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TNF affects TNFRSF1A
7 14 134 | 48 9
TNF binds TNFRSF1A.
67 | 48 9
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sparser
"To examine the association of A20 with the p55 TNF receptor complex and its effect on the recruitment of IKK1 to the receptor and to examine the effect of NEMO on IKK1 recruitment, HEK 293T cells were seeded on 10 cm plates (2 × 10 6 /plate)."
sparser
"Tumor necrosis factor binds to TNFR1 and TNR2."
sparser
"The difference in the signaling of the p60 form of the TNF receptor and Fas has been reported previously [17]."
reach
"In contrast, in cells exposed to both TNFalpha and AgNPs, the nanoparticles non specifically bind to TNFR1 and TNFalpha binds specifically with the same receptor, forming a TNFR1, TNFalpha, and AgNPs complex which then enters the cells by receptor mediated endocytosis."
sparser
"An exciting recent study of Gómez et al. [ xref ] showed that SpA interacts directly with TNFR1 and mimics TNF- α proinflammatory signaling by recruitment of the adaptor molecules the TNFR-associated death domain (TRADD), receptor-interacting protein (RIP), and TNFR-associated factor (TRAF) 2 to the receptor and the activation of the mitogen-activated protein kinases (MAPKs) p38 and c-Jun NH2-terminal kinases 1 and 2 (JNK1/2), which induces translocation and activation of transcriptional factor NF- κ B and mediates IL-8 gene expression."
sparser
"Using mice deficient in SP-A and MCs (SP-A −/− Kit W-sh/W-sh mice) engrafted with either TNF-α −/− or TNF receptor (TNF-R) −/− MCs, we found that augmented airway responses during M pneumoniae infection is a result of TNF-α interactions with MCs through the TNF-R and not MC-derived TNF-α."
sparser
"In the present study, binding activity of TNF-alpha to TNF-R1 and protein levels of IkappaB-alpha and nuclear transcription factor kappa B (NF-kappaB) p65 subunit in HeLa cells were measured using enzyme-linked immunosorbent assay (ELISA) and western-blot analysis."
sparser
"Moreover, since TNF-α can bind to two receptor subtypes, TNFR1 (p55-R) and TNF receptor 2 (p75-R), we next wish to examine which receptor is involved in SAH-induced apoptosis."
sparser
"Using surface plasmon resonance, we measured single-site binding affinities for the large receptor TNFR1 binding to its ligands TNFα (K D = 1.4 ± 0.4 nM) and lymphotoxin-α (K D = 50 ± 10 nM), and also for the small receptor Fn14 binding to TWEAK (K D = 70 ± 10 nM)."
sparser
"Tumor necrosis factor receptor 1 (TNFR1) is a membrane receptor able to bind TNF-alpha or TNF-beta."
sparser
"The possible reasons might be that the increased binding of Mt rh471 TNFalpha mainly to TNFR-p55 results in induction of apoptosis of SP cells, while Wt rhTNFalpha could bind to both TNFR-p55 and TNFR-p75 which would lead to NFkappaB activity, resulting in a discounted apoptotic effect."
sparser
"A slightly higher concentration of LTa was re- quired to inhibit 125I-TNF binding to p60:Fc (Ki ~ 650 pM)."
sparser
"Unlabeled TNF at a concentration of ~ 150 pM inhibited 50% of the maximum 125I-TNF binding (Ki) to p60:Fc."
sparser
"RIP3 can also execute cell death in a RIP1-independent manner following interaction of TNFα with TNFR1 via c-Jun N-terminal kinases (JNK) activation and ROS overproduction."
sparser
"VanArsdale and Ware 1994 have demonstrated the TNF-dependent association with TNFR1 of a serine protein kinase activity in U937 cells."
sparser
"RIPK1 rapidly associates with the TNF-activated TNFR1 signaling complex, and undergoes polyubiquitination with multiple linkages. xref , xref RIPK1 K63 polyubiquitination is critical for scaffolding the TAK/TAB kinase complex that phosphorylates IKKβ. xref Linear, methionine1-linked polyubiquitination of RIPK1 (effected by LUBAC) augments recruitment of IKKγ complexed to IKKα and IKKβ, which is then phosphorylated and thereby activated by transforming growth factor-β-activated kinase 1. xref Thus, deubiquitination of RIPK1 diminishes downstream NFκB activation."
sparser
"The Fas-Fas ligand interaction between macrophages and L929 cells increased the expression of Fas-associated death domain, and tumor necrosis factor-tumor necrosis factor receptor 1 interaction between macrophages and L929 cells increased the expression of tumor necrosis factor receptor-associated death domain in L929 cells."
sparser
"The denser fractions failed to show association of TNFR1 with caveolin-1 even after TNF treatment."
sparser
"Extracellular TNF-α binds and activates two main receptors, TNFR1 (p55) and TNFR2 (p75) that are responsible for mediating the intracellular cytokine activity."
sparser
"Pleural effusion as diagnosed by either chest X-ray or ultrasonography was associated with up-regulation of members of the NF-κB pathway such as TNFA and TNFR1 , but also with IL1RA , MIP1A and TLR1 and was inversely related to MIF and TLR7 ."
sparser
"Upon stimulation of TNF-R1 with TNF-α, death domain-containing protein TRADD (TNF receptor-associated death domain) becomes associated with the receptor and then recruits another death domain protein via the death domain/death domain binding."
sparser
"Upon binding to TNFα, which is a trimer, TNFR1 also forms a trimer that recruits TNFR1-associated death domain protein (TRADD) and triggers the sequential formation of two distinct complexes: complex I and II, which activate NF-κB and apoptosis, respectively ( xref ) xref ."
sparser
"Upon binding to TNF, TNFR1 binds the adaptor protein TRADD which recruits caspase-8 via FADD leading to apoptosis [8] ."
sparser
"Thus, upon TNF binding, TRADD binds the DD of TNFR1 and, in turn recruits RIP1."
sparser
"Interaction of TNF with TNFR2, but not TNFR1, is directly co-stimulatory to TCR-mediated T cell activation, as demonstrated by the effects of agonistic monoclonal antibodies to TNFR2 on human CD4 cells [ xref ]."
sparser
"Binding of TNF-α to its specific receptors TNFR1 and TNFR2, activation of different downstream mediators including NF-kB, c-jun N-terminal kinase (JNK), caspase cascade, phosphatidylinositide 3-kinase (PI3K)/Akt and reactive oxygen species (ROS) lead cells to inflammation and cell survival as well as cell death ( xref , xref )."
sparser
"Both TNFα (sTNF and tmTNF) can bind to both TNFR1 and TNFR2; sTNFα shows greater affinity for TNFR1 than TNFR2 causing inflammatory responses, leading to apoptosis, while tmTNFα acts mainly on TNFR2 leading to activation and cell survival."
sparser
"TNFα binds to two cognate receptors, TNFR1 and TNFR2 [ xref , xref ]."
sparser
"Although BCG induction of TNF can interact with both TNFR1 and TNFR2, it may induce TNF production at low levels, thereby possibly boosting the expansion of Tregs ( xref ), which can provide benefits for the treatment of autoimmune diseases."
sparser
"The soluble TNF-α can bind to TNFR1 and TNFR2 [28] , hence the expression pattern of both TNFR1 and TNFR2 in SH-SY5Y was analyzed in the presence/absence of TNF-α using real time PCR."
sparser
"The binding of TNFα and LTα to TNFR2 and TNFR1 have been well characterized structurally ( xref , xref )."
sparser
"We evaluated the inhibitory activity of compound 1 on the binding of TNFα to its receptors TNFRI and TNFRII using an ELISA assay."
sparser
"TNFα binds to two receptors, TNFR1 and TNFR2, which can form multimeric complexes upon ligand binding."
sparser
"TNF interacts with two plasma membrane receptors, TNF-R1 and TNF-R2."
sparser
"Our study shows that high sCD30, TNFalpha, IL6 and TNF-RI levels are associated with advanced disease or a worse prognostic score."
sparser
"Among the pathways in which KEGG is top-ranked and associated with diseases such as diabetes and inflammatory complication, the target proteins involved in metabolic pathways were adenosine deaminase (ADA), adenosine kinase (ADK), pancreatic alpha-amylase (AMY2A), fatty acid synthase (FASN), fructose-1,6-bisphosphatase 1 (FBP1), folate hydrolase 1 (FOLH1), leukotriene A-4 hydrolase (LTA4H), prostaglandin G/H synthase 2 (PTGS2), and sorbitol dehydrogenase (SORD); the target proteins involved in cancer-related pathways included GSK3 beta, inhibitor of nuclear factor kappa-B kinase subunit beta (IKBKB), IL6, peroxisome proliferators-activated receptors (PPAR), PTGS2, transforming growth factor beta-1 (TGFB1), cellular tumor antigen p53 (TP53), and vascular endothelial growth factor A (VEGFA); target proteins involved in the PI3K-Akt signaling pathway consisted of GSK3 beta, IKBKB, IL6, IRS1, spleen tyrosine kinase (SYK), toll-like receptor (TLR4), TP53, and VEGFA; the NF-kappa B signaling pathway interacted with proteins such as IKBK beta, interleukin-1 receptor-associated kinase 4 (IRAK-4), PTGS2, SYK, TLR4, TNF, and TNFRSF1A; mitogen-activated protein kinase (MAPK), IKBK beta, transforming growth factor beta-1 (TGFB1), TNF, TNFRSF1A, and TP53 interacted with the target protein involved in the MAPK signaling pathway; IKBKB and IL6 are involved in the Toll-like receptor signaling pathway, IRAK4, TLR4, and TNF; and the target proteins involved in the TNF signaling pathway included IL6, PTGS2, TNF, and TNFRSF1A. Previous studies have identified target proteins that were active in the mulberry leaves and involved in specific pathways."
sparser
"For those cytokines significantly associated with ALS, the ESs associated with the results of TNF-α, TNFR1 and VEGF were large, suggesting the potential usefulness of these cytokines as practical diagnostic biomarkers for ALS in the future."
sparser
"The antitumor activity of TNF-α is associated with death receptor-mediated programmed cell death, which is initiated by the binding of TNF-α to TNFR1 ( xref )."
sparser
"Tumor necrosis factor-alpha (TNF-α) binds to TNFR1 and TNFR2 and the TNFRs induce TNF-α production."
sparser
"TNF-TNFR1 binding activates the nuclear factor kappa-light-chain-enhancer of activated B cells (NF-κB), c-Jun amino-terminal kinase (JNK), the mitogen-activated protein kinases (MAPKs), and p38 [ xref ]."
reach
"Binding of TNF to TNFR1 induces the independent recruitment of the adaptor protein TRADD and the kinase RIPK1 to the receptor 's DD via homotypic DD interactions."
sparser
"The molecular mechanism of cell cycle arrest and apoptosis induced by QdNOs were explored. xref report that MEQ inhibited cell proliferation by arresting cells at the G2/M phase of the cell cycle. xref demonstrated that OLA induced cell cycle arrest to the S phase and dose-dependent apoptotic cell death in HepG2 cells through a caspase-9 and -3 dependent mitochondrial pathway. xref found that QCT induced apoptosis in HepG2 cells via activation of caspase, interaction of TNF-α and TNFR1 and modulation of the protein levels of Bid, Bax, and Bcl-2, involving the participation of p53, p38, and JNK."
reach
"In the network identified by GeneGo, conditions in the extracellular environment are sensed inside the cell via binding of TNF to TNF-R1, activating TNF-R1 [XREF_BIBR, XREF_BIBR]."
sparser
"TNF-α binds to its receptor TNFR-I in VSMC and EC and results in ROS production in a time and dose-dependent manner."
reach
"TNF interacts with two receptors, TNF-R1 and -R2."
reach
"In chronic inflammatory conditions, e.g. in IBD, interaction between TNF-alpha and TNFR1 can lead to stimulation of nuclear factor kappaB (NF-kappaB) in immune cells, which promotes transcription of genes, leading to cellular proliferation."
reach
"It has also been proposed that p70 can facilitate the binding of TNF to p55 (Tartaglia and Goeddel, 1992a)."
reach
"TNFalpha binds to TNFR1."
sparser
"TNF binding to TNFR1 triggers apoptosis through two pathways, by activation of the adaptor proteins TNFR1-associated death domain (TRADD) and Fas-associated death domain (FADD)."
