, CD11b(+) monocytes and F4/80(+) macrophages in the spinal cord."
sparser
"Protection against SLE-mediated GN in Sle123 →ApoA-I tg mice was associated with reductions in kidney infiltrating CD4 + T cells ( xref ) as well as lower CD11b + monocytic and NIMPR14 + neutrophil infiltrates ( xref )."
sparser
"We hypothesized that the impairment in CD4 + T cell stimulation associated with CD11b + cells could result from the induction of a suppressor mechanism in CD11b + cells, as suppressor macrophages that induce T cell anergy have previously been described in mice harboring patent schistosome infections xref , xref ."
sparser
"Our data suggest that the accumulation of GM-CSF-producing CD11b + CD4 + T cells is associated with disease progression in EAE, and that early anti-VLA-4 mAb therapy can prevent the accumulation of GM-CSF + CD11b + CD4 + T cells in the CNS by administration early in the course of disease progression."
sparser
"Taken together, these data support the early use of anti-VLA-4 mAb treatment to induce neuroprotection in progressive forms of CNS autoimmune disease by blocking the accumulation of GM-CSF-producing CD11b + CD4 + T cells in the CNS."
IL1B affects CD4
| 3 4
IL1B binds CD4.
| 3 1
| 3 1
sparser
"Factors released from the interaction between IL-1β-competent myeloid cells and CD4 + T cells are highly toxic to neurons."
sparser
"In xref and xref , it seems likely that IL-1β–expressing cells were associated with CD4 + cells, suggesting that the CD4 + cells might be involved, within the wall of the aneurysm, in activating IL-1β production in the dispersed macrophages and that, in turn, these cells might be activating the CD4 + cells, possibly through the presentation of autoantigens."
reach
"For Th17 polarizing conditions, CD4 + T cells were stimulated with plate bound anti-CD3 antibody (0.5 mug/ml) and anti-CD28 antibody (1 mug/ml) (BD Pharmingen), anti-IFN-gamma (2 mug/ml), anti-IL-4 (2 mug/ml), IL-1beta (20 ng/ml), and IL-6 (20 ng/ml) (R&D systems) for 72 h. Fn14-Fc was purchased from R&D systems."
sparser
"Therefore, mPGES-1 stimulates an intercellular interaction between CD4 + T cells by upregulating the autocrine function of IL-1β in activated CD4 + T cells, which release IL-17 to facilitate axonal and myelin damage in EAE mice."
IL1B increases the amount of CD4.
| 3
IL1B increases the amount of CD4. 3 / 3
| 3
reach
"This down-regulation of CD4 expression by LPS, TNF-alpha, and IL-1 beta occurs at the level of transcription."
reach
"Conversely, neither LPS nor TNF-alpha and IL-1 beta were able to modulate surface CD4 expression on quiescent or phytohaemagglutinin (PHA)-activated lymphocytes."
reach
"However, after 24h, IL-1beta significantly increased surface expression of the positive CD4 + T-cell co-stimulatory molecule, ICOS-L 57."
FN1 affects PTK2B
| 7
FN1 phosphorylates PTK2B.
| 6
FN1 phosphorylates PTK2B. 4 / 4
| 4
sparser
"Our study on the role of Src in fibronectin-induced Pyk2 phosphorylation reveals another facet."
sparser
"In FAK-null fibroblasts, FN stimulation in the presence of the PP1 inhibitor of Src-family PTKs or after overexpression of p50 csk (a negative regulator of Src-family PTKs), resulted in dramatically lower levels of FN-stimulated Pyk2 tyrosine phosphorylation ( Sieg et al., 1998 )."
sparser
"Indeed, depletion of intracellular Ca2+ by using Ca2+ chelator BAPTA significantly reduces fibronectin-induced Pyk2 phosphorylation (data not shown), but whether this effect is Src-dependent or -independent remains to be determined."
sparser
"Thus, these results suggest that fibronectin-induced tyrosine phosphorylation of Pyk2 and FAK at Y402 and Y397 sites, respectively, are differentially regulated by Src."
FN1 phosphorylates PTK2B on Y402. 2 / 2
| 2
sparser
"All these data demonstrate that Src activity is required for fibronectin-induced phosphorylation of Pyk2 at Y402, but not for FAK phosphorylation at the corresponding Y397 site."
sparser
"In support of these findings, we observed that transient over-expression of wild-type Src (Src-WT) significantly promoted fibronectin-induced Pyk2-Y402 phosphorylation, but it had no effect on FAK-Y397 phosphorylation ( xref )."
FN1 binds PTK2B.
| 1
| 1
sparser
"The association of fibronectin and pyk2 has been reported previously ( xref )."
FN1 affects NR3C2
| 3 4
FN1 binds NR3C2.
| 3 3
| 3 3
reach
"Both fibrosarcoma cells and SV40-virus-transformed fibroblasts appeared to lack the Mr 140,000 Fn binding polypeptide."
sparser
"Identical polypeptides, corresponding to the alpha- and beta-subunits of the Fn-receptor complex, were bound to the Mr 105,000 chymotryptic Fn-fragment coupled to Sepharose."
reach
"Decrease of the Mr 140,000 fibronectin binding external protein in the collagen cultured melanoma cells was also associated with an inability to respond to the cell attachment activity of fibronectin, laminin, or vitronectin added to the collagen gels."
reach
"Direct overlay assay of electrophoretically separated polypeptides with 125I-Fn showed that in K562 cells there is a major Mr 190,000 Fn binding protein that is lost upon differentiation."
sparser
"Threonine-rich regions have been reported to be involved in fibronectin binding [ xref ], unidirectional transport of a mineralocorticoid receptor into the nucleus [ xref ], vanadate resistance [ xref ], and resistance to HIV by binding to a specific receptor [ xref ]."
sparser
"CCL18, fibronectin, and MR are prominently associated with the M2 phenotype [ xref , xref ]."
FN1 increases the amount of NR3C2.
| 1
FN1 increases the amount of modified NR3C2. 1 / 1
| 1
reach
"Both the MCR and c-jun translocate to the nucleus and initiate fibronectin transcription."
VEGFA affects PDGFRA
| 4 2
| 4
sparser
"VEGF-A binds to both PDGFRalpha and PDGFRbeta and induces tyrosine phosphorylation that, when inhibited, results in attenuation of VEGF-A-induced MSC migration and proliferation."
sparser
"It has been known that VEGF-A binds to both PDGFR-α and PDGFR-β and induces tyrosine phosphorylation ( xref )."
sparser
"VEGF-A binds to both PDGFRα and PDGFRβ and induces tyrosine phosphorylation that, when inhibited, results in attenuation of VEGF-A–induced MSC migration and proliferation."
sparser
"Having established by several methods that VEGF-A 165 –stimulated tyrosine phosphorylation of both PDGFRs, we went on to confirm VEGF-A 165 binding to cell surface PDGFRα and PDGFRβ using a cross-linking approach."
| 2
reach
"VEGF-A 165 bound to both PDGFRalpha and PDGFRbeta."
reach
"After VEGF-A 165 stimulation, PDGFR immunoprecipitation, and immunoblot analysis, a distinct association between VEGF-A and PDGFRalpha or PDGFRbeta was demonstrated (XREF_FIG)."
TNF affects IL6ST
| 1 5
TNF increases the amount of IL6ST.
| 4
TNF increases the amount of IL6ST. 4 / 4
| 4
reach
"Enhancement of IL-6 receptor beta chain (gp130) expression by IL-6, IL-1 and TNF in human epithelial cells."
reach
"On the other hand, both TNF-alpha and LPS upregulate gp130 surface expression and its release from vascular endothelial cells."
reach
"Moreover, we found that TNF-alpha and IL-6 secreted by activated Kupffer cells dramatically increased TNFR1 and GP130 expression in hepatocytes compared to untreated control cells."
reach
"In RASFs, the expression of gp130 subunit was significantly upregulated by TNFalpha while the IL12Rbeta2 receptor subunit was expressed neither constitutively nor induced by TNFalpha."
TNF binds IL6ST.
| 1 1
| 1 1
sparser
"There were no significant associations between cord blood IL-6, TNF and gp130 and polymorphisms of the encoding genes."
reach
"Additionally, challenging hepatocyte specific gp130 knockout animals with lipopolysaccharides (LPS) lead to an onset of acute liver injury with an increase of hepatocyte apoptosis associated with elevated tumor necrosis factor alpha (TNF-alpha) serum levels and reduced nuclear factor kappaB (NF-kappaB) activation in hepatocytes."
TNF affects CD44
| 1 4 1
| 1 4 1
sparser
"Recent clinical work using TNF-alpha inhibitors for the treatment of ovarian cancer makes the study of TNF-alpha interactions with CD44 crucial to determining treatment a success or a failure."
sparser
"A positive correlation was also obtained between TNF-α and CD44 expression, and co-upregulation of TNF-α and CD44 was associated with primary tumor stage, distant metastasis, and poor prognosis."
trips
"Tumor necrosis factor-inducible gene 6 interacts with CD44, which is involved in fate-change of hepatic stellate cells."
reach
"Tumor necrosis factor inducible gene 6 interacts with CD44, which is involved in fate-change of hepatic stellate cells."
sparser
"Ifn -γ which is also upregulated in B6 but notCcr2 −/− mice has also been shown to enhance TNF-α mediated binding of CD44 to HA xref ."
sparser
"Real-time PCR analysis showed that the treated A549 cells highly over expressed TNF-α, which was associated with a significant reduction of CD44 gene expression levels (p  <  0.05)."
TNF affects ANTXR1
| 6
| 6
sparser
"One study showed that TNF binds to TNF receptor 1 (TNFR1) and riboflavin kinase (RFK) to activate NOX1 leading to cell death [ xref ]."
sparser
"Upon tumor necrosis factor α (TNF-α) stimulation, MOAP-1 associates with the TNF receptor 1, subsequently, RASSF1A was recruited to this complex and then participates in the death receptor-dependent apoptosis[ xref ]."
sparser
"It was previously shown xref that freshly isolated murine peritoneal macrophages underwent apoptosis upon HSV-2 infection, which was associated with the up-regulation of Fas and TNF-receptor 1 (TNF-R1) pathways."
sparser
"Upon TNF stimulation, TNF receptor 1 binds TRADD, which in turn recruits TRAF2, cIAP1 and cIAP2, and subsequently the linear ubiquitin assembly complex (LUBAC) [ xref ]."
sparser
"This is surprising as another study showed OUA to block the activation of the TNF/NF-κB pathway by interfering with the interaction between TNF receptor 1 and TRADD in HeLa cell cultures [ xref ]."
sparser
"TNF binds to the extracellular domains of TNF receptor 1 (TNFR1) and collects TNFR1-associated death domain protein (TRADD) to the cytoplasm death domain of the TNFR1."
TNF affects AGTR1
2 | 4
TNF binds AGTR1.
| 4
| 4
sparser
"Moreover, TNF- α –induced hypertension (97±2 to 112±2 mm Hg; P <0.05) in pregnant rats was associated with AT1-AA production (TNF- α rats 9.2±2.3 U versus NP rats 1.0±0.8 U; P <0.05)."
sparser
"We have recently reported that the hypertension in response to placental ischemia is associated with increases in plasma levels of sFlt-1, sEng, TNF-α, and AT1-AA. xref , xref We also demonstrated that chronic infusion of TNF-α or AT1-AA, at rates to mimic the increase of these factors observed in placental ischemic pregnant rats, significantly contributes to elevated blood pressures. xref – xref Moreover, we found that chronic infusion of TNF-α in pregnant rats stimulated the production of AT1-AA and the blood pressure response to TNF-α or AT1-AA were attenuated by treatment with an angiotensin type 1 receptor antagonist. xref , xref Although these findings suggest an important interaction between TNF-α and AT1-AA in the blood pressure response to placental ischemia, it is unknown whether these factors interact in regulating sFlt-1 and sEng production."
sparser
"Moreover, TNF-alpha-induced hypertension (97+/-2 to 112+/-2 mm Hg; P<0.05) in pregnant rats was associated with AT1-AA production (TNF-alpha rats 9.2+/-2.3 U versus NP rats 1.0+/-0.8 U; P<0.05)."
sparser
"The aim of the present study was to examine plasma AT1-AA titer in severe preeclampsia and determine whether change in AT1-AA level was associated with TNF-α and VEGF."
TNF increases the amount of AGTR1.
2 |
Transcriptionally active TNF increases the amount of AGTR1. 2 / 2
2 |
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
LRP1 affects FN1
| 4 2
| 4 2
reach
"As both Hsp90 and FN interact with LRP1, and the Hs578T cell line expresses LRP1, we hypothesised that this receptor may be involved in Hsp90 mediated FN turnover."
sparser
"Purified LRP bound directly to immobilized Fn, and this interaction was inhibited by RAP."
reach
"Thus, considering our previous study established a role for Hsp90 in FN matrix dynamics, and that both FN and Hsp90 interact with LRP1, we hypothesised that the LRP1 receptor was involved in the turnover of FN in response to Hsp90 inhibition by NOV.."
sparser
"As both Hsp90 and FN interact with LRP1, and the Hs578T cell line expresses LRP1, we hypothesised that this receptor may be involved in Hsp90-mediated FN turnover."
sparser
"Thus, considering our previous study established a role for Hsp90 in FN matrix dynamics, and that both FN and Hsp90 interact with LRP1, we hypothesised that the LRP1 receptor was involved in the turnover of FN in response to Hsp90 inhibition by NOV."
sparser
"We showed that Hsp90 forms a common complex with FN and LRP1 on the surface of MEF-1 and Hs578T cells, which surprisingly was not perturbed by NOV."
ITGAM affects TLR4
| 1 5
ITGAM increases the amount of TLR4.
| 3
ITGAM increases the amount of TLR4. 3 / 3
| 3
reach
"To further test if TLR4 expressing skin-resident immune cells are involved in the hBD2 induced itch, we conditionally ablated TLR4 expression in the myeloid cell lineage by generating the LysM cre; Tlr4 f/f mice as we found that TLR4 was primarily expressed by CD11b + / CD11c - dermal macrophages besides a small percentage of dendritic cells and eosinophils (see XREF_SUPPLEMENTARY in this article 's Online Repository at www.jacionline.org)."
reach
"As shown in XREF_FIG, there was no difference in the percentage of lung CD11b + DCs that expressed TLR4 or TLR5, or the mean fluorescence intensity (MFI) of TLR4 and TLR5 expression by lung CD11b + DCs, in DNA-PKcs fl/fl as compared to DNA-PKcs fl/fl; Cd11c-Cre mice."
reach
"Thus, modified expression of TLR4 or TLR5 by lung CD11b + DCs does not appear to mediate impaired T cell priming to HDM in DNA-PKcs fl/fl; Cd11c-Cre mice."
ITGAM binds TLR4.
| 1 2
| 1 2
sparser
"At the moment, we do not know how NE and CD11b or TLR4 interact to promote the up-regulation of phagoctyosis, but our results of co-localization support the hypothesis that Leishmania induces the rearrangement of cell surface components in macrophages, bringing CR3 and NE to a common signaling platform."
reach
"Binding of dCyaA to CD11b and CD18 integrin may favor a TLR4 and CD11b interaction, or dCyaA could directly interact with TLR4 via its acyl chains."
reach
"The interaction between LPS, CD11b, and TLR4 is still insufficiently understood."
INHBA affects ACVR1
1 1 4 |
INHBA binds ACVR1.
1 1 2 |
1 1 2 |
hprd
No evidence text available
biogrid
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
INHBA activates ACVR1.
2 |
INHBA activates ACVR1. 2 / 2
2 |
omnipath
No evidence text available
omnipath
No evidence text available
IL10 affects IFNGR1
| 6
IL10 inhibits IFNGR1. 6 / 6
| 6
sparser
"Moreover, IL-10 may directly inhibit proliferation and production of IL-2, IFN-γ, IL-4, IL-5, and TNF-α by CD4 + T cells, thus it regulates both Th1 and Th2 immune responses ( xref )."
sparser
"Inhibition of both IL-12 and IFN-γ by IL-10 promotes development of Th2 type cytokine pattern."
sparser
"Moreover, IL-10 negatively inhibited the pro-inflammatory cytokines IFN-γ, TNF-α, IL-12β, and IL-2 that play roles in adaptive immune response [ xref ]."
sparser
"Traditionally, the cytokines IL-2 and IFN-γ are inhibited by IL-10 [ xref ]."
sparser
"To assess its function, rdIL-10 was produced in human embryonic kidney 293 cells and its bioactivity was demonstrated through IL-10-induced inhibition of proinflammatory cytokine mRNA expression IFN-γ, TNF-α, and IL-2 of Con A-stimulated PBMC."
sparser
"IL-10 inhibits TNF-α, IL-1β, or IFN-γ induced surface ICAM-1 protein expression in astrocytes, but does not have any effect on mRNA steady-state levels, suggesting translational or post-translational regulation of ICAM-1 ()."
FN1 affects FGFR1
| 6
FN1 binds FGFR1.
| 5
| 5
sparser
"A relevant finding in understanding its tumorigenesis was the identification of fibronectin 1 ( FN1 ) and fibroblast growth factor receptor‐1 ( FGFR1 ) translocations which led to an FN1FGFR1 fusion protein in 60% of studied PMTs by RNA sequencing or FGFR‐specific fluorescence in situ hybridization (FISH). xref Additional studies have confirmed this finding in a larger group of PMTs. xref In addition to the description of the FN1FGFR1 translocation, it has been recently reported that 6% of PMTs had an FN1 ‐fibroblast growth factor 1 ( FGF1 ) translocation. xref However, these findings still suggest the existence of the tumorigenic drivers behind the fusion‐negative cases, and the mutational landscape and genetic signatures of PMTs are yet to be elucidated."
sparser
"In addition, several gene fusions including the FN1FGFR1 fusion were identified (Table xref )."
sparser
"Patients with FN1-FGFR1 gene fusion overexpress FGF-23 and present with progressive manifestations of oncologic osteomalacia."
sparser
"The latter is overexpressed secondary to an FN1-FGFR1 gene fusion, which is found in nearly 50% of PMTs suggesting there are likely other tumorigenic mechanisms in these lesions xref ."
sparser
"Surgical excision was performed by the orthopedic surgeon and molecular analysis of the surgical specimen at a tertiary care center specialized for soft tissue oncology was positive for an FN1-FGFR1 fusion gene."