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sparser
"After the binding of TNF-α to TNFR1, the activated receptor may interact with RIP1 via the death domains (DD), which may recruit cellular inhibitor of apoptosis proteins (cIAPs) (such as cIAP1 and cIAP2) and subsequently form the plasma membrane associated complex, leading to the activation of nuclear factor κB and mitogen-activated protein kinases (MAPKs)."
sparser
"The binding of TNFR1-Ig and TNFR2-Ig to bovine TNF-α was analyzed by enzyme-linked immunosorbent assay (ELISA)."
sparser
"TNF interacted with TYK2 and TNFRSF1A interacted with JAK2 , SOCS2 , SOCS1 , and STAT4."
| 2
sparser
"Then the cells were resuspended in essential medium at a concentration of 5 x lO'/ml and incubated for another 16 h at 37 C. Thereafter specific TNF binding to p60 and p80 was determined as described in section 2."
sparser
"Here we report that blockade of IL-1α/β and TNFα binding to IL-1R and TNFR1, respectively, reduced neuropathology in parietal cortex, hippocampus, and thalamus and improved outcome."
TNF-R32W binds TNFRSF1A. 1 / 1
| 1
reach
"Indeed, mutated R32W and S86T TNFalpha binds to TNFR1, whereas mutated D143N and A145R exclusively binds to TNFR2, suggesting that different subdomains of TNFalpha modulate its specificity towards TNFR1 or TNFR2 [31,32]."
TNF-S86T binds TNFRSF1A. 1 / 1
| 1
reach
"Indeed, mutated R32W and S86T TNFalpha binds to TNFR1, whereas mutated D143N and A145R exclusively binds to TNFR2, suggesting that different subdomains of TNFalpha modulate its specificity towards TNFR1 or TNFR2 [31,32]."
| 1
sparser
"In the present study, we showed that development of cardiac hypertrophy was closely associated with the up-regulation of myocardial TNFR1, ADAM-17 and TNF-α, indicating an important role of TNF–α signal system in cardiac hypertrophy."
TNF activates TNFRSF1A.
14 67 |
67 |
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10 |
bel
"Because RIP1 and TRAF2 are downstream effectors of the TNF receptor, it is possible that MNNG induces TNF through RIP1 and TRAF2 to trigger cell death. To investigate this possibility, we examined the sensitivity of TNFR1-/- MEF cells to MNNG treatment and found that it is comparable with that of WT MEF cells (Fig. 6c). As expected, TNFR1-/- MEF cells are resistant to TNF-induced cell death (Fig. 6c). These results exclude the possibility that RIP1 and TRAF2 function in the TNF signaling pathway in MNNG-treated cells."
bel
"The results support the following pathway, whereby TNF-alpha enhances expression of ICAM-1 in NHBE cells: TNF-alpha --> TNF-RI --> PC-PLC --> DAG --> PKC --> (NF-kappaB?) --> ICAM-1 mRNA --> ICAM-1 surface expression."
bel
"Consistent with the in vivo findings, p75 blockade resulted in significant reduction of TNF-induced VCAM-1 and E-selectin expression by 28 and 23%, respectively (P < 0.05), but had no significant effect on ICAM-1 (Fig. 4A). On the other hand, as with in vivo experiments, p55 blockade significantly decreased the expression of all adhesion molecules"
bel
"To determine the cytotoxic effects and the type of cell death facilitated by TNF in A549 cells, we treated cells with TNF and analyzed cell death based on morphological and biochemical assays. The death rate of A549 cells increased with increasing concentration of TNF (Fig. 1b), and cell death was characterized by cytoplasmic condensation and pyknotic nuclei without apoptotic body formation (Fig. 1c). Dose-dependent release of LDH into the culture medium was also noted (Fig. 1d); this is frequently encountered after necrotic cell death due to rupture of the cell membrane....Thus, TNF triggers necrotic rather than apoptotic cell death in A549 cells."
bel
"After being processed by such metalloproteinases as TNF-a-converting enzyme (TACE) between residues alanine76 and valine77, the soluble form of TNF-a of 157 amino acid residues (17 kDa) is released and mediates its biological activities through Type 1 and 2 TNF receptors (TNF-R1 also known as TNFRSF1A, CD120a and TNF-R2 also known as"
bel
"After being processed by such metalloproteinases as TNF-a-converting enzyme (TACE) between residues alanine76 and valine77, the soluble form of TNF-a of 157 amino acid residues (17 kDa) is released and mediates its biological activities through Type 1 and 2 TNF receptors (TNF-R1 also known as TNFRSF1A, CD120a and TNF-R2 also known as"
bel
"To investigate whether either or both TNF receptors control the expression of these cell adhesion molecules, HUVEC were stimulated from 0 to 10 h with human TNF-a binding to both receptor types, and with receptor type-specific agonists. The specific activation of TNF-R55 was achieved using three independent reagents: first the agonistic mAb htr-1, second the RaTNF-K55 agonistic antibodies, and third a recombinant mutant of human TNF-a, 32W/S86T-TNF-a (Trp32 Thr86 TNF), which binds exclusively to TNF-K55. TNF-R75 activation was achieved with RaTNF-R75 agonistic antibodies."
bel
"he binding of TNF to the cell surface receptor TNF-R1 causes the recruitment of the adapter protein TRADD to the cytoplasmic domain of the receptor. TRADD then serves to recruit additional signaling molecules, including FADD, TRAF2, and RIP1 (Chen and Goeddel 2002)."
bel
"TABLE 1. Cytokine/chemokines, their receptors, and functions."
bel
"he binding of TNF to the cell surface receptor TNF-R1 causes the recruitment of the adapter protein TRADD to the cytoplasmic domain of the receptor. TRADD then serves to recruit additional signaling molecules, including FADD, TRAF2, and RIP1 (Chen and Goeddel 2002)."
TNF bound to TNFRSF1A activates TNFRSF1A. 4 / 4
4 |
bel
"Tumor necrosis factor (TNF) alpha induced FLAP mRNA expression, FLAP promoter activity, and C/EBP alpha, delta, and epsilon binding to the proximal and distal promoter consensus sites."
bel
"Overexpression of NCOA-1, NCOA-2, and NCOA-3 enhanced E2-mediated gene expression by 3.17 +/- 0.51-, 2.33 +/- 0.8-, and 3.65 +/- 0.65-fold, respectively, and enhanced cell survival by suppressing tumor necrosis factor alpha (TNF-alpha)-induced cell death Overexpression of NCOA-1 and NCOA-3 exerted potent survival effects in breast carcinoma cells."
bel
"IAP, inhibitor of apoptosis; SMAC, second mitochondria-derived activator of caspase. In the death receptor pathway, ligands such as tumour-necrosis factor (TNF), FAS ligand (also known as CD95L), or TNF-related apoptosis-inducing ligand (TRAIL, also known as APO2 ligand (APO2L) or TNF ligand superfamily member 10 (TNFSF10)) interact with their respective death receptors (TNF receptor 1 (TNFR1), FAS (also known as CD95) and death receptor 4 (DR4, also known as TRAIL receptor 1 (TRAILR1)) or DR5 (also known as TRAILR2), respectively). These interactions ultimately lead to the recruitment of the FAS-associated death domain (FADD) and the activation of the protease caspase 8. Caspase 8 cleaves and activates caspase 3 and other downstream caspases, which results in a proteolytic cascade that gives rise to the cell death phenotype characterized by DNA fragmentation, chromatin condensation, cell shrinkage and membrane blebbing."
bel
"In contrast, the expression of cyclin D and E and the phosphorylation of Rb protein were not affected by ectopic expression of the drs gene, suggesting that an Rb-independent downregulation of cyclin A is involved in the suppression of anchorage-independent growth by means of the drs gene."
TNF increases the amount of TNFRSF1A.
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Transcriptionally active TNF increases the amount of TNFRSF1A. 7 / 7
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VEGFA affects NRP1
72 | 41 4
VEGFA binds NRP1.
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36 | 38 3
reach
"Binding of VEGF-A to neuropilin 1 is essential for proangiogenic activity."
reach
"VEGF-A binds to its receptors VEGFR1 (Flt-1), VEGFR2 (Flk-1), and coreceptors neuropilin 1 and 2."
sparser
"Nrp1 −/− hindbrains showed some defasciculation of these dorsolateral axons, but they were still clearly present in the mutant, suggesting that this are a suitable model to examine VEGFA isoform binding to NRP1."
sparser
"Here we report, novel promising small drug-like molecules disrupting the binding of VEGF-A₁₆₅ to NRP-1."
sparser
"Within the VEGF family, NRP1 binds VEGF-A, -B, -E and placenta growth factor (PlGF2), whereas NRP2 binds VEGF-A, -C, -D, and PlGF2 ( xref ; xref )."
reach
"It is of interest that we found fewer blood vessel capillaries in anti-Nrp-1B treated pups at day P5.5 (XREF_SUPPLEMENTARY), indicating that the formation of smaller blood vessels is impaired when VEGF-A binding to Nrp-1 is blocked, in line with previously reported effects of this antibody 24."
sparser
"To determine the effect of proteolytic activation of Sema3F on anti-angiogenic potency, we tested the ability of C-Sema to competitively block VEGF-A binding to neuropilin."
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sparser
"Experiments are performed both in the absence and presence of the soluble ligand vascular endothelial growth factor A (VEGFA), which binds to both VEGFR2 and NRP1."
sparser
"NRP1 is a coreceptor for the VEGF receptor (VEGFR), and VEGFA binding to the heterodimer of NRP1–VEGFR2 has enhanced VEGF signaling activity compared with binding of VEGFA to VEGFR1–VEGFR2."
sparser
"For both fibrosarcoma and melanoma cell lines, they demonstrated the formation of trans NRP1-VEGFA-VEGFR2 complexes between endothelial cells and NRP1-overexpressing tumor cells."
sparser
"Now, NRP1-VEGFA-VEGFR2 interactions in trans ( i.e. VEGFA bridging receptors across cells) are also coming into focus."
sparser
"These dimeric VEGF-A ligands then interact with VEGFR2 and NRP1 via separate ends of the peptide [ xref , xref ] ( xref )."
sparser
"Moreover, VEGF-A 165 b prevents the formation of neuropilin–VEGFR2 complexes by VEGF-A 165 a [ xref ]."
sparser
"VEGF-A 165 binding to VEGFR2 and neuropilin 1 induces a conformational change in VEGFR2 (REF. xref ), which is thought to be similar to that of the ERBB2 receptor xref , resulting in internal rotation of the intracellular domain."
sparser
"These results suggest that cooperative binding of VEGF-A to KDR and NRP-1 enhances KDR phosphorylation and its biological activities."
sparser
"VEGFA binding to both VEGFR2 and NRP1 on the same endothelial cell forms a cis NRP1-VEGFA-VEGFR2 complex; the stoichiometry is likely two VEGFR2s, two NRP1s and one VEGFA."
sparser
"Co-immunoprecipitation analysis was employed to examine whether DDA affects VEGF-A-induced association of the NRP-1-VEGFR2 complex."
sparser
"These studies suggest that VEGF-A interacts with NRP-1 and GIPC1 to regulate α6/β4-integrin, FAK, Src, PI3K/PDK1, LATS1 signaling to increase YAP1/∆Np63α accumulation to drive ECS cell survival, angiogenesis, and tumor formation."
sparser
"A co-immunoprecipitation analysis revealed that VEGF-A induced interactions between NRP1 and GIPC1, a scaffold protein, and complex formation between GIPC1 and Syx, a RhoGEF."
sparser
"These studies suggest that VEGF-A interacts with NRP-1 and GIPC1 to regulate α6/β4-integrin, FAK, Src, PI3K/PDK1, LATS1 signaling to increase YAP1/ΔNp63α accumulation to drive ECS cell survival, angiogenesis, and tumor formation."
sparser
"In support of this idea, Zhang et al. provide evidence that VEGFR1 and NRP1 bind VEGF-A and prevent excessive VEGFR2 signaling that would otherwise promote button-to-zipper transformation and thereby reduce chylomicron uptake into lacteals."
sparser
"These results mean that down-modulation of phactr-1 expression is not solely due to the VEGF-A 165 binding to NRP-1 and/or VEGF-R1."
sparser
"Formation of the Nrp1/mutant GlyRS complex antagonises Nrp1 interaction with one of its main natural ligands, vascular endothelial growth factor-A (VEGF-A), contributing to neurodegeneration."
sparser
"VEGF-A binds the b1 domain of NRP1 [ xref , xref , xref ] at exposed Tyr297 and Asp320 residue sidechains [ xref , xref , xref ], primarily via an exon 8a-encoded arginine residue (CDKPRR; critical arginine underlined) with homologous interacting residues in tuftsin (TKPR) [ xref , xref ] and peptide ATWLPRR [ xref , xref ]."
sparser
"VEGF121 binding to the NRP1 b1 domain is mediated by the exon 8-encoded domain, which carries a C-terminal arginine residue ( xref , xref )."
sparser
"The finding that heparin was able to partially restore VEGF-A 165 binding to other NRP1 b1 domain mutants, which caused substantial loss of binding in the absence of heparin suggests, however, that heparin is able to mediate binding interactions between the VEGF-A 165 C terminus and the b1 domain."
sparser
"The binding modes of both peptides were almost identical to those observed for Tuftsin and vascular endothelial growth factor A binding to the Nrp1 b1 domain."
sparser
"In this context, a human mAb (i.e., MNRP1685A) that blocks the binding of VEGF-A, VEGF-B, and PlGF to NRP-1 is currently under evaluation in clinical trials."
sparser
"However, ITGAV rs3816375, NRP1 rs200809375, and VEGFA rs3024987 were not associated with PFS ( P >0.05)."
sparser
"NRP1 can bind to semaphorins instead of VEGFA and this impairs endothelial cell migration ( xref )."
sparser
"If NRP1 binds to semaphorin instead of VEGFA then endothelial cell migration is inhibited ( xref )."
sparser
"However, recent biochemical studies demonstrated that Sema3A and VEGF-A bind to distinct domains of NRP1 [ xref , xref ] and induce NRP1 endocytosis through different pathways, suggesting that these NRP1 ligands function separately, rather than competitively."
sparser
"While previous in-vitro studies suggested competitive binding of Nrp1 by VEGF-A and Sema3A ( xref ; xref ; xref ), more recent in-vivo data suggests that this may not be the case."
sparser
"NRP1 and VEGFA interacted with APOE -ε4 to modify the association between ε4 and the final global cognition score."
sparser
"NRP1 and VEGFA interacted with APOE -ε4 on cross-sectional global cognition, so we analyzed VEGFA and NRP1 isoform-specific interactions with APOE -ε4 on this outcome, which showed that pro-angiogenic coding transcripts of VEGFA ( VEGFA-207, VEGFA-205 ) and several protein coding transcripts of NRP1 interacted with APOE -ε4 on global cognition ( xref )."
sparser
"In summary, we found that NRP1 and VEGFA interacted with APOE -ε4 on cognition."
sparser
"VEGF genes NRP1 and VEGFA interacted with APOE -ε4 on cognitive performance (p.fdr<0.05)."
sparser
"Tumor cell proliferation is induced by VEGF-A binding to NRP1 through a Ras-dependent mechanism. xref Adhesion to extracellular matrix and therefore motility and invasive capabilities are also affected by VEGF/NRP pathways."
sparser
"The library was tested for the ability to inhibit alkaline phosphatase (AP)-tagged VEGF-A binding to Nrp1 utilizing an in vitro plate-binding assay."
sparser
"In NRP, the region comprising tandem coagulation factor V/VIII type domains b1 and b2 specifically interacts with the C-terminus of VEGF-A 165 with the b1 domain of NRP playing the most important role in VEGF-A binding xref , xref ."
sparser
"Instead, it has been reported that NRP-1 binds VEGF-A to facilitate its interaction with VEGFR leading to more efficient stimulation of angiogenesis [ xref – xref ]."
VEGFA binds NRP1 and NRP2. 3 / 3
| 3
sparser
"VEGF-A 165 binding to NRP1 and NRP2 is important for migration of endothelial cells."
sparser
"Among many downstream factors of VEGFA [ xref , xref ], we found it was VEGFR2 rather than NRP1 and NRP2 associated with VEGFA in our study."
sparser
"However, this interaction alone is insufficient to explain the marked difference in potency of VEGF-A binding to Nrp1 and Nrp2, therefore other molecular determinants of this preferential binding must exist."
VEGFA-D320K binds NRP1-D320K. 1 / 1
| 1
reach
"However, VEGF binding by Nrp1 is required for arteriogenesis, as Nrp1 D320K VEGFA binding deficient mice display reduced blood flow recovery following ligation of the common femoral artery and induction of hindlimb ischemia."
VEGFA activates NRP1.
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VEGFA activates NRP1. 36 / 36
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IL1B affects IL1R1
5 1 34 | 32 5
IL1B binds IL1R1.
1 17 | 32 5
1 17 | 23 5
sparser
"These residues are poorly conserved in the deduced sequences encoding halibut and other teleost IL-1β [ xref – xref ], indicating the involvement of other amino acids in the interaction between fish IL-1β and IL-1Rs."
sparser
"Herein, we describe in vitro and in vivo nonclinical Investigational New Drug (IND)-enabling studies of EBI-005, a novel protein chimera of IL-1β and IL-1 receptor antagonist (IL-1Ra or anakinra) that potently binds IL-1R1 and blocks signaling."
sparser
"Of the three forms of IL-1, soluble type II IL-1R binds IL-1 beta with highest affinity and also selectively inhibits IL-1 beta activity."
sparser
"IL-1R1, which binds to both IL-1α and IL-1β, can be detected in a variety of cell types, whereas the IL-1R2 is found on the cell surface of type B lymphocytes, neutrophils and macrophage, and binds with IL-1β with higher affinity[ xref ]."
sparser
"In contrast, IL-1Ra acts as an antagonist of IL-1R1, preventing the binding of IL-1α and IL-1β with IL-1R1, respectively."
sparser
"Binding of IL-1R1 with IL-1α or IL-1β leads to subsequent recruitment of IL-1RAcP at the cell membrane [ xref ] and downstream cytosolic NF-κB activation."
sparser
"IL-1ra is a cytokine produced by monocytes, macrophages, and dendritic cells, which prevents the binding of IL-1α as well as IL-1β to IL-1R1 by competitively blocking IL-1RI receptors [ xref , xref ]."
sparser
"Both IL-1α and IL-1β bind to IL-1R1 and form an activating complex with the signaling chain IL-1R3."
sparser
"Both IL-1α and IL-1β bind to same IL-1R, and bone marrow-derived macrophages produced both IL-1α and IL-1β in response to LCWE in vitro ( xref )."
sparser
"Although both IL-1α and IL-1β can interact with IL-1R1 to induce downstream transcription of inflammatory genes, they show considerable differences in their localization, regulation, and function."
sparser
"Following binding of IL-1α or IL-1β to the type I IL-1R, a second protein, the IL-1 receptor accessory protein (AcP), is recruited to the complex (Greenfeder et al., 1995) ."
sparser
"Because mice deficient in the IL-1R cannot respond to IL-1, this result demonstrated that either IL-1α or IL-1β, both of which bind to the IL-1R, contributed to acute pathology after rVSV immunization."
sparser
"IL-1α and IL-1β bind to IL-1R1 complexed to the IL-1 receptor accessory protein and induce similar physiological effects."
sparser
"IL-1RI binds IL-1α, IL-1β and IL-1R antagonist (IL-1Ra)."
sparser
"Downstream of IL-1β activation, pharmacological inhibition of IL-1R with anakinra resulted in decreased TAA formation similar to IL-1β and IL-1R knockout mice."
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sparser
"A model of IL-1RAcP was calculated on the basis of alignment of primary sequence and secondary structure with IL-1R, and then modeled on the crystal structure of IL-1R bound to IL-1β ."
sparser
"Binding of IL-1β to the IL-1R1 induces formation of a signaling complex with the IL-1 receptor accessory protein, which are both members of the Toll-like receptor family of proteins [ xref , xref ]."
reach
"Previous studies reported that IL1beta and TNFalpha exert toxic effects by binding to their cognate receptors, IL1-R1 and TNFR1, respectively, triggering downstream signaling pathways that activate transcription factors, such as NFkappaB or AP1 which in turn lead to the production of NO and ROS."
reach
"In addition, IL-1beta interaction with IL-1R1 on ECs induces migration of the cells and tube formation, mainly via activation of p38-mitogen-activated protein kinase (MAPK) and MAPK activated protein kinase 2."
sparser
"Microglia-derived IL-1β also binds to IL-1R1 on the abluminal endothelial surface, causing BMEC to release signals that further increase microglial IL-1β production and also trigger IL-6 and prostaglandin synthesis."
sparser
"The ability of Vhp19 to interfere with IL-1β binding to IL-1R was assessed and compared to inhibition of IL-1β biological activity."
reach
"The affinity of IL-1R2 for IL-1beta is 10 -10 M, while its affinity for IL-1alpha is 100 times less at 10 -8 M. IL-1R1 binds IL-1alpha at 10 -10 M, but binds IL-1beta at 10 -9 M."
reach
"The major IL-1 family members are IL-1 alpha (IL-1alpha) and IL-1 beta (IL-1beta), both of which bind to the cell surface IL-1 Receptor 1 (IL-1R1) 16."
reach
"When IL-1beta binds to IL-1R, the RhoGDI becomes phosphorylated by mechanisms that are not entirely clear and releases Rac1-GDP."
sparser
"Once extracellular, IL-1α and mature IL-1β bind to the IL-1R1 to initiate downstream signalling in a range of cell types [ xref ]."
sparser
"Saturation binding analysis indicates an equilibrium dissociation constant (KD) of 350 pM for the binding of IL-1R-IgG to its ligand, IL-1 beta."
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sparser
"However, unexpectedly, the IL-1β-induced interaction between IL-1R and IL-1RAcP was unaffected in cells pretreated with brazilin ( Fig. 6 A, top left panel, fourth to sixth rows), indicating that down-regulation of IL-1β responsiveness by brazilin is independent of the heterodimerization between IL-1R and IL-1AcP."
sparser
"A model for the interaction of the extracellular parts of type I IL-1R and IL-1RAcP with IL-1β was proposed [68] ."