FN1 phosphorylates FGFR1.
| 1
FN1 phosphorylates FGFR1. 1 / 1
| 1
sparser
"Whereas FGF ligand-induced phosphorylation of FGFR1 preferentially activates ERK, FN-induced phosphorylation of FGFR1 preferentially activates AKT, indicating differential downstream signaling of FGFR1 in response to alternate stimuli."
CXCR4 affects CXCL2
| 2 4
| 2 4
sparser
"Materials and Methods: In silico approaches including homology modeling, molecular docking, molecular dynamic simulations and binding free energy calculations were employed on the study of the binding of CXCL2 to CXCR4, and in vitro surface plasmon resonance measurement, peptide/cell adhesion, transmigration assays were applied for the validations of the in silico results."
| PMC
reach
"Matrix metalloproteinases promote leukemic cell invasion and transendothelial migration and are activated by integrin signaling, CXCL2 and CXCR4 interaction and ERK pathway activation."
reach
"The invasive behavior of cancer cells might indirectly depend on locally released CXCL2 that, via an autocrine mechanism, binds to CXCR4 impairing chemotaxis towards CXCL12 producing target organs and metastatic spread [XREF_BIBR]."
sparser
"In tumor cells expressing a high level of CXCR4, the disruption of the CXCR4-CXCL2 interaction induces a diminution of the interactions of cancer cells with the bone marrow environment."
reach
"Subsequent studies have demonstrated that the CXCR4 and CXCL2 interaction plays a central role in mediating neutrophil release without the requirement of other signalling pathways, such as Toll like receptor (TLR) 4, myeloid differentiation primary response gene (MyD) 88 or TIR domain containing adaptor inducing interferon-beta (TRIF) 45."
reach
"showed that the CXCL2 and CXCR4 interaction binds breast cancer cells to microenvironment of the bone marrow and that CXCR4 inhibition prevents metastatic progression."
TNF affects NOTCH1
| 4 1
| 4 1
sparser
"By linking Notch and TNFα it was shown that (1) Notch-1 mucosal expression differs in inflamed and non-inflamed mucosa and increases in response to anti-TNFα treatment; (2) Notch-1 function is regulated by TNFα inhibitors; (3) Notch-1 binds to TNFα; and (4) Notch-1 inhibition prevents anti-TNFα-induced T cell cycle arrest but not apoptosis."
sparser
"In parallel with our findings, Daniel et al. [43] reported that TNF-α inhibited Mfn2 expression in cells and that Notch1 could directly bind to TNF-α [44] , supporting positive regulation of Mfn2 by Notch1 via TNF-α inhibition."
sparser
"TNF promoted p52/RELB binding to NICD, which enhanced binding at the RBPjκ site within the Hes1 promoter."
reach
"By linking Notch and TNFalpha it was shown that (1) Notch-1 mucosal expression differs in inflamed and non inflamed mucosa and increases in response to anti-TNFalpha treatment; (2) Notch-1 function is regulated by TNFalpha inhibitors; (3) Notch-1 binds to TNFalpha; and (4) Notch-1 inhibition prevents anti-TNFalpha-induced T cell cycle arrest but not apoptosis."
sparser
"The upregulation of constitutive nuclear factor NF-κB, as well as CD30, CD40, tumor necrosis factor (TNF)-α, and Notch1 interactions contributes to these processes ( xref )."
TNF affects NGFR
| 5
| 5
sparser
"The only exception is NGFR, which binds non‐TNF‐like ligands and signals as a dimer ( Locksley et al. , 2001 )."
sparser
"4-lBB and OX-40 are members of tumor necrosis factor (TNF)-nerve growth factor receptor subfamily that bind TNF receptor-associated factors and activate nuclear factor lCB. ~o!."
sparser
"This is an intriguing possibility in light of the apparent interaction between TNF and p75NTR, since TACE and MMPs are involved in proteolytic cleavage-related modulation of signaling in both systems [ xref , xref , xref ]."
sparser
"Among the envelope glycoproteins, gD is a potential candidate because it has been shown to interact with a member of the tumor necrosis factornerve growth factor receptor family [53,54] ."
sparser
"Thus, NgR1 forms a complex with Leucine rich repeat and Ig domain containing 1 (LINGO-1) and tumor necrosis factor family member (TROY) and/or low affinity nerve growth factor receptor (p75)."
TLR4 affects SIRPA
| 1 4
| 1 4
reach
"Collectively, these results demonstrate that SIRPA inhibits TLR4 expression and directly interacts with TLR4."
reach
"31 In our study, we found that the expression of TLR4 was downregulated by SIRPA after pressure overload and that SIRPA can directly interact with TLR4."
sparser
"In addition, CD47 is the ligand of SIRPA, and CD47/SIRPA interaction is the major determinant of escape from phagocyte-mediated cell clearance. xref In our study, we demonstrated that SIRPA physically interacted with TLR4; therefore, SIRPA may behave similarly to CD14, xref which promotes the endosome/lysosome-mediated degradation of TLR4."
reach
"43 In our study, we demonstrated that SIRPA physically interacted with TLR4; therefore, SIRPA may behave similarly to CD14, 42 which promotes the endosome and lysosome mediated degradation of TLR4."
reach
"We then performed coimmunostaining and coimmunoprecipitation experiments to validate whether SIRPA physically interacts with TLR4."
TIMP1 affects NR3C2
| 5
TIMP1 binds NR3C2.
| 3
| 3
sparser
"We found that the N-terminal 22 000 Mr fragment is capable of binding to TIMP in a similar manner to the whole molecule resulting in the formation of a TIMP- 22 000 Mr fragment complex."
sparser
"The data additionally shows that the C-terminal 27000 Mr domain will not bind to TIMP on its own suggesting that the TIMP-binding ability of collagenase resides mainly or entirely in the N-terminal domain."
sparser
"Intact fibroblasts cultured in the presence of tunicamycin synthesized an Mr 20 000 form of tissue inhibitor of metalloproteinases, detectable intracellularly and extracellularly."
TIMP1 inhibits NR3C2.
| 2
TIMP1 inhibits NR3C2. 2 / 2
| 2
sparser
"In contrast to our own initial data they also reported inhibition of both whole molecule collagenase and 22 000 Mr fragment by TIMP at a 1:1 molar stoichiometry."
sparser
"Nagase et al. [8] have also described the inhibition of the 22 000 Mr fragment by TIMP; however they report that inhibition occurs at a 1:1 molar ratio of TIMP to 22000 Mr fragment and they do not mention any attenuation of inhibition compared to that of the whole molecule."
TIMP1 affects CD44
| 4 1
| 4 1
sparser
"Importantly, we uncover that TIMP1 suppresses osteoblast growth and differentiation by targeting the AKT pathway, and this is associated with TIMP1-mediated induction of PTEN via its binding to the cell surface receptor CD44."
sparser
"Other studies have also reported that TIMP-1 can bind to CD63 or the pro-MMP9/CD44 complex, thereby activating survival pathways in some cells [ xref , xref ]."
reach
"Previous studies have demonstrated that TIMP-1 binds a proMMP9 and CD44 complex that facilitates erythroid cell survival and is localized to the cell surface [XREF_BIBR]."
sparser
"Interestingly, CD44 also correlates with increased aggressiveness and resistance to radiation therapy and chemotherapeutics (reviewed in xref ) and TIMP-1 binding of the proMMP-9/CD44 complex has been shown to mediate cell survival through Akt activation xref ."
sparser
"Therefore, our results indicate that the anti-apoptotic signalling of TIMP-1 depends on the formation of a ternary complex between TIMP-1, proMMP-9 and CD44 at the UT-7 erythroid cell surface."
THBS1 affects ITGB1
1 4 |
THBS1 binds ITGB1.
1 2 |
1 2 |
hprd
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
THBS1 activates ITGB1.
2 |
THBS1 activates ITGB1. 2 / 2
2 |
omnipath
No evidence text available
omnipath
No evidence text available
PTGER3 affects IL1B
| 5
| 5
sparser
"Higher levels of GCF IL-1beta and PGE(2) were significantly associated with clinical signs of periodontal disease and independently related to patient-based anthropomorphic measures, behaviours and exposures in community-dwelling adults."
sparser
"Increased levels of IL-1beta and PGE(2) were associated with body mass index >or=30 kg/m(2)."
sparser
"IL-6 did increase IL-1beta-induced PGE(2) formation in unstimulated cells but not in cells stimulated with arachidonic acid (AA; 10(-5) M), suggesting that IL-6 effects were mediated at the level of AA release."
sparser
"The close parallel between the kinetics of COX-2 expression and PGE synthesis indicated that IL-1β-induced PGE formation in TSMCs is mediated through the enhanced expression of COX-2."
sparser
"Clinically, high-gingival crevicular fluid levels of PGE-2, IL-1β, or IL-6 have been associated with their elevated levels in amniotic fluid.[ xref ] The inflammatory response appears to be the privileged pathway of the pathogenic periodontal disease influence on pregnancy, as suggested for other major systemic diseases, including cardiovascular diseases or diabetes.[ xref ]"
ITGB1 affects ITGA1
1 2 2 |
2 2 |
hprd
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
hprd
No evidence text available
ITGA1 bound to ITGB1 binds ITGB1. 1 / 1
1 |
signor
"Integrins are one of the major families of cell adhesion receptors (Humphries, 2000; Hynes, 2002). All integrins are non-covalently-linked, heterodimeric molecules containing an α and a β subunit. Both subunits are type I transmembrane proteins, containing large extracellular domains and mostly short cytoplasmic domains (Springer and Wang, 2004; Arnaout et al., 2005). Mammalian genomes contain 18 α subunit and 8 β subunit genes, and to date 24 different α,β combinations have been identified at the protein level. Although some subunits only appear in a single heterodimer, twelve integrins contain the β1 subunit, and five contain αV."
IL6ST affects IL10
| 3 2
| 3 2
sparser
"This interaction between IL6ST rs10471960 and IL10 rs3024493 SNPs was not detected in the Canadian population ( P =0.65) or when the populations were combined ( P =0.020)."
sparser
"In the epistasis study, a suggestive interaction between IL6ST rs10471960 and IL10 rs3024493 SNPs was observed in the population that originated in the northern Finland ( P =0.0003)."
reach
"87 However, Gu et al 82 evaluated the associations between IL-4, IL-6, and IL-10 and the IL receptor genes, IL-4R, IL-6R, and IL-10R, and CMM susceptibility; they reported that 4 SNPs in the IL-6R gene were associated with an increased risk of CMM, but none of the other genes exhibited any other associations."
reach
"To our knowledge, interactions between IL6ST and IL10 have not been reported previously."
sparser
"To our knowledge, interactions between IL6ST and IL10 have not been reported previously."
IL1B affects TRPC3
| 1 4
IL1B increases the amount of TRPC3.
| 4
IL1B increases the amount of TRPC3. 4 / 4
| 4
reach
"Interleukin-1beta specifically upregulated TRPC3 protein expression in myometrial cells without influencing TRPC3 mRNA and had no effect of TRPC4 mRNA or protein [XREF_BIBR]."
reach
"IL-1 beta did not alter TrpC1, 3, 4, 6, or 7 mRNA expression; but IL-1 beta exclusively up-regulated TrpC3 protein expression (P < or = 0.05)."
reach
"Specifically, IL1B modulates protein expression of TRPC3 (a putative calcium channel) and SR Ca 2+ -ATPases, initiates spontaneous [Ca 2+] i oscillations and augments calcium influx pathways and a store operated current [XREF_BIBR, XREF_BIBR]."
reach
"The induction of TRPC3 protein expression by IL1B may in part explain the increase in TRPC3 expression observed in uterine muscle at labour onset and provides a plausible mechanism by which cytokines could induce premature labour."
IL1B binds TRPC3.
| 1
TNF binds TRPC3 and IL1B. 1 / 1
| 1
sparser
"An increased TRPC3 expression was significantly associated with increased expression IL-1β or TNF-α."
IL1B affects ANTXR1
| 5
| 5
sparser
"IL-1α and IL-1β bind to the IL-1 receptor 1 (IL-1R1) [ xref , xref ]."
sparser
"IL-1α and IL-1β both bind to the IL-1 receptor 1 (IL-1RI), which is present on almost all cell types, including structural cells such as airway epithelial cells [ xref , xref ]."
sparser
"Both IL-1α and IL-1β bind to IL-1 receptor 1 (IL-1R1)."
sparser
"IL-1 signaling is activated when either of the agonistic IL-1 ligands i.e. IL-1α or IL-1β binds to the IL-1 receptor 1 (IL-1R1) which then forms a complex with the IL-1 receptor accessory protein (IL-1RAcP)."
sparser
"Both IL-1α and IL-1β interact with the IL-1 receptor 1 (IL-1R1) and recruit the IL-1 receptor accessory protein (IL-1R3, formerly IL-1RAcP) to induce a downstream signal via several inflammatory kinases, such as Myd88, ERK, JNK and NFκB, leading to transcription of inflammatory, catabolic genes [ xref - xref ]."
IL10 affects F3
| 5
F3 binds IL10. 5 / 5
| 5
sparser
"TF IL-10 detection was not associated with hyaline membrane disease, antenatal steroids or influenced by TF sample volume."
sparser
"In the current study, we found that a deficiency of TF in myeloid cells was associated with enhanced IL-10 production, a reduction in the loss of ΔΨm, reduced apoptosis and increased M. tb growth in macrophages."
sparser
"However, the complex physiological changes that occur during pregnancy make it difficult to confirm whether TF expression is associated with IL-10 in vivo."
sparser
"For example, studies in mouse model systems have shown that deficiency of IL-10 is associated with tissue factor (TF) activities together with markers of systemic coagulation and vascular thrombosis xref ."
sparser
"0.1 and 10 U/ml IL-10 was associated with a concentration-dependent decrease in TF mRNA (Fig. 4)."
CCL4 affects PTK2B
| 1 1 3
CCL4 phosphorylates PTK2B. 5 / 5
| 1 1 3
sparser
"Furthermore, CCL5 and CCL4 can induce the phosphorylation of Pyk2 in the human T cell line, DU6 [80] and Pyk2 activation by CCL4 has been shown to be dependent on CCR5 activation [81] ."
reach
"RANTES and SDF-1alpha, but not MIP-1beta, rapidly induced Pyk2 phosphorylation in HL60 cells."
trips
"Pyk2 phosphorylation was also induced by macrophage inflammatory protein-1beta (MIP-1beta) and stromal cell-derived factor-1alpha, chemokine ligands for CCR5 and CXCR4."
reach
"Furthermore, CCL5 and CCL4 can induce the phosphorylation of Pyk2 in the human T cell line, DU6 [80] and Pyk2 activation by CCL4 has been shown to be dependent on CCR5 activation [81]."
reach
"Indeed, MIP-1beta, as well as RANTES and SDF-1alpha, induced Pyk2 phosphorylation in DU6 cells with kinetics comparable to those in HL60 cells."
C3 affects LRP1
1 4 |
C3 binds LRP1.
1 2 |
C3 binds LRP1. 3 / 3
1 2 |
omnipath
No evidence text available
omnipath
No evidence text available
hprd
No evidence text available
C3 activates LRP1.
2 |
C3 activates LRP1. 2 / 2
2 |
omnipath
No evidence text available
omnipath
No evidence text available
VLDLR affects SEL1L
| 2 2
| 2 2
reach
"We also report that the ERAD adaptor protein SEL1L interact with VLDLR and by CRISPR and Cas9 functional knock-out, provide evidence for a role for SEL1L in the intracellular degradation of VLDLR."
sparser
"We also report that the ERAD adaptor protein SEL1L interact with VLDLR and by CRISPR/Cas9 functional knock-out, provide evidence for a role for SEL1L in the intracellular degradation of VLDLR."
reach
"It would be worthwhile to explore the possibility of natural interactions between VLDLR and SEL1L in different cell types, since SEL1L is emerging to have diverse roles in ER homeostasis and lipid metabolism XREF_BIBR, XREF_BIBR."
sparser
"It would be worthwhile to explore the possibility of natural interactions between VLDLR and SEL1L in different cell types, since SEL1L is emerging to have diverse roles in ER homeostasis and lipid metabolism xref , xref ."
VEGFA affects RET
| 2 2
VEGFA phosphorylates RET.
| 1 2
VEGFA phosphorylates RET. 3 / 3
| 1 2
reach
"Earlier studies have shown that VEGFA164 signaling interacts with that of GDNF, and that VEGFA can phosphorylate RET; moreover, GDNF is up-regulated by the addition of human VEGFA165, and KDR and RET are co-immunoprecipitated."
reach
"VEGF-A stimulates proliferation and branching of ureteric bud via phosphorylation of the Ret receptor and upregulation of its major ligand, glial derived neurotrophic factor (GDNF) [XREF_BIBR, XREF_BIBR]."
sparser
"Earlier studies have shown that VEGFA164 signaling interacts with that of GDNF, and that VEGFA can phosphorylate RET ( xref ); moreover, GDNF is up-regulated by the addition of human VEGFA165, and KDR and RET are co-immunoprecipitated."
VEGFA binds RET.
| 1
| 1
sparser
"These findings provide evidence for a novel cooperative interaction between VEGFR2 and RET that mediates VEGF-A functions in ureteric bud cells."