IL1A binds IL1B and IL1R1. 5 / 5
| 5
sparser
"Because mice deficient in the IL-1R cannot respond to IL-1, this result demonstrated that either IL-1a or IL-1b, both of which bind to the IL-1R, contributed to acute pathology after rVSV immunization."
sparser
"IL-1B and IL-1A are encoded by distinct genes and bind both to IL-1R1, found on nearly every cell and IL-1R2 ( xref )."
sparser
"Interleukin-1α (IL1α) and interleukin-1β (IL1β) both bind to IL-1R1 to initiate cell signaling."
sparser
"IL1R2 (2q11): Interleukin 1 receptor, type II binds IL1a, IL1b and IL1R1, inhibiting the activity of these ligands."
sparser
"The binding of IL-1alpha or IL-1beta to IL1R is an early step in IL-1 signal transduction and blocking this interaction may therefore be a useful target for the development of new drugs."
IL1B binds IL1R1 and IL1RN. 3 / 3
| 3
sparser
"On the mRNA level of MSC, we found IL1RN, which binds to IL1R on the cell surface with subsequent inhibition of the IL1beta signaling pathway, to be upregulated from a low basal level of expression upon stimulation with the PTC (318-fold) or IL1beta (107-fold) and to remain unchanged after stimulation with IL6, IL8, C3a and C5a in concentrations used in the “cocktail” ( xref )."
sparser
"The type I IL-1R binds IL-1α, IL-1β and the receptor antagonist IL-1Ra (reviewed in Ref. [65] )."
sparser
"In addition, IL-1R1 can be released into the extracellular space where, in its soluble form (sIL-1R1), it can also function as a soluble decoy receptor and prevent the binding of IL-1α, IL-1β, and IL-1Ra to membrane IL-1R1 ( xref )."
TLR4 binds IL1B and IL1R1. 1 / 1
| 1
sparser
"IL-1β or LPS binding to IL-1R or TLR4, respectively, results in the rapid association of the adaptor molecule Myd88 with the receptors and subsequent recruitment of the kinases IRAK1 and IRAK4. xref Activation and phosphorylation of IRAK kinases leads to the recruitment of the E3 ubiquitin ligase TRAF6 which undergoes K63-linked autoubiquitination and serves as a scaffold to recruit TAK1 and IKK kinases through binding to TAB2/3 and NEMO, respectively. xref TAK1 is subsequently activated and triggers IKK/NF-κB and mitogen-activated protein kinase/c-Jun N-terminal kinase activation. xref "
IL1B activates IL1R1.
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IL1B activates IL1R1. 15 / 15
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IL1B activates IL1R1. 5 / 5
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bel
"The IL-1 family of receptors is comprised of ten distinct but related gene products. The receptors are indicated by the term IL-1 receptor (IL-1R) followed by a numeral, assigned chronologically by discovery, for example, IL-1R1, IL-1R2, IL-1R3, etc. The ligand binding chain for IL-1α and IL-1β is IL-1R1 and the accessory chain is IL-1R3."
bel
"After IL-1 binds to IL-1RI, an IL-1RAcP is recruited to form a high affinity IL-1R1-IL-1RAcP heterodimeric receptor, which initiates the downstream signaling cascade."
bel
"After IL-1 binds to IL-1RI, an IL-1RAcP is recruited to form a high affinity IL-1R1-IL-1RAcP heterodimeric receptor, which initiates the downstream signaling cascade."
bel
"Furthermore, IL-18R at least partly shares the signal transducing system with IL-1R. Thus, the IL-18-IL-18R system has a striking similarity to the IL-1-IL-1R system. From entrez gene summary of IL1R1: The protein encoded by this gene is a cytokine receptor that belongs to the interleukin 1 receptor family. This protein is a receptor for interleukin alpha (IL1A), interleukin beta (IL1B), and interleukin 1 receptor, type I(IL1R1/IL1RA). It is an important mediator involved in many cytokine induced immune and inflammatory responses."
bel
"Furthermore, IL-18R at least partly shares the signal transducing system with IL-1R. Thus, the IL-18-IL-18R system has a striking similarity to the IL-1-IL-1R system. From entrez gene summary of IL1R1: The protein encoded by this gene is a cytokine receptor that belongs to the interleukin 1 receptor family. This protein is a receptor for interleukin alpha (IL1A), interleukin beta (IL1B), and interleukin 1 receptor, type I(IL1R1/IL1RA). It is an important mediator involved in many cytokine induced immune and inflammatory responses."
IL1B activates IL1R1 bound to IL1RAP. 2 / 2
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TGFB1 affects TGFBR1
15 2 1 24 | 24 9
TGFB1 binds TGFBR1.
1 2 1 12 | 17 5
1 2 1 12 | 17 5
sparser
"The non-GOI cytokine TGFB1 interacts with the aforementioned receptor TGFBR1, and BMI1."
sparser
"125I-TGF-beta1 affinity labeling analysis of cell-surface TGF-beta receptors reveals that CHO-K1 and CHO-677 cells exhibit low (<1) and high (>1) ratios of 125I-TGF-beta1 binding to TbetaR-II and TbetaR-I, respectively."
bel
"TGF-B1 is the most abundant and universally expressed isoform; most studies have either examined or been performed with exogenous TGF-B1. TGF-B is secreted into the extracellular matrix as a latent protein complex bound to a latency- associated protein and one of the four isoforms of latent TGF-B binding protein. Activation of TGF-B, which is required for biologic activity, occurs through poorly understood mechanisms likely involving proteolytic processing of the associated proteins and release of the TGF-B ligand. Once activated, the TGF-B ligands regulate cellular processes by binding to three high-affinity cell surface receptors: the type I TGF-B receptor (TBRI), type II TGF-B receptor (TBRII), and type III TGF-B receptor (TBRIII, also referred to as betaglycan). Where expressed, TBRIII is the most abundant TGF-B receptor and classically functions by binding the TGF-B ligand and transferring it to its signaling receptors, TBRI and TBRII.12 TBRI and TBRII contain serine/threonine protein kinases in their intracellular domains. TBRI initiates intracellular signaling by phosphorylating a family of transcription factors, the Smads. Smad2 and Smad3 are the receptor-activated Smads for TGF-B because they are phosphorylated by TBRI. Smad4 is a common partner for all of the receptor-activated Smads. Smad6 and Smad7 are inhibitory Smads that block the phosphorylation of Smad2 or Smad3, thus inhibiting TGF-B signaling. A general mechanism for TGF-B signaling has been elucidated (Fig 1).13,14 The TGF-B ligand either binds to TBRIII, which presents TGF-B to TBRII, or binds to TBRII directly. Once bound to TGF-B, TBRII recruits, binds, and transphosphorylates TBRI, thereby stimulating its protein kinase activity. The activated TBRI phosphorylates Smad2 or Smad3, which binds to Smad4. The resulting Smad complex translocates into the nucleus and interacts in a cell specific manner with transcription factors to regulate specifically the transcription of a multitude of TGF-B responsive genes"
sparser
"Taken together, our data indicate that TGF-beta1-induced interaction of TbetaRI and TbetaRII triggers dissociation of TAK1 from TbetaRI, and subsequently TAK1 is phosphorylated through TAB1-mediated autophosphorylation and not by the receptor kinase activity of TbetaRI."
sparser
"Upon activation TGF-β1 binds TGFBR2 to recruit TGFBR1 for direct phosphorylation and nuclear translocation of the transcription factors Smad2 and Smad3 (Smad2/3) to regulate target gene expression ( xref ; xref )."
sparser
"These results suggest that heparan sulfate negatively modulates TGF-beta1 responsiveness by decreasing the ratio of TGF-beta1 binding to TbetaR-II and TbetaR-I, facilitating caveolae/lipid-raft-mediated endocytosis and rapid degradation of TGF-beta1, thus diminishing non-lipid-raft-mediated endocytosis and signaling of TGF-beta1 in these epithelial cells."
sparser
"SPR Analysis of TGF-β1 Binding to TβR-I and TβR-II after Pre-incubation with GAG Derivatives."
sparser
"In Mv1Lu cells (which, like CHO-K1 cells, exhibit nystatin-inhibitable rapid degradation of receptor-bound 125I-TGF-beta1), treatment with heparitinase or a heparan sulfate biosynthesis inhibitor results in a change from a low (<1) to a high (>1) ratio of 125I-TGF-beta1 binding to TbetaR-II and TbetaR-I and enhanced TGF-beta1-induced transcriptional activation of PAI-1."
sparser
"While GAG derivatives alone did not bind to TβRs, increasing concentration and sulfation of the sHA derivatives led to a significantly decreased binding of TGF-β1 to TβR-II (Fig.  xref ) and TβR-I (Fig.  xref )."
sparser
"Mutation or polymorphism in TGFß pathway genes, TGFB1, TGFBR1 and TGFBR2 are associated with vascular disorders that have high stroke risk and inflammation such as Loeys Dietz syndrome xref , xref , Kawasaki disease xref , xref , and Moyamoya disease xref , xref ."
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sparser
"Thus, the transforming growth factor-beta (TGF-beta) receptor ALK5, which until now has only been associated with the biological functions of TGF-beta1 to TGF-beta3 proteins, mediates GDF11 signalling during embryogenesis."
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reach
"TGFbeta1 binds to the TGFbeta receptor II (TGFbetaRII) and ALK5 to activate Smad 2, 3, and 4."
signor
"TGF-beta signaling mediates a wide range of biological activities in development and disease. TGF-beta ligands signal through heterodimeric type I and type II receptors (TGF-beta receptor type I [TbetaRI, also known as ALK5 and TGFBR1] and TbetaRII) that are members of the serine/threonine kinase family."
reach
"TGF-beta1 binds to its type II receptor and then forms a complex with ALK5, which leads to activation of the intracellular signaling pathway mediated by Smad proteins XREF_BIBR XREF_BIBR XREF_BIBR XREF_BIBR."
sparser
"The binding activity of TGF-beta1 to TbetaRI was restored in all of the transfectants."
signor
"TGF-b ligands bind to TGF-b type II receptor (TbRII), which transphosphorylates and activates TGF-b type I receptor (TbRI)."
biogrid
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sparser
"sHA3 exhibited the strongest inhibitory effect and completely blocked binding of TGF-β1 to TβR-I at 20 µM D.U., while binding to TβR-II was not fully constrained even at concentrations above 200 µM D.U. sHA3."
reach
"It is likely that ADAP is indispensable for CD8 + T cells to (1) promote VLA-1 expression, which activates LAP-TGF-beta1 on neighboring immune cells to release active TGF-beta1; (2) produce autocrine or paracrine TGF-beta1, which then binds TbetaRI on CD8 + T cells to amplify the reciprocal TGF-beta1-integrin crosstalk."
reach
"TGF-beta1 binds to TGF-beta type I receptor, a transmembrane protein with Ser/Thr kinase domain, and then phosphorylates Smad2 and Smad3, which regulates the expression of downstream target genes and subsequently contributes to promoting EMT and metastasis of many cancer cells [XREF_BIBR]."
reach
"As for the polymeric HA derivatives the effect on TGF-beta1 binding to TbetaR-I was more pronounced compared to TbetaR-II."
sparser
"Interestingly, despite these changes in signaling, pERK was still associated with TGFBR1 following incubation with exogenous TGFβ1 ( xref )."
sparser
"TGFβ1-induced ALK5-Smad2/3 interaction and subsequent phosphorylation of Smad2/3 were impaired by RGMa knockdown."
sparser
"The P103 amelogenin-TGF-β1 complex binds to TGFBR1 to induce TGF-β1 signalling."
sparser
"In our experiments, however, both adult and fetal BMSC pellets did form cartilage matrix molecules following stimulation with TGFβ1 and the mRNA levels of ALK5 and ALK1 as well as their response to TGFβ1 was similar."
sparser
"Since both ALK1 and ALK5 can bind to TGF-β1 in the presence of TβRII, we believe that TGF-β1 signals through both ALK1-Smad5/Smad1 and ALK5-Smad2/Smad3 pathways in vivo ( Oh et al., 2000 )."
TGFB1 activates TGFBR1.
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TGFB1 activates TGFBR1. 9 / 9
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TGFB1 activates TGFBR1. 8 / 8
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bel
"Binding of TGF induces phosphorylation and activation of the TGF-beta R1 receptor by the TGF-beta R2 receptor."
bel
"the SGK promoter contains consensus DNA elements for Smad and Fast-1 binding (hatched boxes labeled SMAD 3/4 and Fast-1 in figure 2) that are activated by TGF-beta receptor signaling, This protein is recruited to the TGF-beta receptors through its interaction with the SMAD anchor for receptor activation (SARA) protein. In response to TGF-beta signal, this protein is phosphorylated by the TGF-beta receptors. The phosphorylation induces the dissociation of this protein with SARA and the association with the family member SMAD4. The association with SMAD4 is important for the translocation of this protein into the nucleus, where it binds to target promoters and forms a transcription repressor complex with other cofactors. This protein can also be phosphorylated by activin type 1 receptor kinase, and mediates the signal from the activin. Alternatively spliced transcript variants encoding the same protein have been observed."
bel
"the SGK promoter contains consensus DNA elements for Smad and Fast-1 binding (hatched boxes labeled SMAD 3/4 and Fast-1 in figure 2) that are activated by TGF-beta receptor signaling, This protein is recruited to the TGF-beta receptors through its interaction with the SMAD anchor for receptor activation (SARA) protein. In response to TGF-beta signal, this protein is phosphorylated by the TGF-beta receptors. The phosphorylation induces the dissociation of this protein with SARA and the association with the family member SMAD4. The association with SMAD4 is important for the translocation of this protein into the nucleus, where it binds to target promoters and forms a transcription repressor complex with other cofactors. This protein can also be phosphorylated by activin type 1 receptor kinase, and mediates the signal from the activin. Alternatively spliced transcript variants encoding the same protein have been observed."
bel
"\"Smad proteins mediate signaling by transforming growth factor-beta (TGF-beta) 1 superfamily members (1-3). Upon binding of TGF-beta to cell surface complexes of type I and type II receptor serine/threonine kinases, the type II receptor phosphorylates the type I receptor, which further phosphorylates the receptor-regulated (R-) Smads, Smad2 and Smad3 (3). Phosphorylated R-Smads oligomerize with the common mediator (Co) Smad4 and accumulate in the nucleus where they regulate gene expression.\""
bel
"TGF? binds to TGF? receptor II on T cells, which leads to the recruitment of TGF? receptor I to the complex and activation of cytoplasmic transcription factors SMAD2 and SMAD3. "
bel
"TGF? binds to TGF? receptor II on T cells, which leads to the recruitment of TGF? receptor I to the complex and activation of cytoplasmic transcription factors SMAD2 and SMAD3."
bel
"\"Smad proteins mediate signaling by transforming growth factor-beta (TGF-beta) 1 superfamily members (1-3). Upon binding of TGF-beta to cell surface complexes of type I and type II receptor serine/threonine kinases, the type II receptor phosphorylates the type I receptor, which further phosphorylates the receptor-regulated (R-) Smads, Smad2 and Smad3 (3). Phosphorylated R-Smads oligomerize with the common mediator (Co) Smad4 and accumulate in the nucleus where they regulate gene expression.\""
bel
"Further work revealed that TGF-R signaling (Massague and Wotton, 2000) was required for EMT, invasion in vitro, and metastasis in vivo,"
TGFB1 activates TGFBR1 bound to TGFBR2. 3 / 3
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TGFB1 bound to TGFBR1 activates TGFBR1. 1 / 1
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bel
"the SGK promoter contains consensus DNA elements for Smad and Fast-1 binding (hatched boxes labeled SMAD 3/4 and Fast-1 in figure 2) that are activated by TGF-beta receptor signaling, This protein is recruited to the TGF-beta receptors through its interaction with the SMAD anchor for receptor activation (SARA) protein. In response to TGF-beta signal, this protein is phosphorylated by the TGF-beta receptors. The phosphorylation induces the dissociation of this protein with SARA and the association with the family member SMAD4. The association with SMAD4 is important for the translocation of this protein into the nucleus, where it binds to target promoters and forms a transcription repressor complex with other cofactors. This protein can also be phosphorylated by activin type 1 receptor kinase, and mediates the signal from the activin. Alternatively spliced transcript variants encoding the same protein have been observed."
TGFB1 bound to TGFBR1 and TGFBR2 activates TGFBR1. 1 / 1
1 |
bel
"TGF-B1 is the most abundant and universally expressed isoform; most studies have either examined or been performed with exogenous TGF-B1. TGF-B is secreted into the extracellular matrix as a latent protein complex bound to a latency- associated protein and one of the four isoforms of latent TGF-B binding protein. Activation of TGF-B, which is required for biologic activity, occurs through poorly understood mechanisms likely involving proteolytic processing of the associated proteins and release of the TGF-B ligand. Once activated, the TGF-B ligands regulate cellular processes by binding to three high-affinity cell surface receptors: the type I TGF-B receptor (TBRI), type II TGF-B receptor (TBRII), and type III TGF-B receptor (TBRIII, also referred to as betaglycan). Where expressed, TBRIII is the most abundant TGF-B receptor and classically functions by binding the TGF-B ligand and transferring it to its signaling receptors, TBRI and TBRII.12 TBRI and TBRII contain serine/threonine protein kinases in their intracellular domains. TBRI initiates intracellular signaling by phosphorylating a family of transcription factors, the Smads. Smad2 and Smad3 are the receptor-activated Smads for TGF-B because they are phosphorylated by TBRI. Smad4 is a common partner for all of the receptor-activated Smads. Smad6 and Smad7 are inhibitory Smads that block the phosphorylation of Smad2 or Smad3, thus inhibiting TGF-B signaling. A general mechanism for TGF-B signaling has been elucidated (Fig 1).13,14 The TGF-B ligand either binds to TBRIII, which presents TGF-B to TBRII, or binds to TBRII directly. Once bound to TGF-B, TBRII recruits, binds, and transphosphorylates TBRI, thereby stimulating its protein kinase activity. The activated TBRI phosphorylates Smad2 or Smad3, which binds to Smad4. The resulting Smad complex translocates into the nucleus and interacts in a cell specific manner with transcription factors to regulate specifically the transcription of a multitude of TGF-B responsive genes"
TGFB1 phosphorylates TGFBR1.
2 | 7 4
TGFB1 phosphorylates TGFBR1. 10 / 10
2 | 4 4
bel
"As a control, we monitored phosphorylation of transfected TbetaRI, and observed phosphorylation of the receptor upon treatment of cells with TGFbeta1, as expected (Figure 6C, second from the top panel)."
bel
"Simplified schematic drawing of the TGF-?-Smad pathway. Binding of TGF-? to its type II receptor in concert with the type I receptor (A) leads to formation of a receptor complex and phosphorylation of the type I receptor. The type I receptor subsequently phosphorylates Smad2 or 3 (B), allowing this complex to associate with Smad4 and move into the nucleus (C). In the nucleus, the Smad complex associates with a transcription factor and this complex binds to specific enhancers in target genes (down-) regulating transcription (D). TNF is able to interfere with TGF-? signaling through the upregulation of the inhibitory Smad7 protein (E). Smad7 is capable of inhibiting the Smad2 and 3 phosphorylating process by competing with the receptor interaction but Smad7 also can dephosphorylate the complex. In addition, Smad7 itself is capable to upregulate TGF? gene expression. As described in the discussion, CSE is most likely capable to interfere with the Smad pathway although this is not yet fully elucidated. (F). Phosphorylated Smad3 is able to stimulate the transcription of the decorin gene (G)."
reach
"The binding of TGF-beta1 to a type II TGF-beta receptor causes the recruitment and phosphorylation of TGF-beta receptor type I, which in turn recruits and phosphorylates the receptor regulated Smad2/3."
sparser
"Sal B treatment attenuated TGF-β1-induced TβR-I and Smad2/3 phosphorylation and up-regulated Smad7 expression in HK-2 cells."
reach
"TGFbeta1 signaling is initiated by binding to the constitutively active type II serine threonine kinase receptor which, in turn, recruits and phosphorylates the type I receptor, the so called activin receptor like kinese 5, ALK5 32."
reach
"Interestingly, TGF-beta1 promoted TbetaRI phosphorylation in VSMCs, while AAT1 or AAT2 overexpression indeed downregulated the TGF-beta1-induced TbetaRI phosphorylation (XREF_FIG)."
sparser
"The SEB staphylococcal enterotoxin B XlYl motif (using single-letter code for amino acids), TGF-p transforming growth factor p needed for the binding of CD28 and (:?,A--! to B7 lig- ands, is not conserved in ICOS."
sparser
"Abbreviations CNS ECM CS-PGs GAG 3-D DRG RPTWB O-2A TGFb EGF TGFclcentral nervous system extracellular matrix chondroitin sulphateproteoglycans glycosaminoglycan three- dimensional dorsal root ganglion receptor-type protein tyrosine phos- phatase oligodendrocyte-type2 astrocyte transforming growth factor p epidermalgrowth factor transforming growth factor o Acknowledgements Work in the authors'own laboratory was supported by the Medical Research Council, the Wellcome Trust, the International Spinal Research Trust, and Action Research."
sparser
"TGF-β1 binds to the Type II receptor at the cell surface and recruits and phosphorylates the Type I receptor."
reach
"TGF-beta1 could significantly increase the phosphorylation of TbetaRI (P < 0.05), whereas SO 2 treatment markedly attenuated serine phosphorylation of TbetaRI (P < 0.05)."
TGFB1 phosphorylates TGFBR1 on glycine. 1 / 1
| 1
sparser
"TGF-beta1 induced in vivo phosphorylation of serine and threonine residues in the juxtamembrane domain of TbetaR-I in a region rich in glycine, serine and threonine residues (GS domain; Thr185, Thr186, Ser187, Ser189 and Ser191), and more N-terminal of this region (Ser165)."
TGFB1 phosphorylates TGFBR1 on serine. 1 / 1
| 1
sparser
"TGF-beta1 induced in vivo phosphorylation of serine and threonine residues in the juxtamembrane domain of TbetaR-I in a region rich in glycine, serine and threonine residues (GS domain; Thr185, Thr186, Ser187, Ser189 and Ser191), and more N-terminal of this region (Ser165)."
TGFB1 phosphorylates TGFBR1 on threonine. 1 / 1
| 1
sparser
"TGF-beta1 induced in vivo phosphorylation of serine and threonine residues in the juxtamembrane domain of TbetaR-I in a region rich in glycine, serine and threonine residues (GS domain; Thr185, Thr186, Ser187, Ser189 and Ser191), and more N-terminal of this region (Ser165)."
TGFB1 increases the amount of TGFBR1.
2 |
TGFB1 bound to TGFBR2 increases the amount of TGFBR1 bound to TGFBR2. 1 / 1
1 |
bel
"from Figure 1 - Fig 1. The transforming growth factor beta (TGF-b) signaling pathway. TGF-b binds type II TGF-b receptor (TbRII), directly or through TbRIII, inducing association of TbRII with TbRI. TbRII then phosphorylates and activates TbRI, which then phosphorylates Smad2 or Smad3. Phosphorylated Smad2 or Smad3 associates with Smad4 and they translocate into the nucleus, where they activate transcription of target genes. Smad7 inhibits TGF-b signaling by preventing the activation of Smad2 or Smad3 by TbRI."