VEGFA affects PKD1
| 4
VEGFA activates PKD1.
| 3
VEGFA activates PKD1. 3 / 3
| 3
sparser
"PKD1 that is activated in endothelial cells by vesicular endothelial growth factor (VEGF) phosphorylates HDAC5 at Ser259/498 and induces cell proliferation and angiogenesis ( xref )."
sparser
"VEGF-A activated PKD1 by inducing its phosphorylation of Ser 744/748 in the activation loop, most likely by protein kinase Cα [ xref ] ( xref )."
sparser
"It appears, therefore, that integrin αvβ3 underwent constitutive Rab5 and Rab4-dependent recycling through early endosomes, and that the activation of PKD1 by VEGF-A inhibited the endocytosis of αvβ3 via an unknown mechanism."
VEGFA phosphorylates PKD1.
| 1
VEGFA phosphorylates PKD1. 1 / 1
| 1
sparser
"Although both Ang-1 and VEGF induced significant PKD1 phosphorylation, the relative rise in PKD1 phosphorylation in response to VEGF is relatively stronger (≈29-fold) compared with that elicited by Ang-1 (≈5-fold; online-only xref )."
TNF affects IFNGR1
3 | 1
TNF increases the amount of IFNGR1.
3 |
Transcriptionally active TNF increases the amount of IFNGR1. 3 / 3
3 |
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
TNF binds IFNGR1.
| 1
| 1
reach
"Candidate gene studies indicated associations between polymorphic alleles of SLC11A1 (formerly called NRAMP1), IL4, IFNGR1, and TNFA (encoding TNF-alpha) and development of visceral leishmaniasis, asymptomatic infection, or PKDL [XREF_BIBR - XREF_BIBR]."
THBS1 affects CD44
| 3 1
| 3 1
sparser
"We believe that TSP-1 bridges cell surface receptors and facilitates (i.e., accelerates) formation of the DBP binding site complex, but there is no evidence that TSP-1 directly interacts with either CD44 or annexin A2, two molecules that we have previously shown are part of the DBP binding site ( xref )."
sparser
"TSP-1 interacts with CD44 ligands or HA binding proteins to influence CD44 expression [ xref ]."
sparser
"These studies indicate a clear connection between the two molecules, and since both CD44 and TSP-1 bind multiple ligands there is a distinct possibility that one or more of these ligands could bridge TSP-1 with CD44, thus, facilitating the DBP binding site complex."
reach
"However, there are indirect associations between CD44 and TSP-1 that may be relevant to understanding how TSP-1 assists DBP in enhancing chemotaxis to C5a."
TGFBR3 affects INHBA
1 3 |
1 3 |
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
hprd
No evidence text available
SPP1 affects F3
| 4
SPP1 binds F3. 4 / 4
| 4
sparser
"The elevated levels of OPN and TF were associated with signal activation of nuclear factor κB (NFκB) and extracellular signal-regulated kinases (ERK)."
sparser
"Expression of OPN and TF were also significantly associated with both OS and TRR."
sparser
"OPN and TF are positively associated with malignancy, especially vascular thrombosis."
sparser
"LXR ligands also exhibit a similar repression of tissue factor (TF) and osteopontin, both of which are associated with the development of atherosclerosis."
SLC2A1 affects IGF1R
| 2 2
| 2 2
sparser
"Expression of IGF-1R and GLUT1 were associated with poor overall survival in multivariate analysis, and therefore appear to be possible interesting biomarkers of radiation resistance."
sparser
"Expression of IGF-1R and GLUT1 could be associated with poor prognosis, and therefore appear to be possible interesting biomarkers of radiation resistance."
reach
"Regulated translocation of GluT1 to the cell membrane by IGF-IR involves an intricate repertoire of protein protein interactions amenable to drug modulation, particularly by interfering with IGF-IR and GluT1 interactions."
reach
"Analysis of underlying mechanisms indicated that IGF-IR interacts with glucose transporter 1 (GLUT1), the main facilitative glucose transporter in astrocytes, through a mechanism involving interactions with the scaffolding protein GIPC and the multicargo transporter LRP1 to retain GLUT1 inside the cell."
SIRPA affects PRLR
| 4
| 4
sparser
"The interaction between the PRLr and SIRPα in MDA-MB-231 was comparable with that seen in the T47D cells ( xref )."
sparser
"To that end, the interaction of SIRPα with the PRLr, β 1 integrin, and Jak2 was tested ( xref and xref )."
sparser
"SIRPα interacts with the PRLr, β 1 integrin, and Jak2 in breast cancer cells."
sparser
"Our findings have shown that PRLr, β 1 integrin, and SIRPα interact in both estrogen receptor–positive (ER + ) and ER − breast cancer cell lines, whereas SIRPα expression/function is associated with an ECM context-dependent modulation of PRLr signaling."
SEL1L affects DERL1
2 | 1 1
2 | 1 1
biogrid
No evidence text available
biogrid
No evidence text available
sparser
"SEL1L associates with Derlin-1, -2, p97, and HRD1, as well as with additional proteins that remain to be identified, some or all of which may also play a role in dislocation."
reach
"The US11 ERAD pathway is the better characterized and helped identify the Derlin-1 and SEL1L complex, emphasizing the utility of these viral genes in defining ERAD components."
SCARB1 affects OLR1
| 4
| 4
sparser
"SR-BI binds HDL as well as OxLDL, and is expressed mainly in adrenal gland and adipose tissue. [44] SR-BI was shown to functions as an HDL-receptor which transfers cholesterol from HDL to steroidogenic cells by a so called “selective uptake” pathway. [44] When adrenal cells are incubated with HDL, cholesterol is transferred to the cells from the HDL although the HDL proteins do not accumulate in the cells."
sparser
"The best competitors for OxLDL binding to SR-BI were oxidized lipoproteins, whereas native or acetylated lipoproteins only competed for a small fraction of OxLDL binding."
sparser
"OxHDL is a potent inhibitor of oxLDL binding to SR-BI."
sparser
"Increased SR-BI binding may result from the oxidation of HDL’s proteins and lipids, as has been observed for oxLDL which binds SR-BI with a higher affinity than native HDL [ xref ]."
OLR1 affects TRPA1
| 4
OLR1 activates TRPA1. 4 / 4
| 4
sparser
"In this study, we found that oxLDL activated macrophage TRPA1 channels; however, we cannot verify the potential contribution of the oxidative products to oxLDL-induced activation of TRPA1 channels observed in this study."
sparser
"OxLDL activates TRPA1 channels in macrophages."
sparser
"Blocking TRPA1 activation by HC030031 abrogated oxLDL- or AITC-induced Ca 2+ influx in TRPA1-re-expressed HEK293 cells (Fig. xref C-D)."
sparser
"To further study whether oxLDL could directly activate TRPA1, we used a gain-of-function strategy to measure Ca 2+ permeability of TRPA1 channels by re-expressing full-length TRPA1 in HEK293 cells, which lack TRP channels."
M6PR affects CTSD
| 4
| 3
sparser
"In the latter study, the authors demonstrated an interaction between M6PR and pCathD."
sparser
"Cathepsin D binds to the monocyte/macrophage mannose-6-phosphate receptor [44,45,69], which determines the sorting of cathepsin D between intracellular and plasma membrane components."
sparser
"Both treatments resulted in suppression of cellular proliferation and the induction of a cell death with no detectable caspase-3 activation or DNA fragmentation, however, it was associated with increased accumulation of cathepsin D, cellular vaculolization, expression of the mannose-6-phosphate receptor, and the autophagy marker LC3-II, all of which are believed to be associated with autophagy."
SORT1 binds CTSD and M6PR. 1 / 1
| 1
sparser
"Cathepsin H has previously been demonstrated to interact with sortilin, while cathepsin D interacts with both sortilin and the M6PR."
LGALS3BP affects ITGB1
1 1 2 |
1 1 2 |
omnipath
No evidence text available
omnipath
No evidence text available
biogrid
No evidence text available
hprd
No evidence text available
KCNH2 affects CALR
1 | 2 1
1 | 2 1
sparser
"Furthermore, the interaction between mutant hERG proteins and chaperone proteins, Calnexin and Calreticulin, play crucial roles in these processes."
sparser
"As shown in xref , treatment with lactacystin or ALLN but not leupeptin (a lysosome inhibitor) results in an increase in the levels of core-glycosylated, immature form of hERG, Calnexin and Calreticulin."
reach
"To assess the physical interaction between hERG and Calnexin and Calreticulin, immunoprecipitation was done with anti-Calnexin or anti-Calreticulin antibody, followed by Western blot analysis with anti-hERG antibody."
biogrid
No evidence text available
ITGAV affects CALR
1 3 |
1 3 |
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
hprd
No evidence text available
IL1B affects TRPV4
4 |
Transcriptionally active IL1B increases the amount of TRPV4. 4 / 4
4 |
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
IL1B affects PDGFRA
| 2 2
IL1B phosphorylates PDGFRA.
| 2
IL1B phosphorylates PDGFRA. 2 / 2
| 2
sparser
"IL-1beta-stimulated c-Src, PDGFR, and Akt phosphorylation and proMMP-9 expression were attenuated by the inhibitors of c-Src (PP1), PDGFR (AG1296), and PI3K (LY294002), respectively, or transfection with dominant negative plasmid of c-Src or short hairpin RNAs of PDGFR and Akt."
sparser
"Src, PDGFR, and PI3K/Akt mediated the effects of IL-1beta because pretreatment with PP1, AG1296, and wortmannin also abrogated IL-1beta-stimulated Src, PDGFR, and Akt phosphorylation, respectively."
IL1B increases the amount of PDGFRA.
| 2
IL1B increases the amount of PDGFRA. 2 / 2
| 2
reach
"Collectively, these findings support the notion that C/EBPdelta mediated increase in PDGFR-alpha expression by IL-1beta is involved in smooth muscle cell hyperplasia by partial deletion of XBP1."
reach
"Active CREB prevents activation of PDGFRalpha promoter-luciferase reporter activity by CCAAT and enhancer binding protein-delta (C/EBPdelta), shown to mediate IL-1beta stimulation of PDGFRalpha expression."
IL1B affects HRH1
| 4
IL1B binds HRH1.
| 2
| 2
sparser
"The same signalling pathway is involved in the interactions between histamine, interleukin-1beta, and interleukin-6, where NGF secretion is amplified."
sparser
"In this review, the biochemical mechanisms of histamine-stimulated NGF synthesis and secretion, and interactions between histamine, interleukin-1beta, and interleukin-6 are discussed."
IL1B activates HRH1.
| 2
IL1B activates HRH1. 2 / 2
| 2
sparser
"Moreover, an experimental study of central administration of interleukin-1β in rats demonstrated that interleukin-1β may stimulate synthesis and release of hypothalamic histamine at presynaptic terminals by activation of histidine decarboxylase (a histamine-synthesizing enzyme) and thus facilitate the degradation of extracellular histamine by the activation of histamine-N-methyltransferase (a degrading enzyme). xref These results indicate that interleukin-1β activates neural histamine turnover in the hypothalamus."
sparser
"Moreover, interleukin-1beta may activate the turnover of hypothalamic neural histamine."
IL1B affects CNR1
| 4
IL1B increases the amount of CNR1. 4 / 4
| 4
reach
"Next, we examined a possibility that the male specific upregulation of CB1 expression by IL-1beta can be mediated by the differential expression of AR in TG between the two sexes."
reach
"Interleukin-1 beta (IL-1beta), a proinflammatory cytokine, upregulated CB1 mRNA expression in TG of male rats."
reach
"In this study, however, we demonstrated that the IL-1beta induction of CB1 expression was prevented only in the presence of flutamide, but not ICI 182,780."
reach
"In this study, we confirmed that IL-1beta application reliably and significantly increases CB1 expression in TG primary cultures prepared from intact male rats (XREF_FIG)."
IL1B affects ABCA1
4 |
Transcriptionally active IL1B decreases the amount of ABCA1. 4 / 4
4 |
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
IGF2R affects CTSD
1 | 2 1
1 | 2 1
hprd
No evidence text available
reach
"As shown in XREF_SUPPLEMENTARY, 86% of the Ctsk activity and 16% of the Ctsd activity from WT lysates bound the CI-MPR column."
sparser
"Newly synthesized CTSD binds CI-M6PR in the TGN and is subsequently translocated into endosomes (Figure xref )."
sparser
"Interestingly, when analyzing the cathepsins' interaction with the CI-MPR, the authors observed that, unlike cathepsin H, which bound exclusively to sortilin, cathepsin D was also able to bind to the CI-MPR."
IGF1R affects FN1
| 2 2
| 2 2
sparser
"An interaction between IGF1R and fibronectin has been shown to inhibit apoptosis in pancreatic carcinoma cell lines through IGF1R transactivation [ xref ]."
reach
"Fibronectin can bind to and activate both integrin receptors and IGF-1R, thus triggering IGF-1R and phosphatidylinositol 3-kinase/protein kinase B signaling and enhancing survival of dopamine neurons."
reach
"An interaction between IGF1R and fibronectin has been shown to inhibit apoptosis in pancreatic carcinoma cell lines through IGF1R transactivation [XREF_BIBR]."
sparser
"Similarly, integrin β1 and the IGF-1R interactions with fibronectin mediated chemoresistance in the prostate cancer cell line DU145 xref ."
FN1 affects CD4
| 4
CD4 binds FN1. 4 / 4
| 4
sparser
"An in vitro study has shown that CD4 + T cell binding to fibronectin is blocked by antibodies against the VLA-β1 chain (CD29) (Shimizu et al., 1990) , suggesting the necessity of surface CD29 molecules for helper T cells to enter the CNS."
sparser
"Furthermore, taking advantage of ProteinChip technology, we analyzed the interaction of both proteins with CD4 and FN."
sparser
"A regulated interaction of human CD4 + T cells with FN and LN has been reported by Shimizu et al. [2], who observed that binding of CD4T cells is mini- mal unless the cells were activated through CD3 by PMA or CD2 by anti-CD2 mAb pair."
sparser
"Pharmacologic agents that raise intracellular cAMP enhanced the binding of immature CD4- CD8- and CD4+ CD8+ thymocytes to fibronectin while having no effect on the binding of the more mature JIId- thymocytes."
ENO1 affects CD47
| 2 2
| 2 2
sparser
"The interaction between CD47 and ENO1 was verified by co-immunoprecipitation (co-IP)."
sparser
"Our mechanistic investigations demonstrated that CD47 interacted with ENO1 and protected it from ubiquitin-mediated degradation, subsequently promoting glycolytic activity and phosphorylation of ERK in CRC cells."
reach
"Our mechanistic investigations demonstrated that CD47 interacted with ENO1 and protected it from ubiquitin mediated degradation, subsequently promoting glycolytic activity and phosphorylation of ERK in CRC cells."
reach
"The interaction between CD47 and ENO1 was verified by co-immunoprecipitation (co-IP)."
CD47 affects CALR
| 3 1
| 2 1
sparser
"Abnormalities in the PI3K/Akt signaling pathway deregulation of C/EBP-α and its partner PPAR-γ , and the interaction between calreticulin (CRT) and CD47 are also promising therapeutic targets."
sparser
"In DMM, calreticulin expression was not statistically associated with CD47 expression levels ( xref )."
reach
"Abnormalities in the PI3K and Akt signaling pathway deregulation of C/EBP-alpha and its partner PPAR-gamma, and the interaction between calreticulin (CRT) and CD47 are also promising therapeutic targets."
THBS1 binds CALR and CD47. 1 / 1
| 1
sparser
"These results unveil an autocrine mechanism of calreticulin-thrombospondin-1-CD47 interaction for the control of T cell motility and migration within three-dimensional extracellular matrix substrata."
VEGFA affects PTPRZ1
3 |
3 |
biogrid
No evidence text available
biogrid
No evidence text available
biogrid
No evidence text available
VEGFA affects CXCR4
| 2 1
| 2 1
sparser
"The expression of CXCR4 in BC cells was associated with increased expression of VEGF-A (Figure xref ), vimentin and p-GSK-3β and decreased expression of E cadherin (Figure xref )."
sparser
"We demonstrate here that the expression of CXCR4 in BC cells is associated with increased expression of VEGF-A. Increased expression of VEGF and its receptors correlates with increased MVD, cell proliferation, and tumor growth rate, which impairs patient survival in diverse cancers [ xref , xref , xref ]."
reach
"Specifically, VEGFA, CXCR4, GLUT1, HK2, and PFKFB3 were all associated with gained enhancers."
VEGFA affects CD47
| 2 1
THBS1 binds VEGFA and CD47. 2 / 2
| 2
sparser
"The increase in capillarity may be associated by changes in the interaction between VEGF-A, TSP-1, and CD47."
sparser
"Additional studies are required to investigate the signaling mechanism of (−)-epicatechin on the VEGF-A-TSP-1-CD47 interaction as well as determine the prolonged effects upon cessation."
| 1
reach
"The increase in capillarity may be associated by changes in the interaction between VEGF-A, TSP-1, and CD47."
VCAN affects ITGB1
1 2 |
1 2 |
hprd
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
TNF affects LRP1
| 3
| 3
sparser
"TNFα and IL1β are associated with the initiation of the APR after influenza infection, acting in the brain regions responsible for regulation of temperature, sleep, food intake and sickness behavior ( xref ; xref )."
sparser
"Moreover, Scuderi et al. [ xref ] and Andrade et al. [ xref ] showed that TNFα and IFNα may be associated with persistent LRP."
sparser
"Among these factors, only LRP, P-gp and TNF-α were associated with response to platinum-based chemotherapy."
TNF affects KCNN1
| 3
TNF activates KCNN1. 3 / 3
| 3
sparser
"TNFα activated Sk1 and induced its translocation to the smooth muscle cell membrane."
sparser
"As shown in Figure 2 , TNFα activates SK-1 in a biphasic pattern with significant increases observed at 10 minutes and 4 to 6 hours after TNFα treatment."
sparser
"First, TNFα-induced activation of SK-1 in ECs was confirmed using an enzymatic assay."