TGFB1 bound to TGFBR2 and TGFBR3 increases the amount of TGFBR1 bound to TGFBR2. 1 / 1
1 |
bel
"from Figure 1 - Fig 1. The transforming growth factor beta (TGF-b) signaling pathway. TGF-b binds type II TGF-b receptor (TbRII), directly or through TbRIII, inducing association of TbRII with TbRI. TbRII then phosphorylates and activates TbRI, which then phosphorylates Smad2 or Smad3. Phosphorylated Smad2 or Smad3 associates with Smad4 and they translocate into the nucleus, where they activate transcription of target genes. Smad7 inhibits TGF-b signaling by preventing the activation of Smad2 or Smad3 by TbRI."
THBS1 affects CD47
16 | 40 8
THBS1 binds CD47.
8 | 40 8
8 | 27 7
reach
"Previous work XREF_BIBR has shown that TNF-alpha up-regulates the TSP1, CD36, and CD47 complex in cultured myoblasts and that the TSP1-CD36-CD47 was up-regulated in sIBM."
sparser
"TSP-1 and its potential membrane receptors, e.g. alphaIIbbeta3 integrin, CD36 and CD47, concomitantly associated with the actin cytoskeleton."
sparser
"We discussed herein the interactions of TSP-1 with well-known partners such as CD36, CD47, NO, and TGF β 1."
sparser
"Conversely, the Ca1 domain does not interact with the TSP-1 receptors CD36 and CD47, excluding their involvement in the potentiation of PDGF."
sparser
"The C-terminal domain of TSP1 binds the cell surface receptors CD36 (glycoprotein IV) and CD47 (Integrin Associated Protein, IAP, or Rh-related antigen), and both receptors have anti-angiogenic effects."
sparser
"Nevertheless, some putative side-effects of using TAX2 as an anti-cancer agent still need to be explored, particularly as TSP-1 interaction with CD47 and/or CD36 is also known to modulate platelet aggregation ( xref )."
sparser
"In endothelial cells, TSP-1 can bind to CD36 and CD47 through its type-1 repeats and carboxyl-terminal domain to inhibit cell proliferation and promote anti-angiogenic events xref , xref ."
sparser
"Through its original mechanism of action which supposes concomitant disruption of TSP-1:CD47 interaction and enhancement of CD36 activation by TSP-1, TAX2 may inhibit tumor progression while limiting many of the undesired side effects of broadly inhibiting important physiological functions of CD47."
sparser
"Inhibition of TSP-1 binding to either CD36 or CD47 using peptide mimics of the binding sites was investigated next."
sparser
"This might be of utmost importance for the contributions of endothelial cell-mediated angiogenesis following TSP-1 binding to CD36 and CD47."
sparser
"We studied two peptides interacting with CD36, CSVTCG and GDGV(dI)TRIR [11,16] and 4N1-1, one of the two CD47 binding sites of TSP-1 [15] ."
sparser
"These results indicate that that TSP-1 cell surface binding to CD36 and CD47 is essential for chemotaxis enhancement, and suggest that CD36 may be the more important of the TSP-1 receptors for enhancing chemotaxis to C5a."
sparser
"Because CD47 is known to associate laterally with other signaling receptors, including VEGFR2, and TSP1 binding to CD47 inhibits VEGFR2 signaling by dissociating CD47 xref , we hypothesized that interaction of CD47 with the CD14 complex might similarly modulate signal one."
sparser
"Finally, results show that TSP-1 utilizes cell surface receptors CD36 and CD47 to augment chemotaxis, but DBP does not bind to TSP-1, CD36 or CD47."
sparser
"Furthermore, this paper also reveals that DBP does not bind to TSP-1, CD36 or CD47 ( xref ) and that TSP-1 utilizes these cell surface receptors to augment chemotaxis to C5a ( xref – xref )."
sparser
"The COOH-terminal domain of TSP-1 binds to CD47, also known as integrin-associated protein [ xref ]."
sparser
"The COOH-terminal domain of TSP-1 binds to CD47, also known as integrin-associated protein. [ xref ] This domain also interacts with integrins such as β 1 and β v6 integrins and actively binds to proteoglycans allowing cell adhesion and spreading [ xref ]."
sparser
"TSP-1 binds CD47 to inhibit the release of interleukin (IL)-2 ."
sparser
"Ligation of CD47 by extracellular thrombospondin-1 is associated with down-regulation of IL-12 production by antigen-presenting cells [ xref ], and inhibits human naive T cell differentiation to Th1 cells but not to Th2 cells [ xref ]."
sparser
"These results unveil an autocrine mechanism of calreticulin-thrombospondin-1-CD47 interaction for the control of T cell motility and migration within three-dimensional extracellular matrix substrata."
sparser
"To date we have validated TSP1 antibodies that block TSP1 binding to CD47, CD47 antibodies that block TSP1 binding, and antisense approaches that suppress CD47 expression [ xref , xref – xref ]."
sparser
"TSP1 can also interact with integrin-bound fibrinogen, which may further increase clustering between IAP and αIIb/β3."
sparser
"These activities are mediated, at least in part, by interactions of TSP1 with CD47 and HSPGs on T cells (this study; xref )."
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reach
"This anti-angiogenic activity results in part from the ability of physiological concentrations of TSP1 binding to CD47 to control NO signaling, which is necessary for signaling by several pro angiogenic factors [XREF_BIBR]."
sparser
"Otherwise, TSP-1 binding to CD47 also inhibits differentiation of naïve T cells into Th1 ( xref ), whereas Tregs formation is induced by promoting Foxp3 transcription factor expression ( xref ; xref )."
reach
"We have previously identified TAX2 peptide as an orthosteric antagonist for thrombospondin-1 (TSP-1) interaction with the cell-surface receptor CD47."
reach
"56 It would be interesting to investigate the effect of CD47 blockade on the antitumour capabilities of T cells, as previous studies have suggested that CD47 negatively regulates the differentiation of Th1 CD4 + T cells 195 and interacts with TSP-1 to inhibit T cell proliferation."
reach
"For example, B6H12 inhibits binding of TSP1 to human CD47, and TSP1 binding to CD47 inhibits NO signaling in vascular endothelial cells."
sparser
"Thus, we sought to identify an innovative selective antagonist for TSP-1:CD47 interaction."
sparser
"TSP1 binding to CD47 has global functional consequences by inhibiting endothelial nitric oxide (NO) production, controlling vascular tone, and maintaining systemic hemodynamics and cardiac dynamics in stressful conditions [ xref , xref , xref , xref ]."
reach
"The rule for TSP1 binding to CD47 is illustrated in Figure XREF_FIG."
reach
"The binding of CD47 to either SIRPalpha or TSP1 provides two anticancer strategies."
sparser
"Binding of CD47 to other ligands such as integrins, TSP-1 and TSP-1-derived peptides, also involves the IgV domain of CD47 [ xref ]."
sparser
"In addition, TSP-1 can also bind to different integrins, CD47 and heparan sulfated proteoglycans [ xref ]."
| 10
sparser
"TSP-1 and SIRP-α bind CD47 IgV loop xref and TSP-1 can inhibit SIRP-α-Fc binding to CD47 expressing-Jurkat cells xref ."
sparser
"The binding of CD47 to either SIRPα or TSP1 provides two anticancer strategies."
sparser
"Given recent insights into the physiological functions of CD47, potential side effects of therapeutic CD47-antibodies such as B6H12, which inhibits both CD47-SIRP and CD47-TSP1 interactions, include altered blood pressure [ xref ], hemolytic anemia, and prothrombotic or antithrombotic activities [ xref , xref ]."
sparser
"Interestingly, both TSP-1 and SIRPα are interacting with CD47 during synaptogenesis xref , xref , xref , xref , which means that other mechanisms appear to be involved in CD47-dependent regulation of the type of nerve fiber growth investigated in the present study."
sparser
"Notably, the widely used CD47 blocking antibody B6H12 inhibits binding of both SIRPα and TSP1 to cell surface CD47 ( xref )."
sparser
"However, CD47 modified nanoparticles showed a prominent anti-phagocytosis property in M1 cells that may in part be due to the complex signalling interactions of CD47 with SIRPα and TSP-1."
sparser
"One approach to avoid these shortcomings is to identify and develop small molecule molecular probes and pretherapeutic agents that would (1) selectively target SIRPα or TSP1 interactions with CD47, (2) provide a route to optimize pharmacokinetics, reduce on-target toxicity and maximize tissue penetration, and (3) allow more flexible routes of administration."
sparser
"This data is consistent with competitive binding of TSP1 and SIRPα to a single site on CD47, steric inhibition of binding to distinct but proximal sites, or allosteric inhibition ( xref )."
sparser
"Thus, we propose that treatment of tumor-bearing animals with CD47 blocking antibodies, which are known to inhibit both SIRPα and TSP1 binding to CD47, could directly modulate adaptive as well as innate anti-tumor immunity."
sparser
"Indeed, CD47 antibody targeting may affect NO pathway modulation and subsequent angiogenesis regulation, since a commonly used CD47-blocking antibody (clone B6H12) was previously shown to concomitantly disrupt both TSP-1:CD47 and CD47:SIRPα interactions ( xref )."
THBS1 binds VEGFA and CD47. 2 / 2
| 2
sparser
"The increase in capillarity may be associated by changes in the interaction between VEGF-A, TSP-1, and CD47."
sparser
"Additional studies are required to investigate the signaling mechanism of (−)-epicatechin on the VEGF-A-TSP-1-CD47 interaction as well as determine the prolonged effects upon cessation."
THBS1 binds THBS1 and CD47. 1 / 1
| 1
sparser
"Some studies demonstrate increased angiogenesis associated with TSP-1 overexpression (reviewed in [ xref ]), which could be due to the TSP1-dependent CD47 ligation, which may increase the motility and invasiveness of the tumor cells [ xref ]."
THBS1 binds CD47 and CD47. 1 / 1
| 1
reach
"In chondrocytes, a TSP, CD47, and IAP complex may associate with alpha5beta1 integrin to modulate alterations in integrin affinity and avidity state critical in the mechanotransduction process."
THBS1 activates CD47.
8 |
THBS1 activates CD47. 8 / 8
8 |
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IL15 affects IL15RA
1 1 34 | 11 17
IL15 binds IL15RA.
18 | 10 9
16 | 10 9
sparser
"Among AA women only, IL15 rs10833 and IL15RA rs2296135 were associated with ER positive tumors, and IL12RB1 rs375947, IL15 rs10833 and TGFB1 rs1800469 were associated with ER negative tumors."
sparser
"Only among AA women, IL15 rs10833 and IL15RA rs2296135 were associated with ER-positive tumors, and IL12RB1 rs375947, IL15 rs10833 and TGFB1 rs1800469 were associated with ER-negative tumors."
sparser
"Comparison of these observations with ours therefore suggests that the increase in IL-15 activity and IL-15 binding provided by the hinge region C-terminal to IL-15Rα-sushi domain is mainly due to contacts made by Pro67 (or Pro68 in mouse) with IL-15, rather than to those engaged by His71 (or His72 in mouse)."
sparser
"Indeed, the of the IL-2·IL-2Rα interaction resembles that of the interaction of IL-15 with the IL-15Rα-sushi domain, lacking the 13-aa peptide encoded by exon 3, as determined here and previously."
sparser
"Interestingly, IL-15IL-15Rα complex bound to IL-2Rβ with a K D of 3 nM ( xref right), an affinity increase of approximately 150-fold over free IL-15."
sparser
"Neu (P=0.014, P=0.005), possibly due to the effect of endogenous IL-15 and IL-15Rα interacting with the transferred receptor or cytokine, respectively."
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reach
"IL-15R-alpha binds IL-15 with high affinity and functions as a chaperone to facilitate the binding of IL-15 to the signal transducing subunits of the receptor complex : IL-2/15R-beta and the gamma chain."
reach
"In an orthotopic PDX model, animals receiving chemoimmunotherapy with an anti-GD2 antibody, GM-CSF, and a soluble IL-15 and IL-15Ralpha complex had greater tumor regression than did those receiving chemotherapy alone (P = 0.012) or combined with anti-GD2 antibody and GM-CSF with (P = 0.016) or without IL-2 (P = 0.035)."
reach
"Formation of a quaternary complex of IL-2Rbeta and gammac hetero-dimers on one cell with an IL-15 and IL-15Ralpha complex on another cell could be more susceptible to steric hindrance by sgammac proteins than the assembly of a functional IL-2Ralpha, beta and gammac signaling complex on the same cell."
reach
"Additionally, binding of IL-15 to IL-15Ralpha induced NF-kappaB activation via phosphorylation and subsequent degradation of the inhibitory subunit I-kappaBalpha."
reach
"Treatment of aged mice with IL-15 and IL-15Ralpha complexes induces a massive expansion of immature NK cells that do not restore resistance to mousepox."
reach
"First, we established an ELISA using as a capture a previously described peptide which specifically binds to IL-15Ralpha and displaces IL-15 and IL-15Ralpha binding in a dose dependent manner [XREF_BIBR]."
reach
"Gluten peptides, the causative agent of CD in genetically susceptible individuals, particularly p31-43, may also mediate inflammatory processes XREF_BIBR, XREF_BIBR, alter the traffic of the vesicular compartment resulting in increased epidermal growth factor receptor (EFGR) and the IL-15 and IL-15Ralpha complex expression and activation XREF_BIBR, that altogether contribute to disregulation of tissue remodelling and mucosal damage."
reach
"The preferential response of effector CD8 + T cells to IL-2 and mAb but not IL-15 and sIL-15Ralpha complexes was contrary to our expectation."
reach
"Approaches that utilize soluble IL-15 and IL-15Ralpha complexes exhibit enhanced in vivo effects compared to IL-15 alone."
sparser
"The interaction of IL-15 with IL-15RA on T cells may also influence CTL avidity maturation."
sparser
"Unlike IL-2, that requires all three receptor subunits for high affinity binding, IL-15 is highly bound by IL-15Rα alone."
sparser
"Figure  xref shows that only in mammalian IL-2 the patch 1 residues markedly differ from IL-2/15/15L family consensus, and indeed it was found that in teleost fish both IL-2 and IL-15 can bind IL-15Rα (Wen et al. xref )."
sparser
"There were different kinetics of intracellular trafficking of IL-15 and IL-15Rα, and ARF6 specifically interacted with IL-15Rα and facilitated IL-15 exocytosis."
2 |
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IL15 activates IL15RA.
1 1 16 | 8
IL15 activates IL15RA. 25 / 25
1 16 | 8
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reach
"Despite shorter culture conditions of 16 hours, we observed that CD8+ T cells transfected with IL-15RA and treated with IL-15 demonstrate higher% viability in the presence of dexamethasone compared to similarly treated no RNA transfected cells (XREF_FIG)."
reach
"The coordinated upregulation of surface IL-15 and IL-15Ralpha during EAE supported the possible requirement of IL-15Ralpha for IL-15 elaboration."
reach
"IL-15 induces signaling by both cis- and trans-presentation of IL-15 and IL-15Ralpha to CD122 and gammac."
reach
"By contrast, IL-15 induced only minimal CD8 + T cell proliferation in IL-15Ralpha -/ - mice (XREF_FIG C)."
signor
"Interleukin-15 specificity and high affinity binding are conferred by the IL-5-specific but nonsignaling IL-15R alpha subunit, which is structurally similar (but not homologous) to the alpha receptor subunit of IL-2"
reach
"In contrast, the culture of F15R-Kit with IL-15 was associated with the appearance of IL-15Ralpha in the endosomal fractions (fractions 6 and 7), supporting the view that IL-15 induces the internalization of IL-15Ralpha."
reach
"The key distinctions between these two cytokines are (a) IL-15 exhibits an affinity for its private alpha receptor subunit that is 400-fold higher than that of IL-2 and (b) IL-15 primarily signals in trans, with monocytes or dendritic cells (DCs) presenting IL-15Ralpha to NK cells or T cells rather than the conventional cis activation mechanism favored by IL-2."
reach
"In this study, T cells that specifically demonstrated high levels of IL-15RA expression were treated with IL-15 prior to transfer into leukemia bearing mice."
reach
"In addition, increased levels of IL-15 supported strong pStat5 induction by WT, but not IL-15Ralpha -/-, CD8 + activated T cells, indicating that high IL-15 does not overcome the loss of cis expressed IL-15Ralpha (XREF_FIG)."
IL15 activates IL15RA. 1 / 1
1 |
bel
"IL-15 is a common gamma chain cytokine sharing overlapping signaling and biological properties with IL-2 as a result of their mutual usage of the IL-2/15b and common gamma chain (gc) receptor subunits (7,8)."
IL15 phosphorylates IL15RA.
| 1
IL15 phosphorylates IL15RA. 1 / 1
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sparser
"Treatment with IL-15 induced tyrosine phosphorylation of both Axl and IL-15Rα , and activation of the phosphatidylinositol-3 kinase (PI-3K)-Akt pathway, indicative of the functional nature of this heterologous receptor pairing."
SPP1 affects CD44
20 | 39 3
SPP1 binds CD44.
10 | 39 3
10 | 39 3
sparser
"Two OPN receptors, αvβ3 and CD44 have been especially associated with OPN-induced cell migration ( xref , xref , xref , xref )."
sparser
"Our preliminary studies further suggest that OPN-mediated effects may occur via OPN-CD44 and OPN-αvβ3 interactions (putative OPN-receptors), and/or via MZF1 regulation of TGF-β mRNA (a zinc finger transcription factor) (Mi Z, personal communications)."
sparser
"To illustrate the usefulness of our data mining approach, we utilized the program output to generate a hypothesis for a biological function of CD44 interaction with osteopontin (OPN) and laminin in axon outgrowth of CNS neurons."
sparser
"The principal ligand for CD44 is hyaluronic acid (HA) but other extracellular-matrix (ECM) proteins including serglycin, collagen, fibronectin, chondroitin sulfate, laminin, and OPN also bind CD44."
sparser
"Although other extracellular matrix components such as osteopontin, collagens, growth factors, and metalloproteinases can bind to CD44, hyaluronan (HA) is the most common and immediate ligand for CD44."
sparser
"g, gp100, LAM cells also express estrogen and progesterone receptors [ xref ], vascular endothelial growth factor receptor 3 (VEGF-D3) [ xref - xref ], chemokine receptors [ xref , xref ], CD44v6, a glycoprotein associated with metastasis [ xref ], osteopontin, a regulator of CD44 [ xref ], and matrix metalloproteinases (MMP) [ xref ]."
sparser
"Co-immunoprecipitation analysis was performed to check OPN-induced CD44 and c-Met interaction."
sparser
"We demonstrated that in the absence of OPN, CD44 and c-Met interact."
sparser
"These results provide evidence that diffuse, concussive brain trauma induces a postinjury interaction between MMP9, OPN and CD44 which mediates synaptic plasticity and reinnervation within the OB."
sparser
"In conclusion, increased expression of inflammation-related genes of renal tubular cells induced by crystal formation and deposition could induce monocyte-macrophage migration and phagocytosis via the interaction of CD44 with osteopontin and fibronectin."
sparser
"05) (Figure 5D), and we hypothesized that this was due to CD44 receptor-ligand interactions with lung-derived SELL and/or OPN."
sparser
"Conclusion APS combined with DDP could significantly inhibit the growth and metastasis of Lewis lung cancer cells, which might be associated with the reduced expression of CD44, CD62P and OPN."
sparser
"The interaction between CD44 and its ligands, hyaluronan and osteopontin, mediates pressure-induced fibrotic responses in renal tubular cells at the early stage xref ."
sparser
"CD44 and its activator ligands, hyaluronan and osteopontin, interact with each other in a signaling network to launch with various tumorigenic processes involving several growth regulation, survival, differentiation and motility."
sparser
"The specific, dose and integrin-dependent binding of osteopontin to CD44 is implicated with roles in adhesion, migration, modulation of cytokine secretion, anti-apoptotic signaling and tumor invasion ( xref )."
sparser
"The interactions between OPN, integrins, and CD44 are involved in adhesion, migration, homing, survival and proliferation of tumor, and stromal cells (reviewed in Wai & Kuo, 2008 )."
sparser
"Our studies also demonstrate that HCV-induced OPN interacts with integrin αVβ3 as well as CD44 at the cell surface and induces signaling cascade through phosphorylation/activation of FAK, Akt and Src."
sparser
"Binding of OPN to integrin and CD44 receptors regulates signalling cascades that affect processes such as adhesion, migration, invasion, chemotaxis and cell survival."
sparser
"In target cells, OPN binds to a high number of integrins and CD44 to promote profibrogenic and inflammatory actions( xref )."
sparser
"Bone-derived OPN interacts with CD44 and RGD-dependent integrins to enhance migration."
sparser
"siRNA-mediated down-regulation of OPN or treatment with neutralizing antibody against OPN blocked OPN binding to its receptors, such as CD44 and integrins, and significantly inhibited the activation of OPN-mediated survival signaling, including FAK, SRC, and STAT3 pathways, consequently weakened EMT-associated CSC-like properties (Figure xref )."
sparser
"Furthermore, we show the binding of secreted OPN to integrin αVβ3 and CD44 at the cell surface, leading to the activation of downstream cellular kinases such as focal adhesion kinase (FAK), Src, and Akt."
sparser
"OPN binds to multiple integrin receptors and CD44, which is one of the main OPN receptors xref ."
sparser
"The binding of OPN to integrins and CD44 initiates a downstream signalling cascade via the PI3K/AKT signalling pathway leading to NF-κB mediated cell proliferation and survival ( xref – xref )."
sparser
"Other factors reported to be important in murine HSC lodgment include transmembrane-bound stem cell factor [ xref ] and osteopontin, which can bind to CD44, as well as α 4 β 1 and α 9 β 1 integrins, and can act as a chemoattractant [ xref ]."
sparser
"As seen from Fig.  xref , OPN (SPP1) directly interacts with CD44 and FGF2, which in turn interact with several other proteins, including vimentin (VIM) through CD44."
sparser
"The intracellular form of OPN (iOPN), an integral component of the CD44-ERM complex, is seen to be involved in migrating fibroblasts, macrophages, osteoclasts, and metastatic breast cancer lines [ xref , xref ]."
sparser
"Extensive overlapping fragment analyses suggests that both dentin matrix protein 1 and osteopontin interact with cell surface CD44 through their amino termini."
sparser
"The siblings OPN and DMP1 also bind CD44, a cell surface polymorphic hyaluronate receptor that participates in numerous cellular functions including lymphocyte activation, recirculation, homing, hematopoiesis, and tumor metastasis."