TNF affects CNR1
3 |
Transcriptionally active TNF increases the amount of CNR1. 3 / 3
3 |
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
TNF affects AXL
| 1 2
TNF increases the amount of AXL.
| 2
TNF increases the amount of AXL. 2 / 2
| 2
reach
"TNF and IFN-alpha also elevated Axl expression (XREF_FIG)."
reach
"Since it had been reported that Axl regulates TNFalpha transcription through induction of TWIST, we analyzed TWIST expression but found no difference in the amount of TWIST RNA between naive and EAE induced Axl-/- and WT mice (data not shown)."
TNF binds AXL.
| 1
TNF binds AXL. 1 / 1
| 1
sparser
"Increased formation of AXL-NTF triggers subsequent intracellular cleavage."
TIMP1 affects PTGER3
| 3
| 3
sparser
"Inhibition of PGE 2 production by both EPA and DHA has been reported; however, formation of PGE 3 by EPA with human lung cancer cells has not been clearly demonstrated previously due to the lack of an adequate analytical method."
sparser
"Concomitant with the reduction of PGE 2 , incubation with EPA (100 μM) significantly increased PGE 3 formation from 0.43±0.15 ng/5 million cells in control cells to 5.12±1.05 ng/5 million cells in treated cells ( p <0.001) ( Fig. 8 )."
sparser
"These data suggest again that the lack of antiproliferative activity of EPA in H1299 cells may be associated with the relative lack of formation of PGE 3 due to a lower level of COX-2 expression."
THBS1 affects SDC4
| 1 2
| 1 2
reach
"There are indications that binding of TSP-1 to syndecan-4 proteoglycan mediates tubulogenesis and their protection from apoptosis [XREF_BIBR]."
sparser
"There are indications that binding of TSP-1 to syndecan-4 proteoglycan mediates tubulogenesis and their protection from apoptosis [ xref ]."
reach
"However, by binding to syndecan-4, TSP-1 can also exert pro angiogenic effects, protecting ECs from apoptosis and stimulating tubulogenesis [XREF_BIBR]."
THBS1 affects CD4
| 1 2
| 1 2
reach
"Given the lack of empirical data and the complexity of the signaling processes, we set out here to interrogate potential mechanisms for the inhibition of VEGF and VEGFR2 signaling to ERK1/2 and calcium by TSP1 and CD4 interaction utilizing a detailed rule based model of VEGF signaling to ERK1/2 and calcium incorporating VEGFR2, the co-receptor NRP1, and the detailed dynamics of the receptors."
reach
"Additionally, TSP-1 binds CD4 to block HIV entry into target cells."
sparser
"Additionally, TSP-1 binds CD4 to block HIV entry into target cells ( xref )."
SPP1 affects OSMR
| 3
| 3
sparser
"Indeed increased expression of tartrate-resistant acid phosphatase (Acp5), bone sialoprotein (spp1), osteopontin and oncostatin M receptor was associated with chronic MHV induced CNS disease ( xref )."
sparser
"g003 osteopontin and oncostatin M receptor was associated with chronic MHV induced CNS disease TREM2/DAP12 mRNA expression."
sparser
"Indeed increased expression of tartrate-resistant acid phosphatase (Acp5), bone sialoprotein (spp1), osteopontin and oncostatin M receptor was associated with chronic MHV induced CNS disease (Table S4 )."
SORT1 affects CTSD
| 1 2
| 2
reach
"In mammals, cathepsin D (aspartyl protease), prosaposin C and acid sphingomyelinase can also interact with their receptor sortilin via stretches of amino acids."
reach
"Cathepsin H has previously been demonstrated to interact with sortilin, while cathepsin D interacts with both sortilin and the M6PR."
SORT1 binds CTSD and M6PR. 1 / 1
| 1
sparser
"Cathepsin H has previously been demonstrated to interact with sortilin, while cathepsin D interacts with both sortilin and the M6PR."
SLC2A1 affects PTK2B
1 1 | 1
1 1 | 1
reach
"Glucose stimulated the phosphorylation of tyrosine residues 402 and 881 in PYK2 and binding of PYK2 to Myc-Glut1."
biogrid
No evidence text available
hprd
No evidence text available
SLC2A1 affects KCNH2
| 3
| 3
sparser
"Moreover, hERG1 presence associated with Glut-1 absence represents an independent negative prognostic factor in TNM I and II colorectal adenocarcinomas [ xref ]."
sparser
"Finally, in a cohort of primary nonmetastatic CRC samples it was shown that hERG1 expression was associated with Glut-1 (glucose transporter 1), VEGF-A, CA-IX (carbonic anhydrase IX), and EGF-R expression [ xref ]."
sparser
"The expressions of hERG1 and Glut-1 were significantly associated ( P =0.001), whereas no significant association between KCa3.1 and the other two biomarkers emerged."
SEL1L affects AMFR
1 | 1 1
1 | 1 1
sparser
"Derlin-1 bound to mutant and WT YOD1 with a similar affinity ( xref , third panel, compare lane 6 with lane 5), whereas gp78, Sel1L, and Derlin-2 (another ERAD membrane component) did not interact with either WT or mutant YOD1 ( xref , second, fourth, and fifth panels, lanes 5 and 6)."
biogrid
No evidence text available
reach
"Hrd1, but not gp78, forms a complex with SEL1L and OS-9 that facilitates the degradation of substrate proteins by the UPS."
PTCH1 affects FN1
| 3
| 3
sparser
"While our previous studies suggest a direct interaction between the FN1 acidic patch residues and the basic residues found in the ST8Sia-IV PBR, this has yet to be shown."
sparser
"Instead, it seems that anastellin may bind to a non-specific hydrophobic “patch” of some undetermined size when it is exposed."
sparser
"CDON binds to PTCH1 via both the Fn(1) and Fn(2) repeats in its ectodomain."
PLAUR affects ENO1
| 2 1
| 2 1
reach
"In this study, we demonstrated that surface ENO1 interacted with plasminogen, uPA and uPAR on the PE089 and LLC and luc lung cancer cell lines."
sparser
"To directly examine the ability of these molecules to interact, we performed a cell-free dot blotting assay and found that ENO1, uPA, and uPAR interact with each other, while plasminogen only interacts with ENO1 ( xref )."
sparser
"ENO1 was able to interact with uPA, and uPAR; resulting in augmentation of cell migration and invasion."
OLR1 affects SCARB2
| 3
OLR1 activates SCARB2. 3 / 3
| 3
sparser
"Other studies suggest that OxLDL activation of CD36 occurs via engagement of the TLR4/TLR6 heterodimer, but not at the cell surface, in endosomes ( xref )."
sparser
"Another example of a cellular response induced by scavenger receptor is activation of CD36 by OxLDL."
sparser
"In contrast, CD36 signaling activation by oxLDL results in increased cholesterol deposition and nuclear sequestration of AMPK, diminishing β–oxidation ( xref ; xref )."
OLR1 affects JMJD6
| 3
| 3
sparser
"The expression profiles of CD36, SR class AI/II (SR-A), lectin-like receptor for oxidized low-density lipoprotein-1 (Lox-1), and SR that binds phosphatidylserine and oxLDL (SR-PSOX/CXCL16) were examined."
sparser
"Interaction of ox-LDL with the Mφ phosphatidylserine receptor may, at least in part, explain the direct inhibitory effect of ox-LDL on cytokine release."
sparser
"Calcium-dependent platelet aggregation through the interaction between phosphatidylserine and LOX-1."
OLR1 affects ANTXR1
| 3
| 3
sparser
"OxLDL binds to lectin-like oxLDL receptor 1 (LOX-1), cluster of differentiation 36 (CD36), and toll-like receptor 4 (TLR4) and causes cell death in human granulosa cells (GCs)."
sparser
"The purpose of this study is to investigate whether ox-LDL binding to lectin-like ox-LDL receptor 1 (LOX-1) enhances monocyte chemoattractant protein 1 (MCP-1) expression in cultured human articular chondrocytes (HACs)."
sparser
"OxLDL binding to its scavenger receptor, lectin-like OxLDL receptor 1 (LOX1), stimulates endothelial expression and secretion of pro-atherogenic enzymes and nicotinamide adenine dinucleotide phosphate-oxidase (NAD(P)H oxidase, NOX) - derived reactive oxygen species (ROS), reducing local nitric oxide (NO) levels ."
NR3C2 affects MME
| 3
| 3
sparser
"The antibody bound three polypeptides with Mr = 180,000, 56,000 and 32,000 in hydroxylapatite fraction of 10S DNA polymerase alpha by immunoblot."
sparser
"Sodium dodecyl sulfate-polyacrylamide gel electrophoresis in the presence and absence of 2-mercaptoethanol indicated that in Peak II, catalytically active Mr 29,500 protein is associated with the other two polypeptides by disulfide bonds."
sparser
"Furthermore, these polypeptides typically may interact with low Mr compounds as Heme, vitamins, metal ions, etc."
NR3C2 affects IL10
| 3
| 3
sparser
"IL10 gene variants rs1800896 and rs3024498, which were associated with incident MCR, have not, to our knowledge, been reported to predict incident MCI."
sparser
"The association of IL10 SNPs, rs1800896 (HR = 1.673; 95%CI= 1.200–2.331; p value=0.002) and rs3024498 (HR =1.896; 95%CI= 1.290–2.786; p value=0.001) with incident MCR in the full model was significant even when adjusted for OPUS/OPEL status to account for the LonGenity study design."
sparser
"The association of the IL10 polymorphisms rs1800896 (HR= 1.758; 95%CI= 1.208–2.560; p value=0.003) and rs3024498 (HR= 1.984; 95%CI= 1.305–3.017; p value=0.001) with incident MCR still remains significant even after removing these 15 MCI cases."
NOTCH1 affects CCL4
| 1 2
| 1 2
reach
"NICD subsequently migrates into the nucleus and binds to the transcription factor CBF-1 and RBP-J, Su (H), Lag-1 (CSL), which in Drosophila melanogaster is known as Suppressor of Hairless, or Su (H) (see also XREF_FIG)."
reach
"In the nucleus, NICD interacts with LAG-1 and LAG-3 (a homolog of mastermind transcriptional co-activators) to activate the expression of Notch target genes (XREF_FIG A)."
sparser
"In this Notch signaling process, the cleaved LIN-12/Notch intracellular domain (NICD) binds to the LAG-1/CSL transcriptional repressor, forming a transcriptional activator complex containing LAG-1 and NICD."
MME affects FGFR1
| 3
| 3
sparser
"Finally, Smith et al. used phage display techniques to generate Avimer Tm polypeptides that can simultaneously bind with high affinity FGFR1c and KLB, thus maintaining selectivity for the FGF21 receptor complex xref ."
sparser
"A-domain library is screened for Avimer™ polypeptides that bind FGFR1 or β-Klotho ( xref )."
sparser
"Both polypeptides interact with FGFR1 with similar affinity [37,38] ."
ITGAM affects F3
| 3
ITGAM binds F3.
| 2
| 2
reach
"The physiologic agonists collagen and ADP increased monocyte-platelet and neutrophil-platelet aggregates and increased leukocyte surface Mac-1 and CD11b and surface bound tissue factor, FXa and fibrinogen."
reach
"Geometric mean fluorescence and per cent positive data were collected for each subpopulation to measure the binding of test antibodies directed at CD42a, tissue factor, coagulation FXa, bound fibrinogen, activated Mac-1, and CD11b."
ITGAM increases the amount of F3.
| 1
ITGAM increases the amount of F3. 1 / 1
| 1
reach
"TF was expressed by CD11b + / F4/80 + macrophages specifically in the inflammation prone VAD and at higher levels in CD11b + / CD11c + versus CD11b + / CD11c - adipose tissue macrophages (XREF_FIG)."
ITGAM affects CD44
| 1 2
ITGAM increases the amount of CD44.
| 2
ITGAM increases the amount of CD44. 2 / 2
| 2
reach
"We found that CD44 in 4-month-old mice was highly expressed by all CD11b + CD45 high but not CD11b + CD45 low CNS MPs in WT and 5xFAD mice, suggesting that CD11b + CD45 high CNS MPs may be of peripheral origin but it still remains possible that CD44 expression is upregulated by microglia with aging and in inflammatory states."
reach
"We also found that CD44, recently suggested as a marker of peripherally derived CNS infiltrating immune cells in mice, was highly expressed by CD11b + CD45 high CNS MPs but not by CD45 low CNS MPs in both WT and 5xFAD mice."
ITGAM binds CD44.
| 1
| 1
sparser
"Fig. 6 E shows that CD44 expression is closely associated with CD11b expression in leukemia cells treated with cyclopamine (correlation coefficient r = 0.76)."
IL1B affects ITGB8
| 3
IL1B increases the amount of ITGB8. 3 / 3
| 3
reach
"Here we report the mechanism of increased ITGB8 expression by IL-1beta."
reach
"IL-1beta activates Itgb8 expression by chromatin remodeling and exposure of binding sites for additional transcription factors, and the expression of Itgb8 in different cell types corresponds with the chromatin state of the Itgb8 core promoter."
reach
"We have previously shown that the proinflammatory cytokine interleukin-1beta (IL-1beta) increases ITGB8 expression on lung fibroblasts, which increases alphavbeta8 mediated TGF-beta activation in fibrosis and pathologic inflammation."
IL1B affects IFNGR1
3 |
Transcriptionally active IL1B increases the amount of IFNGR1. 3 / 3
3 |
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
IL10 affects PTGER3
| 3
IL10 binds PTGER3.
| 2
| 2
sparser
"Three regulatory factors associated with mucosal tissues, PGE(2), IL-10, and TGFbeta, inhibited the ability of spleen pDCs to produce type I IFN in a dose-dependent fashion."
sparser
"Since formation of lipid bodies (LB) and PGE(2) production have been associated with IL-10 induction, the effect of PGE(2), the formation of LB, and the role of PPAR-γ were assessed."
IL10 inhibits PTGER3.
| 1
IL10 inhibits PTGER3. 1 / 1
| 1
sparser
"At variance with TGF-1, IL-10 inhibited both LPS-induced PGE and NO synthesis, the effect being more pronounced in the case of PGE release ( )."
IL10 affects CD44
| 3
| 3
sparser
"A phosphorylation-dependent interaction between the amino-terminal portion of Eta-1 and its integrin receptor stimulated IL-12 expression, whereas a phosphorylation-independent interaction with CD44 inhibited IL-10 expression."
sparser
"The protection was associated with suppression of early IL-10 and IL-13 production as well as expansion of CD44 hi CD4 + and CD8 + T cells."
sparser
"Alone, IL-10 induced HA binding to PBMC monocyte CD44, while in contrast, IL-10 inhibited IL-1-induced monocyte CD44 binding to HA."
HLA-A affects DERL1
2 1 |
2 1 |
biogrid
No evidence text available
biogrid
No evidence text available
hprd
No evidence text available
VEGFA affects TLR4
| 1 1
| 1 1
reach
"We demonstrated here, for the first time, that both drugs have potent pro inflammatory effects, mediated via activation of Toll like receptor 4 on the endothelial cell surface by drug bound to VEGF-A."
sparser
"We report that both drugs markedly increase gene expression and protein secretion of chemokines on endothelial cells, a process that is dependent on drug binding to secreted VEGF-A with subsequent activation of Toll-like receptor 4."
VEGFA affects INSR
| 1 1
VEGFA increases the amount of INSR.
| 1
VEGFA increases the amount of INSR. 1 / 1
| 1
reach
"Our results have shown that the insulin receptor regulates VEGF-A transcription and expression, which is consistent with literature that IGF-I and insulin regulate VEGF-A through hypoxia inducible factor-1alpha (HIF1alpha) in other types of cancer."
VEGFA binds INSR.
| 1
VEGFA binds INSR and KIT. 1 / 1
| 1
sparser
"Moreover, important mechanisms of biological interaction between VEGFA-KIT and VEGFA-INSR were also observed."
VEGFA affects FGFR1
| 2
| 2
sparser
"Increased levels of c-met are associated with VEGFA and FGFR-1, all of which contribute to angiogenic processes [ xref ]."
sparser
"VEGFA was significantly associated to FGFR1 , HIF1A , KDR1 ( VEGFR) , PDGFA and FGF2 . xref depicts the correlation between gene expression levels."
VEGFA affects AQP1
| 1 1
| 1 1
sparser
"AQP1 may interact with VEGFA and play a role in VM, especially under hypoxic conditions, but the heterogeneity of MM cells may result in different dominant pathways between patients."
reach
"AQP1 may interact with VEGFA and play a role in VM, especially under hypoxic conditions, but the heterogeneity of MM cells may result in different dominant pathways between patients."
VDAC2 affects RPN1
2 |
2 |
biogrid
No evidence text available
biogrid
No evidence text available
VDAC1 affects RPN1
2 |
2 |
biogrid
No evidence text available
biogrid
No evidence text available
TSPO affects FN1
| 2
| 2
reach
"However, an isogenic strain producing OspC from B. garinii strain PBr, which binds fibronectin but not dermatan sulfate, colonized the skin, heart and bladder, but not joints."
reach
"However, our attempts to fit the ITC data to a two binding site model to account for alternative and/or dual binding sites generated errors that were significantly larger than those generated when we fit the ITC data to a one-site model, supporting our interpretation of the interaction between PBR and FN1."
TRPM7 affects TNF
| 2
| 2
sparser
"Our results further showed that TNFα did not directly interact with TRPM7, indicating that TNFα was not a direct activator of TRPM7 channel."
sparser
"Furthermore, co-immunoprecipitation assay showed that TNFα did not directly interact with TRPM7 in SNU739 and HLF cells (Additional file xref : Figure S1i)."
TRPA1 affects IL1B
| 1 1
| 1 1
reach
"In addition to the mechanisms described above, a more direct interaction between TRPA1 and IL-1beta in MSU crystal induced inflammation is possible, as TRPA1 activation has been reported to enhance IL-1beta production in keratinocytes [XREF_BIBR], and a similar effect was found in the present study in the air-pouch model."
sparser
"In addition to the mechanisms described above, a more direct interaction between TRPA1 and IL-1β in MSU crystal-induced inflammation is possible, as TRPA1 activation has been reported to enhance IL-1β production in keratinocytes [ xref ], and a similar effect was found in the present study in the air-pouch model."
TNFRSF1A affects IL1RN
| 2
sparser
"Several investigators also found increases in sTNFR1 in the serum of SZ patients. xref reported association of TNFR1 and IL-1RA with general severity of psychotic symptoms in SZ."
sparser
"Hope et al. (2013) reported association of TNFR1 and IL-1RA with general severity of psychotic symptoms in SZ."
TNF affects SORT1
| 1 1
| 1 1
sparser
"Here, we report that in addition to trophic factor production, muscle produces proBDNF that may promote MN death via interaction with the p75 NTF receptor and sortilin."
reach
"Using coimmunoprecipitation and surface plasmon resonance (SPR) we replicated the interaction between PGRN and sortilin and that between TNF and TNFRI/II, but not the interaction between PGRN and TNFRs."
TNF affects ROBO1
| 2
| 2
reach
"Slit processing generates an N-terminal fragment (SlitN) that binds to Robo1 and Robo2 receptors and mediates Slit repulsive activity, as well as a C-terminal fragment (SlitC) with an unknown receptor and bioactivity."
reach
"Its N-terminal fragment (approximately 120kDa), termed Slit2N, can bind to Robo1 to inhibit gp120 and co-receptor-induced cytoskeletal rearrangements associated with LIMK- and cofilin regulated actin polymerization in activated and resting CD4 + T cells."
TNF affects RHO
| 2
TNF activates RHO. 2 / 2
| 2
sparser
"It is established that TNFα can activate Rho family GTPases, including Rac/Cdc42 [ xref – xref ] and RhoA [ xref ]."
sparser
"TNF- α -induced activation of Rho family GTPases has also been reported in diverse cellular contexts ( xref - xref ), but the molecular events underlying and regulating the activation process remain poorly understood."
TNF affects PTPN6
| 2
| 2
sparser
"SHP-1 is also associated with the inhibition of endothelial cell proliferation mediated by TNF-alpha and the reduction in angiogenesis by the inactivation of KDR/flk-1 [ xref ]."
sparser
"In endothelial cells, SHP-1 is physically associated with VEGFR2 and is also required for both TNFα-mediated and tissue-inhibitor of metalloproteinases (TIMP)-mediated inhibition of angiogenesis xref ."
TNF affects PLXNA3
| 2
TNF activates PLXNA3. 2 / 2
| 2
sparser
"TNFα alone does not strongly activate J-Lat 6.3, 8.4 and 9.2 cells, as shown in Fig. xref , and as reported [ xref ]."
sparser
"Although there were differences in the extent of activation that depended on the order of addition, Aza-CdR always enhanced activation of J-Lat 6.3 by TNFα, with FI-Aza ranging between 3.8 and 1.9."
TNF affects PLXNA2
2 |
2 |
biogrid
No evidence text available
biogrid
No evidence text available
TNF affects NRP1
2 |
2 |
biogrid
No evidence text available
biogrid
No evidence text available
TNF affects NEO1
2 |
2 |
biogrid
No evidence text available
biogrid
No evidence text available
TNF affects KCNH1
| 2
TNF inhibits KCNH1. 2 / 2
| 2
sparser
"Analysis of several satellite cell regulators revealed that TNFα is capable of inhibiting Notch-1 in satellite cells and C2C12 myoblasts, which was also found to be dependent on NF-κB. Notch-1 inhibition occurred at the mRNA level suggesting a transcriptional repression mechanism."
sparser
"Analysis of several satellite cell regulators revealed that TNFalpha is capable of inhibiting Notch-1 in satellite cells and C2C12 myoblasts, which was also found to be dependent on NF-kappaB."
TNF affects HRH1
| 2
TNF inhibits HRH1.
| 1
TNF inhibits HRH1. 1 / 1
| 1
sparser
"These results show that IL-1 alpha and TNF-alpha inhibit histamine- and carbachol-stimulated isolated parietal cell secretion and that, for IL-1 alpha, this effect does not depend on mucosal prostaglandin synthesis."
TNF binds HRH1.
| 1
| 1
sparser
"The release of pre-formed histamine and TNF-α and the newly-formed arachidonic acid metabolites are largely responsible for the early symptoms of the asthmatic reaction including bronchoconstriction [ xref , xref ]."
| PMC
TLR4 affects BST2
| 2
| 2
sparser
"This decrease in TLR4 mRNA was associated with decreased surface expression of TLR4/MD2 complex, measured by flow cytometry (66 ± 14%, n=4, p <0.03) ( xref )."
sparser
"This study was aimed to assess the effects of BUD, ACL and FO in bronchial epithelial cells exposed to cigarette smoke extract (CSE) by evaluating: a) Expression of TLR4 and survivin and LPS binding by flow cytometry; b) expression of HDAC2, HDAC3, SIRT1 and FoxO3 and activation of the ERK 1/2 pathway by western blot; c) IL-8 mRNA levels and release by Real Time-PCR and ELISA, respectively."
TIMP1 affects F3
| 2
| 2
reach
"Besides, an association between TIMP-1 and APACHE-II (rho = 0.33; P = 0.001), TF (rho = 0.43; P < 0.001), and TNF-alpha (rho = 0.43; P < 0.001) was found in our study."
reach
"We found an association between TIMP-1 and APACHE-II (rho = 0.33; P = 0.001), TF (rho = 0.43; P < 0.001) and TNF-alpha (rho = 0.43; P < 0.001) (XREF_TABLE)."
THBS1 affects ITGAV
1 1 |
1 |
biogrid
No evidence text available
1 |
hprd
No evidence text available
THBS1 affects F3
| 2
| 2
sparser
"However, further studies are required to determine whether TIPE2 participates in the pathogenesis of asthma by interacting with the coagulation substances TF and TSP-1."
sparser
"The results of the current study indicated that anti-inflammatory TIPE2 levels are associated with levels of the coagulation substances TF and TSP-1."
SPP1 affects S1PR1
2 |
2 |
omnipath
No evidence text available
omnipath
No evidence text available
SPP1 affects CXCR4
| 1 1
| 1 1
sparser
"Zhang et al. demonstrated that in cell lines from hepatocellular carcinoma, as an analogue of SDF-1, OPN can also bind to CXCR4 and promote cell migration [ xref ]."
reach
"Zhang et al. demonstrated that in cell lines from hepatocellular carcinoma, as an analogue of SDF-1, OPN can also bind to CXCR4 and promote cell migration [XREF_BIBR]."
SPP1 affects CD4
| 2
| 2
sparser
"Here we report that activation of ICOS in CD4(+) T cells promoted interaction of the p85α regulatory subunit of the signaling kinase PI(3)K and intracellular osteopontin (OPN-i), followed by translocation of OPN-i to the nucleus, its interaction with Bcl-6 and protection of Bcl-6 from ubiquitin-dependent proteasome degradation."
sparser
"Studies have also shown that the absence of OPN is associated with B-cell abnormalities including the generation of memory B-cells and their persistence as early as primary HIV or SIV infection ; decreased levels of OPN have also been associated with impaired CD4 T-cell migration and survival ."
SLC2A1 affects SLC1A5
| 2
| 2
sparser
"In the present study, we found that ASCT2 expression was positively associated with GLUT1 expression."
sparser
"Expression of both GLUT1 and ASCT2 was associated with tumor size ( p < 0.01, xref )."
SLC2A1 affects PLAUR
| 2
SLC2A1 activates PLAUR. 2 / 2
| 2
sparser
"CSE-induced uPAR signaling pathway activation in cultured HSAEpiCs."
sparser
"These EMT-associated molecular and phenotypic changes are due to CSE-induced uPAR expression and activation of uPAR dependent cell signaling."
SLC2A1 affects NPR2
| 2
| 2
sparser
"Furthermore, Lam2 physically interacted with Npr2 and Gtr1."
sparser
"These findings suggest that Lam2 forms a physical complex with Gtr1 and Npr2."
RTN4R affects FN1
| 2
| 2
sparser
"The conformation imposed by mAbs C and E more strongly inhibits interactions of CD13 with fibronectin, NGR motifs, or substrates, and thus these mAbs are good inhibitors of the enzymatic activity."
sparser
"Further support for the hypothesis that the sites involved in cell-cell adhesion are not the same as those involved in binding to fibronectin and NGR motifs comes from the fact that binding of CD13 to fibronectin and NGR motifs is not favored, but rather slightly inhibited, after crosslinking by mAb 452."
RPN1 affects OPRM1
2 |
RPN1 binds OPRM1.
1 |
1 |
signor
"Ribophorin i (rpni), a component of the oligosaccharide transferase complex, could directly interact with mor. Rpni can be shown to participate in mor export by the intracellular retention of the receptor after small interfering rna knockdown of endogenous rpni."
RPN1 activates OPRM1.
1 |
RPN1 activates OPRM1. 1 / 1
1 |
signor
"Ribophorin i (rpni), a component of the oligosaccharide transferase complex, could directly interact with mor. Rpni can be shown to participate in mor export by the intracellular retention of the receptor after small interfering rna knockdown of endogenous rpni."
RNF149 affects ACVR1
2 |
2 |
biogrid
No evidence text available
biogrid
No evidence text available
PTGER4 affects IL1B
| 2
| 2
reach
"Furthermore, IL-1 beta can interact with NO and PGE2 during steroid genesis [XREF_BIBR]."
reach
"Following the above concept, we have at- tempted to characterize in vitro the interactions between IL-1B, IL-6, TNF-ot, LTB4 and PGE2, the major pro in- flammatory cytokines and eicosanoids of hp-Mth."
PTCH1 affects HLA-A
2 |
2 |
biogrid
No evidence text available
biogrid
No evidence text available
PLXNB2 affects LMAN2
2 |
2 |
biogrid
No evidence text available
biogrid
No evidence text available
PKD1 affects FN1
1 1 |
1 1 |
hprd
No evidence text available
biogrid
No evidence text available
OSMR affects FN1
| 2
| 2
sparser
"These data reinforce our evidence that the TGM2–integrin– α 5 β 1–fibronectin interactions that are activated by OSMR stimulation in SCC cells are of biological and clinical significance."
sparser
"The morphological changes were associated with gain of the expression of the mesenchymal marker proteins SMA and fibronectin ( xref , xref ) and induced expression of the mesenchymal genes Chi3l1/YKL40, Acta2/SMA, CTGF and OSMR ( xref )."
OSM affects NR3C2
| 2
| 2
sparser
"The 32,000-Mr form of oncostatin M was not produced by cells transfected with plasmids (G195 and G196) in which a potential trypsinlike cleavage site within the hydrophilic C-terminal domain was altered by site-directed mutagenesis."
sparser
"A 32,000-Mr fragment was produced by trypsin treatment of the 36,000-Mr form of oncostatin M. These observations suggest that the 32,000-Mr form of oncostatin M was derived from the 227-amino-acid propeptide by proteolytic cleavage at or near the paired basic residues at positions 195 and 196."
OLR1 affects TRPV1
| 2
OLR1 activates TRPV1. 2 / 2
| 2
sparser
"In addition, oxLDL activated TRPV1 and elicited calcium (Ca 2+ ) influx, which were abrogated by the pharmacological TRPV1 antagonist capsazepine."
sparser
"Zhao and colleagues found that oxLDL-stimulated bone marrow-derived macrophages showed an increased level of TRPV1 expression and oxLDL activated TRPV1 which led to intracellular Ca 2+ -transients that were abolished by superfusion with the TRPV1 antagonist capsazepine."
OLR1 affects NOTCH1
| 2
OLR1 activates NOTCH1. 2 / 2
| 2
sparser
"The results of the present study show that oxLDL is capable of activating NF-κB and Notch1."
sparser
"It seems that a mechanism that contributes to the enhancement of Notch1 activation by oxLDL is the up-regulated secretion of Notch1 ligands."
OLR1 affects LRP6
| 2
| 2
sparser
"The direct binding of oxPLs to LRP6 was also detected by a protein lipid overlay (PLO) assay, xref , xref in which the in vitro binding of the same amount of nLDL and oxLDL to full length LRP6 or the extracellular domain of LRP6 (LRP6N) was detected."
sparser
"Consistently, oxLDL and POVPC, but not nLDL, interacted with purified LRP6 extracellular domain fused with GST (GST-LRP6N) (Fig.  xref )."
NR3C2 affects BST2
| 2
| 2
sparser
"Proc Natl Acad Sci, US 73, 2881-2886 46 Darzynkiewicz Z, Traganos F, Staiano- Coico I,, Kapuscin- ski J, Melamed MR (1982) Interactions of rhodamine 123 with living cells studied by flow cytometry."
sparser
"Cytometry 1, 98-108 30 Darzynkievicz Z, Traganos F, Staiano-Coico L, Kapunscin- ski J, Melamed MR (1982) Interactions of rhodamine 123 with living cells studied by flow cytometry."
NPC1 affects CTSD
| 1 1
| 1
reach
"It has been recently shown that aspartyl cathepsin CtsD most likely indirectly binds to NPC1 and that NPC1 could modulate CtsD levels and processing [XREF_BIBR]."
CTSD binds ABCA1 and NPC1. 1 / 1
| 1
sparser
"First, CYCLO stimulated lysosomal proteolytic activity by increasing cathepsin D activity, levels of cathepsins B and D and two proteins known to interact with cathepsin D, NPC1 and ABCA1."
NOTCH1 affects FN1
| 2
| 2
sparser
"Still, DLK1 has been proposed to inhibit adipocyte differentiation through interaction with either NOTCH1 or FIBRONECTIN ( xref ). xref , xref However, the mechanism of DLK1 action is debated, and several other interaction partner(s) have been proposed as well. xref , xref - xref "
sparser
"After being secreted, the EMI domain, a small module rich in cysteine residues, is important to interact with type I collagen, fibronectin and Notch1; whereas the fas 1 domains interact with tenascin-C and BMP-1 [ xref – xref ]."
MME affects CD4
1 | 1
CD4 binds MME. 2 / 2
1 | 1
sparser
"Interestingly, antibody-mediated cross-linking of CD4 stimulates Lck kinase activity in murine thymocytes ( xref ) and T cell clones ( xref ), suggesting that binding of CD4 to MHC class II polypeptides under physiologic conditions may, by itself, stimulate Lck activity."
biogrid
No evidence text available
KRT1 affects CTSD
| 1 1
| 1 1
reach
"In the MB-435-based network 2 (XREF_FIG), the involvement of the TNFalpha and TGFbeta signaling axis is associated with RPSA, GLO1, and CTSD interactions with TNF as well as CTSD and KRT1 interactions with TGFB1."
sparser
"In the MB-435-based network 2 ( xref ), the involvement of the TNFα/TGFβ signaling axis is associated with RPSA, GLO1, and CTSD interactions with TNF as well as CTSD and KRT1 interactions with TGFB1."
JMJD6 affects CALR
| 2
| 2
sparser
"The cytoplasmic calreticulin binds to phosphatidylserine in the inner leaflet of the plasma membrane from where it is externalized as the plasma membrane loses its asymmetry."
sparser
"The second suggested pathway, relevant to apoptotic cells, involves the binding of cytosolic calreticulin to phosphatidylserine on the inner leaflet of the plasma membrane prior to apoptotic exposure of phosphatidylserine-calreticulin complexes on the cell surface ( xref )."
JMJD6 affects BST2
| 2
| 2
sparser
"We quantified the binding of fluorescent Annexin V to accessible phosphatidylserine in the outer cell membrane by cytometry, as a measure of early apoptotic events."
sparser
"Cytoplasmic free calcium mobilization in platelets, expression of P-selectin, phosphatidylserine, and microparticle formation, measured by whole blood flow cytometry, in hypertensive patients."
ITPR3 affects FGL2
2 |
2 |
biogrid
No evidence text available
biogrid
No evidence text available
ITGB1 affects ITGAM
| 2
| 2
sparser
"Therefore, compared to those in WT or apoE -/- mice on ND, CD11c + monocytes in apoE -/- on HFD were not only increased in number, but also displayed increased granularity with increased expression of CD11b and CD29, which are associated with cell activation."
sparser
"These CD11c + monocytes contained abundant lipid in the cytoplasm and expressed high levels of CD11b and CD29, which are associated with cell activation."
ITGAM affects LY75
| 1 1
ITGAM increases the amount of LY75.
| 1
ITGAM increases the amount of LY75. 1 / 1
| 1
reach
"Chimeric antibodies against lectin antigen-uptake receptors efficiently target antigen to specific DC subsets, including DCIR2 expressed by CD11b + cDC2 and DEC-205 expressed by CD8 + cDC1 and some migratory DCs."
ITGAM binds LY75.
| 1
| 1
sparser
"An additional study investigating intratracheal inoculation of Y. pestis showed the interaction of this bacterium with CD11c + DEC205 + CD11b- cells in the airways and lung."
ITGAM affects CD47
| 1 1
| 1 1
sparser
"Also, it is unknown whether more efficient association of CFH(Y402H) with CD47-CD11b has a parallel in its complement-inhibiting activity."
reach
"Using proximity ligation assay, the authors convincingly demonstrate a physical association between CD11b and CD47 on the retinal MC in the AMD models."
INPP5K affects FN1
| 1 1
| 1 1
sparser
"Conversely, the presence of entactin inhibited the binding of perlecan, laminin, and fibronectin to beta PPs."
reach
"Conversely, the presence of entactin inhibited the binding of perlecan, laminin, and fibronectin to beta PPs."
IL2RG affects CAPNS1
1 1 |
1 1 |
biogrid
No evidence text available
hprd
No evidence text available
IL1RN affects F3
| 2
IL1RN inhibits F3.
| 1
IL1RN inhibits F3. 1 / 1
| 1
sparser
"Analysis of the expression kinetics and regulation by IL-1 of the β-glucan-induced TFs identified by the genome-wide gene expression study uncovered the NFKBIZ gene (encoding IκB-ζ) as the earliest expressed, β-glucan-induced, TF that was inhibited by IL-1RA."
IL1RN binds F3.
| 1
| 1
sparser
"These treatments were also associated with increased IL-1ra, CD142, and VEGF ( xref , xref )."
IL1B affects SDC4
| 2
IL1B increases the amount of SDC4. 2 / 2
| 2
reach
"Wang et al. have demonstrated that IL-1beta treatment increases syndecan-4 (SDC4) expression and its promoter activity by activating NF-kappaB, leading to enhanced ADAMTS-5 synthesis and aggrecan degradation in human NP cells [72]."
reach
"Importantly, analysis of human NP tissues showed a strong correlation between levels of SDC4 and ADAMTS-5 with aggrecan neoepitopes, suggesting that an increase in SDC4 expression by cytokines IL-1beta and TNF-alpha contributes to aggrecan turnover in human disease."
IL1B affects PTGFR
| 2
IL1B increases the amount of PTGFR. 2 / 2
| 2
reach
"Induction of cyclooxygenase-2 and prostaglandin F2alpha receptor expression by interleukin-1beta in cultured human granulosa-luteal cells."
reach
"The IL-1beta treatment implicated by microarray analysis increased gene expression levels of PTGS-2, PTGFR, NFkappa-B p65, IL-17, and IL-8."
IL1B affects ITGB1
2 |
Transcriptionally active IL1B decreases the amount of ITGB1. 2 / 2
2 |
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
IL10 affects IFNAR1
| 2
| 2
sparser
"It will be interesting to investigate whether IFNAR equally interacts with IL-10 and IL-22 receptor complexes."
sparser
"Two way ANOVA analysis of IL-10 expression showed a significant effect of treatment ( F  = 7.04, df 1,15, p  = 0.0181) but not of strain ( F  = 2.06, df 1,15, p  = 0.1718) and no interaction ( F  = 3.40, df 1,15, p  = 0.0850) indicating that the poly I:C-induced increase in hippocampal COX-2 and IL-10 expression is attenuated in IFNAR1 −/− mice."
IL10 affects ANTXR1
| 2
| 2
sparser
"Human IL-10 binds IL-10 receptor 1 (IL-10R1) with 1000-fold higher affinity than EBV IL-10."
sparser
"Also, a recent study used in-vitro testing of peripheral blood monocytes of patients treated with TNFi to identify that transmembrane TNF crosslinking induced concentrations of soluble TNF receptor 1, soluble IL-1 receptor 1 and IL-10 strongly associated with good EULAR response (AUC 0.91–1.00) [ xref ]."
HLA-A affects ERBB3
2 |
2 |
biogrid
No evidence text available
biogrid
No evidence text available
FZD7 affects FN1
| 1 1
| 1 1
sparser
"In contrast, no interaction between FN and Fzd7 or between FN and Fzd1 was observed, as measured by co-IP with an anti-FN antibody."
reach
"Regarding the Sdc4/Fz7/JNK mechanism, previous studies have shown that Sdc4 and Fn1 can physically associate with Fzd7 to form a co and receptor complex that stimulates membrane recruitment of Disheveled and the activation of a non canonical Wnt signaling cascade including JNK and small Rho GTPases."
FN1 affects ITGB8
2 |
FN1 binds ITGB8.
1 |
1 |
omnipath
No evidence text available
FN1 activates ITGB8.
1 |
FN1 activates ITGB8. 1 / 1
1 |
omnipath
No evidence text available
FCGR1A affects IGF1R
| 2
FCGR1A activates IGF1R. 2 / 2
| 2
sparser
"Many years later, Pritichard et al. reported that IGF-I and GD-IgG could bind and activate IGF-IR ( xref )."
sparser
"Importantly, the finding of an induction by GD-IgG on hyaluronan production in the face of no response to TSH suggests the potential for GD-IgG activating IGF-1R. In aggregate, the reports of van Zeijl et al ( xref ) may share important similarities with that of Smith and Hoa ( xref )."
ENO1 affects EDNRA
| 2
| 2
sparser
"Ru(PPh(3))(3)HCl reacts with 1,1'-bis(diphenylphosphino)ferrocene (dppf) to give the 16-electron complex Ru(dppf)(PPh(3))HCl (1d), which upon treatment with NaBAr(4)(F), affords [Ru(dppf){(eta(6)-C(6)H(5))PPh(2)}H]BAr(4)(F) (8), in which the PPh(3) ligand binds eta(6) through one of the PPh(3) phenyl rings."
sparser
"A slightly bulkier m-terphenyl thiolate, SDmp, prevents its nickel complex from forming a Ni-Ni bond, and the mononuclear nickel(I) center of 3 is bound to PPh(3) and SDmp through interactions with the sulfur and a eta(2)-mesityl."
DMXL2 affects ANTXR1
2 |
2 |
biogrid
No evidence text available
biogrid
No evidence text available
CXCR4 affects C3
| 2
| 2
sparser
"The migration of PECs induced by C3a was associated with an increased expression (P < 0.05) of CXCR4 ( xref )."
sparser
"The present findings in mice had an important clinical correlate in ten patients with proteinuric nephropathy characterized by activated CD24-positive PECs, who exhibited glomerular accumulation of C3 and C3a associated with high expression of both CXCR4 and GDNF in the glomerular lesions."
CXCR4 affects BST2
| 2
| 2
sparser
"At multiple time points, we measured binding to surface CXCR4 by flow cytometry using 3 anti-CXCR4 antibodies: 12G5, 1D9, and 2B11."
sparser
"We next examined the binding of HCLX to cell-surface CXCR4 by flow cytometry."
CD44 affects BST2
| 2
| 2
sparser
"Treatment of MUC1-positive CD138+ cells from LEN-sensitive Patient 1 with GO-203 was associated with suppression of CD44 expression as determined by flow cytometry ( xref , left; xref )."
sparser
"Given that circulating CD45 - CD90 + CD44 + cells detected by flow cytometry were associated with early HCC recurrence, circulating cancer stem cell markers may have significant prognostic values in HCC [ xref ]."
CALR affects PTGER3
| 2
CALR inhibits PTGER3. 2 / 2
| 2
sparser
"The phagocytosis of latex particles and the release of superoxide, PGE and TNF-α is almost totally inhibited by RO 31-8220."
sparser
"The release of superoxide and PGE in THP-1 cells is almost totally inhibited by RO 31-8220 and by transfection of THP-1 cells with CMV-asPKC-α ."
CALR affects ABCA1
| 2
CALR binds ABCA1.
| 1
| 1
sparser
"The promising anti-inflammatory effect of SSa on LPS-stimulated primary mouse macrophages is associated with up-regulation of the LXRα-ABCA1 pathway which result in disrupting lipid rafts and reducing translocation of TLR4 to lipid rafts, thereby suppressing TLR4 mediated NF-κB and IRF3 signaling pathways induced by LPS."
CALR activates ABCA1.
| 1
CALR activates ABCA1. 1 / 1
| 1
sparser
"Moreover, SSa activated LXRα, ABCA1 and ABCG1."
VEGFA affects TRPC6
| 1
VEGFA activates TRPC6. 1 / 1
| 1
sparser
"We have shown, by whole-cell patch clamp of chinese hamster ovary cells overexpressing TRPC3 or TRPC6, that VEGF and OAG activate cation currents through heterologously expressed TRPC3 and TRPC6 channels [ xref ]."
VEGFA affects TRPC3
| 1
VEGFA activates TRPC3. 1 / 1
| 1
sparser
"We have shown, by whole-cell patch clamp of chinese hamster ovary cells overexpressing TRPC3 or TRPC6, that VEGF and OAG activate cation currents through heterologously expressed TRPC3 and TRPC6 channels [ xref ]."
VEGFA affects S1PR1
1 |
Transcriptionally active VEGFA increases the amount of S1PR1. 1 / 1
1 |
biopax:pid
No evidence text available
VEGFA affects RYR2
| 1
| 1
sparser
"Ryr2 and Cacna1g were strongly positively associated to VegfA , with the r values of 0.814, and 0.730, respectively; while both are negatively associated to that of VegfB , with correlation r values of −0.463 and −0.436."
VEGFA affects PTPN6
| 1
| 1
sparser
"To determine the association of the SHP-1/p-STAT3/VEGF-A cascade and tumor metastatic ability, we analyzed the protein expression of SHP-1, p-STAT3, and VEGF-A in several TNBC cell lines."
VEGFA affects PTK2B
| 1
VEGFA phosphorylates PTK2B. 1 / 1
| 1
sparser
"VEGFA induced Pyk2 tyrosine phosphorylation in a time-dependent manner with maximum effect at 10 min ( xref )."
VEGFA affects NR3C2
| 1
VEGFA inhibits NR3C2. 1 / 1
| 1
sparser
"It is interesting that, neither VEGF nor RCC supernatants were able to inhibit MLR if they had been added only during DC maturation/activation, rather than during the 7-day differentiation culture from monocytes."
VEGFA affects MMD
| 1
| 1
sparser
"Both the concentrations of VEGF-A (P = 0.25) and MMP-2 (P = 0.69) were not significantly associated with MMD after adjusting for AL."
VEGFA affects LYVE1
1 |
1 |
biogrid
No evidence text available
VEGFA affects KCNH2
| 1
| 1
sparser
"A similar approach might be applied to VEGF-A whose high expression is associated with poor prognosis [ xref ]: in fact, we showed that in colorectal [ xref ] and gastric [ xref ] cancers hERG1 expression is significantly associated with VEGF-A expression and the combined therapy with bevacizumab and hERG1 blockers impairs tumor growth in mouse models [ xref ]."
VEGFA affects IGF1R
| 1
| 1
sparser
"High levels of serum VEGF-A, IGF-I and IGF-IR were significantly associated with the presence of lymph nodes metastasis (P=0.007, P=0.007 and P=0.03, respectively) and incidence of mortality (P<0.001, P=0.009 and P=0.03, respectively)."
VEGFA affects AGTR1
| 1
| 1
reach
"In this study we evaluated the possible association between VEGFA, eNOS, AGT, AGTR1, ACE, and HMOX-1 gene polymorphisms and the development of the most frequent prematurity complications, namely RDS requiring MV, BPD, IVH and ROP in a large population of preterm infants."
VDAC3 affects RPN1
1 |
1 |
biogrid
No evidence text available
VDAC2 affects MME
1 |
1 |
biogrid
No evidence text available
VDAC2 affects FN1
1 |
1 |
biogrid
No evidence text available
VDAC1 affects MME
| 1
| 1
sparser
"The finding that imported polypeptides bind to a specific region of the VDAC protein implicates this channel in the process by which precursor proteins are recognized at and translocated across the mitochondrial outer membrane."
VCAN affects EBP
| 1
VCAN inhibits EBP. 1 / 1
| 1
sparser
"Efficient repair by re-synthesis of elastic fibers in alveoli of COPD patients may be hampered by the inhibition of EBP by versican, particularly by its CS/DS chains ( xref )."
TSPO affects TNF
| 1
| 1
sparser
"The decrease in TSPO mRNA was associated with a decrease in TNFα mRNA as well as a decrease in CXCL10."
TRPV1 affects MME
| 1
| 1
sparser
"Molecular docking made possible establishing the spatial structure of the complexes, the nature of the polypeptides binding with TRPV1, as well as functionally important structural elements involved in the complex formation."
TRPV1 affects IL10
| 1
| 1
sparser
"DPV576-induced TRPV1 expression was associated with significant inhibition in the secretion of IFN-γ and increase in IL-10."
TRPM4 affects TNF
| 1
| 1
sparser
"Coexpression of Sur1 and Trpm4 in necrotic endothelial cells was also associated with vasogenic edema indicated by upregulated perivascular tumor necrosis factor, extravasation of serum immunoglobulin G, and associated inflammation."
TRPC5 affects SLC2A1
| 1
| 1
sparser
"Recent study showed that elevated expression of TrpC5 and GLUT1 is associated with chemo-resistance in CRC patients [ xref ]."
TRPC1 affects MME
| 1
| 1
sparser
"TRPC1 forms heterotetramers with other TRPC polypeptides resulting in cation channels which are non-selective."
TRAM1 affects HLA-A
1 |
1 |
biogrid
No evidence text available
TNFSF9 affects SCN3B
1 |
1 |
biogrid
No evidence text available
TNFRSF1A affects MIF
| 1
| 1
sparser
"In an analysis of multiple markers simultaneously, increased IL-8 [AHR, 0.80, 95% confidence interval (95% CI) 0.70-0.91, P < 0.001] and TNFR-I (AHR, 0.63, 95% CI 0.50-0.79, P < 0.001) were associated with slower recovery, and increased IL-8 (AHR, 1.26, 95% CI 1.14-1.39, P < 0.001); MIF (AHR, 1.18, 95% CI 1.08-1.28, P < 0.001) and TNFR-I (AHR, 1.26, 95% CI 1.02-1.56, P < 0.03) were associated with mortality."
TNFRSF1A affects IL1B
| 1
| 1
reach
"Previous studies reported that IL1beta and TNFalpha exert toxic effects by binding to their cognate receptors, IL1-R1 and TNFR1, respectively, triggering downstream signaling pathways that activate transcription factors, such as NFkappaB or AP1 which in turn lead to the production of NO and ROS."
TNFRSF1A affects IL10
| 1
| 1
reach
"IFN alpha can impact on dendritic cell differentiation (Luft et al., 1998; McRae et al., 2000) and controls the expression of various pro inflammatory cytokines such as IL-8 or IL-18 (Aman et al., 1993; Kaser et al., 2002) and induces several anti-inflammatory mediators such as IL-1 receptor antagonist (IL-1Ra), soluble TNF receptor p55, IL-10 and IL-18 binding protein (Aman et al., 1996; Tilg et al., 1993, 1995)."
TNFRSF1A affects ADAM8
| 1
sparser
"ADAM8 activity was also associated with TNFR1 release, and ADAM8 cleavage of TNFR1 has been previously observed in the context of neurodegeneration xref ."
TNFRSF11A affects BST2
| 1
sparser
"For the RANK expression analysis, a concordant expression pattern was observed using mAbs in IHC on a variety of positive and negative controls compared with expression analysis tested using other methods, such as flow cytometry using mAbs which bind RANK via distinct epitopes and RT-PCR."
TNF affects TGFBR1
| 1
| 1
sparser
"Although the data obtained to date are preliminary, they confirm that the binding of TNFa to its type I receptor is associated with endothelial cell activation and hypotension."
TNF affects SORL1
| 1
| 1
sparser
"Here we showed that Ldlr gene deficiency was associated with an impaired overexpression of both IL-6 and TNFα during the early phases of liver regeneration after PH."
TNF affects RTN4R
| 1
| 1
sparser
"In fact, tumor vessels, but not other CD13-expressing tissues, express a functionally active form of CD13 that binds NGR-TNF [ xref ]."
TNF affects ROBO2
| 1
| 1
reach
"Slit processing generates an N-terminal fragment (SlitN) that binds to Robo1 and Robo2 receptors and mediates Slit repulsive activity, as well as a C-terminal fragment (SlitC) with an unknown receptor and bioactivity."
TNF affects PTGER3
| 1
| 1
sparser
"These effects were associated with an increase in levels of PGE(2) and TNF-α."
TNF affects PDGFRA
| 1
TNF phosphorylates PDGFRA. 1 / 1
| 1
sparser
"TNF-α stimulated c-Src, PDGFR, and EGFR phosphorylation, which were reduced by PP1."
TNF affects PAQR3
| 1
TNF inhibits PAQR3. 1 / 1
| 1
sparser
"The possibility that TNFα is a more general antagonist of human PAQRs is supported by data shown in xref , which demonstrate TNFα-dependent inhibition of basal signaling of PAQR3, PAQR4, mPRγ, mPRβ and PAQR11."
TNF affects OPRM1
1 |
Transcriptionally active TNF increases the amount of OPRM1. 1 / 1
1 |
biopax:ctd
No evidence text available
TNF affects NTRK3
| 1
| 1
reach
"This assay showed that TrkC interacted with the N-terminal fragment containing the RING motif and C 2 H 2 zinc fingers of NTRAP (ZFS), but not with its C-terminal half (NTRAPc; XREF_FIG, A and B)."
TNF affects NALCN
| 1
| 1
sparser
"However, clinical use of non-selective TNF inhibitors is associated with an increased risk of infections."
TNF affects MMD
| 1
TNF inhibits MMD. 1 / 1
| 1
sparser
"The possibility that TNFα is a more general antagonist of human PAQRs is supported by data shown in xref , which demonstrate TNFα-dependent inhibition of basal signaling of PAQR3, PAQR4, mPRγ, mPRβ and PAQR11."
TNF affects LY96
| 1
| 1
sparser
"Furthermore, a genetically determined higher activity of LY96 (−1625 C>G) and TNFA (−308 G>A) was associated with reduced risk of UC."
TNF affects LGR5
| 1
| 1
sparser
"Results : Pten loss in Lgr5 + HFSCs promoted SCC formation, which was attenuated in TNF -/- mice."
TNF affects KCNK2
| 1
| 1
reach
"This binding was selective since NT was unable to displace the binding of 125 I-spadin and the N-terminal fragment Gln1-Arg16 bound to TREK-1 with a very low affinity (1 microM) close to that reported with NTSR3 and sortilin (XREF_FIG) XREF_BIBR."
TNF affects KCNA3
| 1
TNF activates KCNA3. 1 / 1
| 1
sparser
"Tumor necrosis factor-alpha-induced activation of macrophages increased Kv1.3 with no changes in Kv."
TNF affects ITGB3
1 |
Transcriptionally active TNF increases the amount of ITGB3. 1 / 1
1 |
biopax:ctd
No evidence text available
TNF affects IL17RC
| 1
| 1
sparser
"It has been shown that the full-length IL-17RC formed homodimer and inhibited TNFα-induced apoptosis in prostate cancer cells [ xref ]."
TNF affects IL10RB
| 1
| 1
sparser
"Furthermore, LGG -dependent increases in IL-10R2 were associated with reductions in TNF-α, MIP-2 and disease severity in a murine model of intestinal injury in the immature colon."
TNF affects GRIA1
| 1
TNF phosphorylates GRIA1 on S863. 1 / 1
| 1
reach
"Carrageenan induces TNF dependent phosphorylation of GluR1 at ser 845."
TNF affects GAL
| 1
TNF binds GAL. 1 / 1
| 1
sparser
"In contrast, Pioglitazone-induced PPARγ activation exacerbated D-galactosamine (GalN)/lipopolysaccharide (LPS) hepatitis associated with an increased production of TNFα by Kupffer cells and increased sensitivity of hepatocytes towards TNFα after in vivo Pioglitazone administration."
TNF affects FGFR1
| 1
| 1
sparser
"Here, we show that FGFR-1 can interact with the TNF receptor superfamily member fibroblast growth factor-inducible molecule 14 (Fn14) resulting in cardiomyocyte cell cycle reentry."
TNF affects F2R
| 1
TNF binds F2R. 1 / 1
| 1
sparser
"Results showed that dsVEGF-706 transfection restored the endothelial-like tube formation of HTR-8/SVneo cell that was inhibited by TNF-α."
TNF affects CUL5
| 1
TNF increases the amount of CUL5. 1 / 1
| 1
sparser
"Here, we found that TNFα-induced VACM-1 expression was reduced by an NF-κB inhibitor Bay11-7082 ( xref B,C)."
TNF affects CRY1
| 1
TNF inhibits CRY1. 1 / 1
| 1
sparser
"Additionally, exogenous TNF-α inhibited c-cbl protein level vice versa."
TNF affects CELSR2
1 |
1 |
biogrid
No evidence text available
TNF affects CACNA1B
| 1
| 1
sparser
"Inhibition of N-type VGCCs following TNFalpha incubation was associated with a decrease in CaV2.2 mRNA and reduced membrane localization of CaV2.2 immunoreactivity."
TNF affects ATP6AP2
| 1
| 1
sparser
"In summary, renal ischemia is associated with increased expression of PRR, NF-κB, the inflammatory cytokine TNF-α, and UACR."
TMEM63B affects RPN1
1 |
1 |
biogrid
No evidence text available
TMEM63B affects LGALS3BP
1 |
biogrid
No evidence text available
TLR4 affects IL1RN
| 1
| 1
sparser
"Prior research indicates an interaction between IL-1ra and TLR4 in a mouse model of arthritis, as TLR4 stimulation enhances arthritis severity in IL-1ra deficient mice whereas TLR4 deficiency is protective ( xref )."
TLR4 affects CALR
| 1
| 1
reach
"Calreticulin, HMGB1 and HSPs, and ATP then interact with the receptors CD91, Toll like receptor 4 (TLR4), and purinergic P2X7 receptors, respectively, which are present on the surface of DCs."
TIMP1 affects TRPC5
| 1
TIMP1 inhibits TRPC5. 1 / 1
| 1
sparser
"The data suggest that the dietary ω-3 fatty acids lino., DHA and EPA inhibit the TRPC5 homomeric and TRPC1-TRPC5 heteromeric channels."
TIMP1 affects KIT
| 1
TIMP1 inhibits KIT. 1 / 1
| 1
sparser
"In addition, TIMP-1 inhibited c-Kit shedding in CRC cells grown in the presence of exogenous TIMP-1."
TIMP1 affects ITGB1
| 1
| 1
reach
"In human melanoma cell lines, TIMP interacts with ITGB1 and CD63 and assists melanomagenesis and resistance to the cell death program."
TIMP1 affects EFEMP1
| 1
| 1
sparser
"Interaction between fibulin-3 and tissue inhibitor of metalloproteinases-3 (TIMP-3) was reported in vitro and the C-terminal fibulin module was shown to be responsible for this interaction ( xref )."
THBS1 affects S1PR1
| 1
| 1
sparser
"We then performed a ChIP assay to elucidate whether the interaction of mutant p53 with Rad21 affects its binding to the transcription factor-binding site of the S1PR1 and THBS1 genes."
THBS1 affects NOTCH1
| 1
| 1
reach
"TSP1 binds Notch1 by complexing with Jagged1 [XREF_BIBR] and/or Contactin [XREF_BIBR] to inhibit NPC differentiation into oligodendrocytes, thereby promoting their differentiation into nerve cells."
THBS1 affects IL6ST
| 1
| 1
sparser
"Among other seven genes, gene FCGR2A is associated with SLE, gene HSPA1A is involved in antigen-processing, genes THBS1 and IL6ST are associated with cytokine-cytokine receptor induced signaling, and genes GADD45A, THBS1, and CHEK1 are associated with p53 signaling pathway."
THBS1 affects CACNA2D1
| 1
reach
"Immunoprecipitation with anti-FLAG antibodies revealed that the SD2-alpha2delta-1 interaction was diminished in the presence of GBP (XREF_FIG) suggesting that GBP blocks TSP induced synapse formation by interfering with the interaction between alpha2delta-1 and TSP."
THBD affects FN1
| 1
| 1
reach
"Thrombomodulin promotes focal adhesion kinase activation and contributes to angiogenesis by binding to fibronectin."
ST3GAL1 affects LMBR1
1 |
1 |
biogrid
No evidence text available
ST3GAL1 affects ITGAV
1 |
1 |
biogrid
No evidence text available
SSTR2 affects C3
| 1
| 1
sparser
"It showed better binding affinity and more interaction with SSTR2 (Figure xref ), as it specifically interacts with SSTR2 at ASP 39 , VAL 106 , GLY 182 , ASN 186 , GLY 187 , TRP 188 and SER 285 by its LYS, ASN, TRP and CYS residues."
SPP1 affects LYVE1
| 1
| 1
sparser
"CD44 is a hyaluronic acid receptor that interacts with ligands such as collagens, osteopontin and matrix metalloproteases ( xref , xref )."
SPP1 affects KCNQ2
| 1
SPP1 inhibits KCNQ2. 1 / 1
| 1
sparser
"We were especially interested in studying patients with LOTS, since they show intrasaccadic decelerations and saccadic hypometria, which might reflect either premature inhibition of ipsilateral EBN by OPN or early discharge of contralateral IBN due to cFN dysfunction."
SPP1 affects KCNJ10
| 1
| 1
sparser
"We go on to discuss other potential biomarkers from MS serum and cerebrospinal fluid including Markers of neurodegeneration including neurofilament and GFAP, the monocyte macrophage marker CD163, the glial activation marker YKL-40, the B cell chemoattractant CXCL13, miRNA and mRNA, myelin reactive t cells, Kir4.1 antibodies, osteopontin, and microbiome associated lipopeptides."
SPP1 affects EFEMP1
| 1
| 1
sparser
"High concentrations of other soluble glycoproteins, such as osteopontin, fibulin-3 and vascular endothelial growth factor are independently associated with poor prognosis at baseline, although further research is required to ascertain any role outside of clinical trials."
SPP1 affects CACNG4
1 |
1 |
biogrid
No evidence text available
SORT1 affects MME
| 1
| 1
sparser
"In addition, sortilin also binds to other polypeptides such as neurotensin, sphingolipid activator protein and lipoprotein lipase and has been suggested to be involved in proper intracellular trafficking of these polypeptides [ xref – xref ]."
SORT1 affects IL1RN
| 1
| 1
reach
"Using chemical cross linking and the yeast two-hybrid system, we show that sortilin interacts with Glut4 and IRAP in the vesicular lumen."
SORT1 affects IL10
| 1
| 1
reach
"Our SPR analysis revealed that in addition to IL-6 and IFN-gamma, sortilin interacted with IFN-alpha, IL-10, IL-12 and IL-17A (XREF_FIG) but not with IL-1beta (XREF_FIG), suggesting that sortilin is not involved in IL-1beta secretion."
SORT1 affects CALR
| 1
| 1
sparser
"However, mitochondrial associations of SORT1, CALR, and RAB1A and T2DM-associated alterations of their protein levels in the MAM or mitochondria have been never reported in insulin-secreting or responsive tissues/cells."
SLC2A1 affects PDGFRA
| 1
SLC2A1 phosphorylates PDGFRA. 1 / 1
| 1
sparser
"CSE stimulated the phosphorylation of c-Src, EGFR, PDGFR, and Akt, which were inhibited by pretreatment with the inhibitor of PKCalpha (Gö6976 or Gö6983), c-Src (PP1), EGFR (AG1478), PDGFR (AG1296), or PI3K (LY294002)."
SLC2A1 affects INSR
| 1
| 1
reach
"However, both IR isoforms associated with GLUT1 or GLUT2."
SLC2A1 affects F2R
| 1
SLC2A1 activates F2R. 1 / 1
| 1
sparser
"Stimulatory effects were observed with physiological TH concentrations, although CSE did not activate TRs without TH."
SLC2A1 affects CXCR4
| 1
| 1
reach
"Specifically, VEGFA, CXCR4, GLUT1, HK2, and PFKFB3 were all associated with gained enhancers."
SLC2A1 affects CD44
| 1
| 1
sparser
"In order to function, this protein has to form heteromolecular complexes with CD98 and other protein such as Glut1 and CD44 [ xref – xref ]."
SLC20A1 affects RNF149
1 |
biogrid
No evidence text available
SIRPA affects IGF1R
| 1
SIRPA dephosphorylates IGF1R on tyrosine. 1 / 1
| 1
reach
"Regulation of insulin like growth factor I receptor dephosphorylation by SHPS-1 and the tyrosine phosphatase SHP-2."
SEL1L affects PTPRO
1 |
1 |
biogrid
No evidence text available
SEL1L affects PTPRE
1 |
1 |
biogrid
No evidence text available
SEL1L affects NTRK1
1 |
1 |
biogrid
No evidence text available
SEL1L affects ITGB1
1 |
1 |
biogrid
No evidence text available
SCARB2 affects CTSD
| 1
| 1
sparser
"The dispersed lysosomes associated with cathepsin D and LIMPII were not colocalized with early endosomes, and these vesicles were not inaccessible to the endocytosed anti-transferrin receptor antibody."
RPN1 affects NTRK1
1 |
1 |
biogrid
No evidence text available
RPN1 affects LGR4
1 |
1 |
biogrid
No evidence text available
RPN1 affects ERBB3
1 |
1 |
biogrid
No evidence text available
RPN1 affects DERL1
1 |
1 |
biogrid
No evidence text available
RPN1 affects CRY2
1 |
1 |
biogrid
No evidence text available
ROBO1 affects FN1
| 1
| 1
sparser
"Here, we find that NELL2 can interact with moderate affinity ( K D  = 14 µM) with the Robo1 FN1 domain."
RGMA affects FN1
| 1
| 1
reach
"Both netrin-1 and RGM bind to the FN III like domain of neogenin, but the binding affinity of RGM for neogenin is much higher than that of netrin-1 for neogenin XREF_BIBR, XREF_BIBR."
PTPRO affects HLA-A
1 |
1 |
biogrid
No evidence text available
PTPRO affects CALR
1 |
1 |
biogrid
No evidence text available
PTPRM affects FN1
| 1
| 1
sparser
"However, more recent studies now show that the MAM, Ig and FN domains are all required for dimerization interactions, with the MAM and Ig domains on one molecule of RPTPμ interacting with the FN1 and 2 domains of the other [ xref , xref ] ( xref )."
PTPRF affects IL1B
| 1
| 1
sparser
"As shown in xref , LAR was positively associated with IL-1β (r=0.41, p<0.001)."
PTPN6 affects CD84
| 1
| 1
sparser
"Nevertheless, studies involving yeast in a phospho-dependent condition failed to show any direct interaction between CD84 and SHP-1 or Csk ( xref )."
PTK2B affects ADAM8
| 1
| 1
reach
"These results demonstrate that ADAM8 and alpha 9 beta 1 interacts with Pyk2 to enhance signaling through paxillin."
PTGER4 affects IL10
| 1
| 1
reach
"These results identify a regulatory interaction between IL-10 and PGE2, dysregulation of which may drive aberrant Mphi activation and impaired host defense contributing to IBD pathogenesis."
PTGER3 affects OLR1
| 1
| 1
sparser
"These results suggest that down-regulation of EP3 expression by oxLDL is associated with impairment of EP3-mediated anti-inflammatory effects, and that EP3 receptor activity may exert a beneficial effect on atherosclerosis."
PTCH1 affects MME
| 1
| 1
sparser
"Here we report the structure of FGF-7 that has been solved to 3.1 A resolution by molecular replacement with the structure of a dual function chimera of FGF-7 and FGF-1 (FGF-7/1) which was resolved to 2.3 A. Comparison of the FGF-7 structure to that of FGF-1 and FGF-2 revealed the strongly conserved Calpha backbone among the three FGF polypeptides and the surface hydrophobic patch that forms the primary receptor-binding domain."
PRLR affects IL10
| 1
| 1
sparser
"In this work, IL-10 was neither released by untreated nor LPS-activated monocytes, but, in contrast, the binding of PRLr with a pAb anti-PRLr elicited IL-10 in activated monocytes after 48 h."
PLXNA4 affects INHBA
| 1
| 1
reach
"These were interactions between PLXNA4 and PLXNA4, between PLXNA4 and CDH13, between ADIPOR2 and ADSSL1, between ADIPOR2 and GSN, between INHBA and NIN, between MTUS2 and RLBP1L1, and between CXADR and PITRM1."
PLXNA3 affects INHBA
| 1
| 1
reach
"Sex differences in perceived impairment associated with EDF."
PLBD1 affects IL31RA
1 |
1 |
biogrid
No evidence text available
PKD1 affects MME
| 1
| 1
sparser
"Between the HF and HF-NEP groups, the variance explained by PC1 was primarily associated with Akkermansia ."
PKD1 affects IL10
| 1
| 1
sparser
"Furthermore, on gd14, we detected lower frequencies and cell numbers of peritoneal IL-10- and PC1-coexpressing B1a B cells as compared with the normal pregnancy situation indicating that a lack of this specific B1a B cell subset coexpressing IL-10 and PC1 is associated with fetal rejection."
OSM affects PTK2B
| 1
OSM activates PTK2B. 1 / 1
| 1
sparser
"These results suggest that, in marrow endothelium, activation of RAFTK by VEGF, VRP, OSM, and bFGF represents a new element in the signal transduction pathways used by these growth factors and likely acts to coordinate signaling from their surface receptors to the cytoskeleton, thereby modulating cell growth and function."
OLR1 affects PDGFRA
| 1
OLR1 phosphorylates PDGFRA. 1 / 1
| 1
sparser
"In vascular SMC or endothelial cells, oxLDL trigger a rapid and sustained tyrosine phosphorylation of EGFR or PDGFR, associated with the recruitment on the phosphorylated RTK of SH2 proteins such as PLCγ, PI3-K, SHP2 or src and the subsequent activation of downstream signaling pathways."
OLR1 affects F3
| 1
F3 binds OLR1. 1 / 1
| 1
sparser
"Through correlative immunogold cytochemistry (15-nm-diameter colloid) and gold-ligand cytochemistry (30-nm-diameter colloid), TF antigen (83%) and Ox-LDL (78%) were primarily associated with the membrane ruffles and microvilli."
OLR1 affects AGTR1
| 1
| 1
sparser
"Chimeric analysis showed that oxLDL-induced AT1 signaling events are mediated via interactions between the intracellular domain of LOX-1 and AT1 that activate AT1."
OLR1 affects ABCA1
| 1
OLR1 phosphorylates ABCA1. 1 / 1
| 1
sparser
"Overexpression of phosphatase domain of sEH abrogated the oxLDL-induced ABCA1 phosphorylation and further increased ABCA1 expression and cholesterol efflux, leading to the attenuation of oxLDL-induced cholesterol accumulation."
NTRK1 affects LMAN2
1 |
1 |
biogrid
No evidence text available
NTRK1 affects LGALS3BP
1 |
biogrid
No evidence text available
NTRK1 affects HLA-A
1 |
1 |
biogrid
No evidence text available
NTRK1 affects ENO1
1 |
1 |
biogrid
No evidence text available
NTRK1 affects CALR
1 |
1 |
biogrid
No evidence text available
NR3C2 affects IL1B
| 1
| 1
sparser
"Molecular sieve chromatography of TAT-IC-activated serum confirmed that 125I-IL-1 beta became bound to high Mr serum proteins."
NR3C2 affects FGL2
| 1
| 1
sparser
"SDS-PAGE and microsequence analyses revealed that the Mr 64,000 fgl2 monomer was assembled into two disulfide-linked oligomers of Mr 260,000 and 280,000."
NPY2R affects DMXL2
1 |
1 |
biogrid
No evidence text available
NLGN3 affects CTSD
1 |
1 |
biogrid
No evidence text available
NID1 affects LGALS3BP
1 |
1 |
hprd
No evidence text available
NALCN affects BST2
| 1
| 1
sparser
"To assess the cellular function of the P2X7 receptor in patients with active disease and healthy controls, we determined the non-selective pore formation induced by ATP by flow cytometry."
MME affects LRP1
| 1
| 1
sparser
"Immunohistochemical experiments revealed that the ApoE4-driven accumulation of Aβ in CA1 hippocampal neurons following inhibition of the Aβ-degrading enzyme neprilysin is associated with the up-regulation of Lrp1 in these neurons but that no changes occurred in the levels of the corresponding Apoer2 receptor."
MME affects KCNA1
| 1
MME inhibits KCNA1. 1 / 1
| 1
sparser
"Although less potent than α-DTX, ‘DaE’ polypeptides inhibit Kv1.1 channels with an IC 50 value in the range of 300 nM."
MME affects JMJD6
| 1
| 1
sparser
"Wolf, M.; Sahyoun, S. Protein kinase C and phosphatidylserine bind to Mr 1 I0,000/115,000 polypeptides enriched in cytoskeletal and postsynaptic density preparations."
MME affects INSR
| 1
| 1
sparser
"In the course of investigation with over 30 different cell types in our laboratory, only the characteristic polypeptides associated with the insulin receptor and the type I and II IGF receptor structures have been consistently detected and specifically labeled by affinity crosslinking methodology."
MME affects GHR
| 1
GHR binds MME. 1 / 1
| 1
sparser
"Interactions between the extracellular subdomain 2 of adjacent GHR polypeptides result in a 500-A2 contact interface, which has previously been suggested to stabilize the GH-(GHR)2 complex."
MME affects DNER
| 1
| 1
sparser
"Through the bromodomains, BET proteins specifically bind to polypeptides carrying acetylated lysine residues, including acetyl-histones [ xref ]."
MME affects CXCR4
| 1
| 1
sparser
"The selective binding of two synthetic antagonistic polypeptides TN140 and TN14003 to CXCR4 has been demonstrated in different cancer cell types and hence can be a promising moiety to target HIV infected cells xref , xref ."
MIF affects PTGER3
| 1
MIF activates PTGER3. 1 / 1
| 1
sparser
"Finally, MIF-induced COX 2-PGE(2) activation could be blocked by selective inhibitors of p44/p42 and p38 MAPKs."
MIF affects CD4
| 1
CD4 binds MIF. 1 / 1
| 1
sparser
"This corresponded with increased parasite burden in mice infected with wildtype versus mif-/- L. major late in infection, suggesting a reduction in the formation of long-lived effector CD4 T cells in the presence of Leishmania MIF [ xref ]."
M6PR affects ENO1
1 |
1 |
biogrid
No evidence text available
LRRC8B affects ANO6
1 |
1 |
biogrid
No evidence text available
LRRC8A affects ANO6
| 1
| 1
reach
"Development of this novel approach for lowering IOP will require future identification of the LRRC8 isomers expressed by normal and glaucomatous TM cells, and the mechanism (s) of interaction between LRRC8 and Ano6 in human TM cells."
LRP1 affects ITGAM
| 1
| 1
sparser
"Using purified proteins, LRP indeed associated with the alphaMbeta2 complex and the alphaM and alphaL I-domains (K(d, app) approximately 0.5 microM)."
LRP1 affects IL1RN
| 1
| 1
sparser
"Golgin-160 likely acts together with p115, another Golgi matrix protein that binds IRAP and LRP1, to sequester GSVs within unstimulated cells [ xref , xref , xref ]."
LRP1 affects IL1B
| 1
| 1
sparser
"IL-1RtI knockout mice were resistant to the APR induced by peripherally injected murine IL-1 beta, suggesting that it is not the interaction of endogenous IL-1 beta with IL-1RtII that induces an APR to LPS in these mice."
LMAN2 affects CACNA2D1
1 |
biogrid
No evidence text available
LIFR affects IL1RN
| 1
| 1
sparser
"Indeed, the latter condition is not associated with changes in serum LIFR or IL-1RA levels, but with a different profile of serum IL-6R production."
LGR4 affects CALR
1 |
1 |
biogrid
No evidence text available
LGALS3BP affects ITGAV
1 |
biogrid
No evidence text available
LGALS3BP affects ERBB3
1 |
biogrid
No evidence text available
LGALS3BP affects CUL5
1 |
1 |
biogrid
No evidence text available
KRT1 affects IL10
| 1
| 1
sparser
"Of note, mutations involving a basic region of K-RTA reduced the association of K-RTA with the IL-10 promoter."
KRT1 affects FN1
1 |
1 |
biogrid
No evidence text available
KCNQ2 affects FN1
| 1
| 1
sparser
"In contrast, there was only a slight effect of blocking β1 integrin on hNSPC binding to laminin or fibronectin."
KCNA2 affects KCNA4, and MME
| 1
KCNA2 binds KCNA4 and MME. 1 / 1
| 1
sparser
"Reciprocal coimmunoprecipitation experiments revealed that the beta-subunit polypeptides are associated with Kv1.2 and Kv1.4, but not Kv2.1, alpha-subunits."
ITGB1 affects KIT, and MME
| 1
ITGB1 binds KIT and MME. 1 / 1
| 1
sparser
"Results evidenced that differentiation process was associated with a significant reduction (p<0.05) in the expression of CD10 (from 92±5% to 0.1±0.09%), CD29 (from 98±2% to 0.7±0.5) and CD117 (from 15±2% to 0.7±0.05%), while only small differences were detected for the other tested antigens which showed a general decreased expression after differentiation had taken place ( xref and xref )."
ITGAM affects BMPR1A
| 1
ITGAM increases the amount of BMPR1A. 1 / 1
| 1
reach
"Since BMPR1a is not expressed by CD11b + cells (XREF_FIG) and is largely restricted to GFAP + cells (XREF_FIG) in the injured spinal cord, the increased infiltration of inflammatory cells is an indirect effect reflecting the defect in reactive gliosis."
INSR affects IL1B
| 1
| 1
sparser
"DM2 could potently modulate angiogenesis by the interaction of IL-1β with downstream insulin receptor and upstream androgen receptor."
INSR affects FCGR1A
| 1
| 1
sparser
"Free IGF-1 has a short half life, but at high levels it can bind to both the IGFR1 and insulin receptor (IR) to exert an anabolic effect."
INHBA affects ADIPOR2
| 1
| 1
reach
"These were interactions between PLXNA4 and PLXNA4, between PLXNA4 and CDH13, between ADIPOR2 and ADSSL1, between ADIPOR2 and GSN, between INHBA and NIN, between MTUS2 and RLBP1L1, and between CXADR and PITRM1."
IL6ST affects IL1B
| 1
| 1
reach
"Interleukin (IL) -6 functions downstream of IL-1beta and has unique signal pathways : classic- or trans-signaling via membrane bound IL-6R or soluble IL-6R (sIL-6R)."
IL6ST affects FN1
| 1
| 1
sparser
"Consistent with these observations, we demonstrated that the enhanced activation of STAT3 correlated with a FN adhesion-mediated binding of STAT3 to gp130."
IL1RN affects FGFR1
| 1
| 1
sparser
"CLCA4, ANXA9, GPR110, IL1RN, KLK12, PPARD, FLG and HSP90AAl are smoking dependent DEGs whereas GPR110, IL1RN and HSP90AAl are associated with lung cancer FLG is co-expressed with several query genes which are enriched in different cellular growth promoting pathways and FLG together with other genes plays key role in epidermal cell regulation."
IL1R1 affects ENO1
| 1
| 1
reach
"These results suggested that p80, which is generated from ErbB4 and translocates to the nuclei, interacts with alpha-enolase and inhibits neuregulin1 dependent ErbB4 mediated cell proliferation by impairing the c-myc gene transcription."
IL1B affects NALCN
| 1
IL1B activates NALCN. 1 / 1
| 1
sparser
"In addition, using slow voltage ramps we demonstrated that IL-1beta activates a non-selective cationic current (INSC) with a reversal potential of -38.8 +/- 1.8 mV."
IL1B affects GRIA1
| 1
| 1
sparser
"IL-1β affects various classical neurotransmitter systems, and there is evidence that the NMDA glutamate receptor and IL-1β interact with each other."
IL1B affects FGFR1
| 1
| 1
sparser
"In a mouse model of human breast cancer, fibroblast growth factor receptor 1-induced mammary tumorigenesis is associated with local production of IL-1β and can be blocked by treatment with an IL-1β neutralizing antibody (Reed et al., xref )."
IL1B affects CRY1
| 1
| 1
sparser
"Interestingly, although IL1β and IL-18 and their cellular receptors are related proteins, IL-18BP and IL-1βR displayed high specificity towards their targets: IL-18BP was not able to bind IL-1β and vice versa IL-1βR did not bind IL-18 [ xref ]."
IL1B affects CLIC1
| 1
IL1B increases the amount of CLIC1. 1 / 1
| 1
reach
"The intracellular chloride channel proteins CLIC1 and CLIC4 induce IL-1beta transcription and activate the NLRP3 inflammasome."
IL1B affects AQP1
| 1
| 1
sparser
"AQP1 deficiency is associated with a marked reduction of both lung IL-1β release and neutrophilic inflammation."
IL1B affects AGTR1
| 1
| 1
sparser
"In this study, we determined whether an interaction between IL-1β and AT1-R in the paraventricular nucleus (PVN) contributes to progression of HF."
IL15RA affects BST2
| 1
| 1
sparser
"More importantly, the increased mRNA expression of IL-15Rα was associated with an increased IL-15Rα cell-surface expression as determined by flow cytometry after 48h of incubation with IFN-α with a more than two-fold increase in mean fluorescence intensity (MFI) (, middle panel)."
IL10 affects PTPN6
| 1
IL10 phosphorylates PTPN6. 1 / 1
| 1
sparser
"IL-10 enhanced SHP-1 phosphorylation and CD40-induced ERK-1/2 phosphorylation but reduced the CD40-induced p38MAPK phosphorylation, whereas anti-IL-10 Ab exhibited reverse effects on these CD40-induced functions, identifying IL-10 as a crucial element in the SHP-1-MAPK feedback system."
IL10 affects HRH1
| 1
| 1
sparser
"The interactions of histamine with IL-10 are extremely important for understanding the involvement of histamine in the pathogenesis of allergic disease."
IL10 affects HLA-DQB1
| 1
| 1
sparser
"Moreover, with DR3-DQB1*0201 and DR4-DQB1*0302 haplotypes being the highest-susceptibility region, we analyzed the interaction between IL-10 polymorphisms and HLA-DQB1 genotypes."
IL10 affects CRY1
| 1
| 1
sparser
"We therefore, intended to see if therapeutic response to conventional anti- Leishmania drug, SAG is associated with the levels of immune-suppressive cytokine IL-10 or vice versa ."
IGF2R affects FN1
1 |
1 |
biogrid
No evidence text available
IFNAR1 affects FN1
| 1
| 1
sparser
"It could be that one of the two patches identified in this study interacts with one of IFNAR1-EC fibronectin domains while the other cytokine patch interacts with a second IFNAR1-EC fibronectin domain similar to what has been suggested by the model for the ternary complex that was based on cryo-EM (see below, ( xref ))."
HRH1 affects C3
| 1
C3 binds HRH1. 1 / 1
| 1
sparser
"Elevated C3a, C5a, and histamine have been associated with severe permeability deficits in dengue virus patients and in the development of DHF and DSS [ xref , xref , xref , xref , xref ]."
GRIA1 affects C3
| 1
| 1
sparser
"We identified one synonymous and two intronic GRIA1 SNPs associated with E . coli -ASP hypersensitivity on certain ALL subgroups."
FN1 affects RHO
| 1
FN1 activates RHO. 1 / 1
| 1
sparser
"Laminin and fibronectin differentially activate Rho family GTPases through discrete signaling pathways involving the α3β1 and α5β1 integrins ( xref )."
FN1 affects PDGFRB
| 1
FN1 phosphorylates PDGFRB. 1 / 1
| 1
sparser
"Cell adhesion to fibronectin induced α5β1-integrin-dependent phosphorylation of PDGFR-β in the absence of growth factor stimulation."
FN1 affects EDNRA
| 1
| 1
reach
"Therefore, we investigated the functional interaction between Ednra and fibronectin."
FN1 affects CXCR4
| 1
| 1
reach
"The stem cells are recruited to the site of ischemia where the ligands SDF-1, stem cell factor, and fibronectin are bound by their respective receptors CXCR4, C-Kit, and alpha-4 integrin on the stem cells."
FN1 affects CLIC1
1 |
1 |
biogrid
No evidence text available
FN1 affects ANTXR2
| 1
| 1
reach
"CMG-2 binds to collagen IV, laminin, and fibronectin but not to osteopontin, another extracellular matrix protein."
FN1 affects ACVR2A
| 1
| 1
sparser
"Both these entities are characterized by FN1-ACVR2A and ACVR2A-FN1 fusions [ xref ], which are present in at least 50% of synovial chondromatosis."
FCGR1A affects SCARB1
| 1
| 1
sparser
"Our findings that anti-SR-BI IgG blocks SR-A −/− microglial adhesion to fAβ-containing matrices by ∼40% while fucoidan blocks adhesion of both SR-A +/+ and SR-A −/− microglia by ∼75% ( Fig. 3a ) suggest that, assuming complete inhibition of SR-BI by anti-SR-BI IgG, scavenger-like receptors other than SR-A and SR-BI (e.g. RAGE, LRP, LOX-1, Fcγ-receptors ( Terry, 1999 )), also promote adhesion of microglia to fAβ-containing surfaces, and that unlike SR-A and SR-BI some of these other receptors are not inhibited by fucoidan."
FCGR1A affects DNER
| 1
FCGR1A inhibits DNER. 1 / 1
| 1
sparser
"Furthermore, 2PAPB-PreS–induced IgG inhibited Bet v 1–induced basophil activation in allergic patients and CD23-facilitated allergen presentation."
ENO1 affects EFEMP1
1 |
1 |
biogrid
No evidence text available
ENO1 affects EBP
1 |
1 |
biogrid
No evidence text available
ENO1 affects CUL5
1 |
1 |
biogrid
No evidence text available
ENO1 affects CD4
1 |
1 |
biogrid
No evidence text available
ENO1 affects ATP6AP2
1 |
1 |
biogrid
No evidence text available
EMB affects EDNRB
| 1
| 1
sparser
"Using isothermal titration calorimetry and surface plasmon resonance assays, we observed that EMB binds EtbR in a 1:1 ratio and thereby stimulates its DNA-binding activity."
CUL5 affects CTSD
1 |
1 |
biogrid
No evidence text available
CTSD affects CD4
1 |
1 |
hprd
No evidence text available
CHRNA7 affects BST2
| 1
| 1
sparser
"We assayed interaction of the amyloid beta peptide with SH-SY5Y cells using flow cytometry for the detection of the fluorescence signal of FITC-labelled A β 1–42 peptide after 5, 10, 15, and 30 min and after 1, 3, 18, and 24 h."
CD84 affects CD4
| 1
| 1
sparser
"To examine whether CD84 and Ly108 can directly mediate adhesion, we compared binding of pre-activated WT andSh2d1a −/− CD4 + T cells to recombinant CD84, Ly108, and ICAM-2."
CD44 affects CCL4
| 1
| 1
reach
"Although it has been shown that the proteoglycan moiety of CD44 binds MIP-1beta [118], it is still not known whether the CD44 present on hematopoietic progenitors actually functions as a proteoglycan and binds and/or presents growth factors to the hematopoietic or stromal cells on which it is found."
CD44 affects ADAM8
| 1
| 1
reach
"Similarly, in the angiogenic pathway, celecoxib treatment caused downregulation of IL-6 receptor, the ADAM8 (a disintegrin and metalloproteinase domain 8) gene, CD44 and integrin-beta binding proteins, and upregulation of neuropilin 2 (a VEGF receptor)."
CD4 affects CCL4
| 1
| 1
sparser
"When antigen-specific CD4 T cells interact with DC, CCL3, and CCL4 are released and this can guide CCR5-positive naïve CD8+T cells into tissues for activation ( xref )."
CCL4 affects PTPN6
| 1
CCL4 activates PTPN6. 1 / 1
| 1
sparser
"MIP-1β activates SHP1 and SHP2, and the tyrosine phosphatase inhibitor orthovanadate can markedly reduce the chemotactic response to MIP-1β ."
CASR affects IL1B, and TNF
| 1
TNF binds CASR and IL1B. 1 / 1
| 1
sparser
"The hypocalcemia of critically ill patients with burn injury or sepsis is associated with CASR gene upregulation by TNF-alpha and IL-1beta via kappaB elements, and by IL-6 via Stat1/3 and Sp1/3 elements in the CASR gene promoters, respectively."
CAPNS1 affects AGTRAP
1 |
1 |
biogrid
No evidence text available
CACNA1A affects ADAM8
| 1
| 1
sparser
"None of these antibodies inhibited the binding of human MAb MS2B6 to partially purified EA2B6."
BST2 affects KCNH2
| 1
BST2 inhibits KCNH2. 1 / 1
| 1
sparser
"To test for such a scenario, the population of K562 cells with degraded DNA (subG 1 population) was determined in dependence on hERG1 inhibition (0 or 1 µM E4031) by flow cytometry (propidium iodide Nicoletti staining) 24 h after irradiation with 0 or 5 Gy ( xref )."
BST2 affects ITGB3
| 1
BST2 activates ITGB3. 1 / 1
| 1
sparser
"As platelet granule secretion induced by agonist stimulation plays critical roles in the amplification of platelet signaling and subsequent activation and aggregation, we also measured platelet degranulation, represented by P-selectin expression and αIIbβ3 activation by flow cytometry."
BST2 affects ANTXR1
| 1
| 1
sparser
"Using this strategy, a monoclonal antibody, called AF334, was identified that, like SB5, was able to bind both mouse and human TEM8 by flow cytometry."
ADRA1D affects AGTR1, and IL10
| 1
| 1
sparser
"In contrast, a motif involving Adra1a , Il10 , and Agtr1 was associated with temporal dynamics that agreed well with predictions based on motif topology ( xref )."