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sparser
"The interaction of OPN with CD44 induces the migration of breast, melanoma, and multiple myeloma cells [ xref , xref , xref ]."
sparser
"In this study we did not investigate OPN binding interactions with CD44 on LCs/DCs."
reach
"Lee et al. have reported the results showing that interaction between OPN and CD44 increased the resistance to UV induced apoptosis in gastrointestinal cancer cells [22]."
sparser
"Binding of OPN to tumor cell membrane receptor CD44v6 can enhance tumor cell motility [ xref ] and increase the immune adaptation of OPN-expressing cells [ xref ]."
reach
"OPN binding to CD44 also increases clonogenicity of colon cancer cells through c-jun-jnk signaling (Rao et al., 2013)."
reach
"The specific, dose and integrin dependent binding of osteopontin to CD44 is implicated with roles in adhesion, migration, modulation of cytokine secretion, anti-apoptotic signaling and tumor invasion."
sparser
"These results suggest that the functional interaction between osteopontin and CD44 protects AVSc-VICs from calcium deposition."
sparser
"Binding of OPN to CD44 induces foci formation, invasion, and tumorigenesis of H-Ras-V12-transformed cells ( Teramoto et al., 2005 )."
sparser
"Binding of osteopontin to the intracellular part of CD44 is important for cytoskeletal functions [ xref , xref ], transcriptional regulation, and anti-apoptotic signaling in normal and malignant cells [ xref , xref , xref , xref ]."
sparser
"Because the interactions between CD44 and its ligands, HA and OPN, have been shown to upregulate osteoclast differentiation and function, in addition to the cell-cell interactions mediated by RANK and RANKL, the cell-matrix interactions mediated by these molecules may also contribute to the progression of osteoclastic bone destruction."
sparser
"This protein was utilized to study the possible competition of biotin-C21 binding to CD44 by HA (Figure xref ) and OPN (Figure xref )."
sparser
"OPN directly interacts with integrin β3 and CD44 [ xref , xref ]; the RGD and SVVYGLR sequences in OPN are responsible for its interaction with integrin [ xref ], while CD44 binding sites in the OPN sequence have not yet been identified."
sparser
"HA as a CD44 ligand interacts with osteopontin, collagen, and laminin."
SPP1 activates CD44.
10 |
SPP1 activates CD44. 10 / 10
10 |
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IL10 affects IL10RB
2 30 | 19 9
IL10 binds IL10RB.
15 | 19 5
15 | 19 5
sparser
"Epistatic interaction of the IL-10 gene with the IL-10 signaling pathway genes, IL10RB and HO1, in pediatric IBD."
sparser
"The specific findings include the following: (1) IL-10 rs3024496 is identified to be associated with pediatric IBD; (2) an aa interaction was found between IL-10 SNPs rs3024496 and rs1800872; (3) the SNP-SNP interaction in the IL-10 gene affects its action with the IL-10 receptor IL10RA ; (4) the IL-10 signaling pathway genes IL10RB and HO1 together are significantly associated with pediatric IBD via SNP-SNP interaction; and (5) a significant association of the three genes, IL-10 , IL10RB and HO1 , with pediatric IBD was identified from epistatic interaction analysis among three SNPs."
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sparser
"In this example our goal was to see whether an interaction between IL10 and IL10RB has a synergistic effect on the risk for GVHD."
reach
"Furthermore, the R198W substitution mutation in IL-10RB, also destroys the interaction between IL-10 and IL-10RB, and this mutation is observed in endometrioid carcinoma."
sparser
"For instance, E41* nonsense mutation in IL-10RB, abolishes the interaction of IL-10 with IL-10RB, blocking IL-10 signaling."
sparser
"The IL-10R2, which is widely expressed [ xref – xref ], binds IL-10 only after IL-10 binds to the IL-10R1 [ xref – xref ]."
reach
"Recent study of binding of IL-10 to IL-10R2 by peptide scans [XREF_BIBR] showed that, although IL-10R2 did not form a binary complex with IL-10, it recognized regions of helix A and loop AB of IL-10 (amino acid residues 19-43) when they were presented as 15-mer peptides."
reach
"During the IL-10 signaling transduction, IL-10 binds to receptors IL10RA and IL10RB, and activates Jak1 and Tyk2, leading to phosphorylation of STAT3."
reach
"IL-10 binds IL-10R, a dimeric receptor composed of a high affinity IL-10R1 chain predominantly expressed on leukocytes and unique to IL-10 recognition, and an ubiquitously expressed IL-10R2 chain involved in the recognition of other cytokines from the IL-10 family (IL-22, IL-26, IL-28A, IL-28B, and IL-29) [XREF_BIBR, XREF_BIBR]."
reach
"While the IL-10R1 and IL-10R2 ECDs bind IL-10, the ICDs are constitutively associated with JAK1 and TYK2 kinases, respectively."
sparser
"Thus, in addition to pairing with IL-10R1 to form the IL-10 signaling complex, IL-10R2 forms IL22R1/IL-10R2 ( xref ; xref ), IL-20R1/IL-10R2 ( xref ; xref ), and IL28R1/IL-10R2 ( xref ; xref ) heterodimers that are activated by IL-22, IL-26, and IL-28a,b/IL29, respectively."
sparser
"Expression of IL10RB was also increased (5-fold) in response to diclofenac treatment; as a co-receptor, IL10RB interacts with heterodimeric receptor complex of IL-10 cytokine family members and activate JAK/STAT signaling pathway [ xref – xref ]."
sparser
"However, IL-10R2 interacted with defined IL-10- and IL-22-derived peptides supporting the hypothesis that cytokine binding to its corresponding R1 chain creates a binding site on this cytokine for IL-10R2."
sparser
"The interaction between IL10RB, IL10RA, and IL-10 has been shown to impede the secretion of many cytokines, including IL-6 ( xref )."
sparser
"In mammals IL-10 interacts with a single-receptor complex composed of IL-10R1 and IL-10R2."
sparser
"IL-10 binds to a heterodimeric IL-10 receptor complex consisting of the constitutively-expressed IL-10R2 subunit and the activation-induced IL-10R1 subunit."
sparser
"Sequential assembly of IL10 with IL10RA and IL10RB engages the Janus tyrosine kinases Jak1 and Tyk2, which are associated with IL10RA and IL10RB respectively."
sparser
"The structure of the human IL-10-IL-10R1 complex interacting with two IL-10R2 chains has been predicted [ xref , xref ]."
sparser
"A model for binding of IL-10 to IL-10R1 and IL-10R2 has been proposed recently based on site-directed mutagenesis experiments xref , updating the previously published model of the ternary IL-10/IL-10R1/IL-10R2 complex xref ."
sparser
"Based on the details of the ternary complexes of IL-10R2 with CMV IL-10 and IL-10R1, 28 it would appear that the glycosylation sites are not in a position to interfere with the formation of the ternary complex."
sparser
"We know that in the IL-10 pathway, upon binding of IL-10 to cell receptors IL10RA and IL10RB, the IL-10 receptor complex members JAK1 and Tyk2 are activated and catalyze phosphorylation of themselves and then of IL10RA[ xref , xref ], thereby forming a docking site for STAT3."
sparser
"It has been shown that IL-10 initially binds to its signaling receptor IL-10R1 (IL-10Rα) and that this interaction changes the cytokine conformation by allowing the association of the IL-10IL-10R1 (IL-10Rα) complex with IL-10R2 (IL-10Rβ) [ xref ]."
sparser
"IL-10 signaling transduction occurs through binding of IL-10 to its receptors IL10RA and IL10RB to form a complex, with downstream molecules, Jak1 and Tyk2, activating STAT3[ xref , xref ]."
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sparser
"IL-10 binds to both IL-10R1 and IL-10R2 which are closely linked to IL-20 sub family cytokine (except IL-22) [ xref ]."
IL10 activates IL10RB.
2 15 | 4
IL10 activates IL10RB. 19 / 19
2 13 | 4
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reach
"IL-10 signals through a receptor complex consisting of two IL-10R1 and two IL-10R2 subunits, which then triggers STAT3 phosphorylation at tyrosine 705 and serine 727 via the phosphorylation of the cytoplasmic tails of IL-10R1 and IL-10R2 driven by JAK1 and Tyk2, respectively."
reach
"IL-10 increased Il10rb only in rat."
reach
"THP-1 macrophages transfected with either unspecific control siRNA or IL10RB specific siRNA were cultivated in different media after transfection and treated with IL10."
signor
"Functionally active il-10 receptors are composed of two distinct subunits. The il-10 receptor ? Chain is a 110-kda polypeptide that plays the dominant role in mediating high affinity ligand binding and signal transduction. The il-10 receptor ? Subunit (also known as crf2_4) is predicted to be a 40-kda polypeptide that is largely required only for signaling."
reach
"In turn, IL-10 secreted by Th1 and T cells stimulate IL-10R1 and IL-10R2 on Kupffer cells and macrophages, causing their prolonged activation."
signor
"The il-10r2 chain is ubiquitously expressed, whereas the il-10 activity is restricted mainly to cells of hematopoietic origin (35, 36). This raised the question of why the second chain of the il-10 receptor complex is widely expressed when its function was required only in limited cellular subsets. One hypothesis is that the il-10r2 chain is shared by receptors for ligands other than il-10"
IL10 activates IL10RB bound to IL10RA. 2 / 2
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SIRPA affects CD47
12 | 38
12 | 27
sparser
"Confocal imaging revealed that the treatment with anti-SIRPα-AK750 completely inhibited the SIRPα-CD47 binding unlike the control IgG-AK750 supramolecules ( xref )."
sparser
"Nonetheless, these macrophages can mount robust responses against cancer when given the appropriate antibody stimulus. xref Macrophages fail to recognize tumor cells as foreign due at least in part to the CD47-SIRPα interaction, a myeloid-specific immune checkpoint."
sparser
"The interaction between CD47 and SIRPα, which are both members of the superfamily of immunoglobulins, also plays a role in the immunological recognition of “self” to prevent macrophage phagocytosis [ xref ]."
sparser
"Signal regulatory protein α (SIRP α ), a transmembrane protein that is predominantly expressed in dendritic cells (DCs) or macrophages, interacts with CD47 that is overexpressed in almost all types of tumor cells."
sparser
"This presents the possibility of cross-talk between the two pathways, in which CD47 binds SIRPα, leading to an increase in MMPs."
sparser
"In the context of in vitro migration into fibrillar collagen I, SIRPα on the migrating macrophages can not be ligated by extracellular CD47 essentially, suggesting regulation of interstitial amoeboid migration by either cis CD47-SIRPα interactions or by ligand-independent SIRPα signaling."
sparser
"Here, inhibiting cis interactions between SIRPα and CD47 on the same macrophage increases eating approximately the same as inhibiting trans interactions."
sparser
"NOD-SIRPα reportedly binds human CD47 65-fold more tightly than human SIRPα [ xref ]."
sparser
"SIRPα binding to the Ig extracellular domain of its cognate ligand, CD47, prevents CD47 expressing cells from being targeted by inflammatory cells [ xref - xref ]."
sparser
"The human sequence of SIRP-alpha's N-terminal Ig domain, which binds CD47, differs from mouse by 34%, whereas the human sequence of CD47's lone Ig domain differs from mouse by almost 50%."
sparser
"Human CD47 binds to thrombospondins, SIRPα and SIRPγ."
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sparser
"On the other hand, since the interaction between neuronal CD47 and microglial SIRP-α results in the inhibition of microglia [ xref ], the inefficient CD47/SIRP-α interaction between misshapen cells and microglia within the epileptogenic lesions may conduce to microglial activation, which abundantly occurs in epileptogenic lesions of FCD IIb and TSC and is thought to perpetuate and prolong the inflammation [ xref , xref – xref ]."
sparser
"To overcome tolerability and “antigen sink” issues arising from widespread CD47 expression, we generated dual-targeting bispecific antibodies that selectively block the CD47-SIRPα interaction on malignant cells expressing a specific tumor-associated antigen; e.g., CD19 or mesothelin."
sparser
"Moreover, by combining the recruitment and activation of FcRs via the antibody Fc domain and the blockade of CD47-SIRPα interaction by the endogenous low affinity CD47-antagonistic SIRPα domain, licMAB molecules significantly enhanced phagocytosis of tumor cells."
sparser
"When SIRPα binds with CD47 through the Ig-like domains in its N-terminal region, signaling through SHP-1 or SHP-2 is activated in a phosphorylation-dependent manner, followed by a panel of different downstream signaling events ( xref – xref )."
sparser
"While, it is clear that innate immunity represents a major barrier to tolerogenesis in allotransplantation, this phenomenon is presumably even more relevant to xenotransplantation due to the involvement of natural antibodies, CD47/SIRPα-mediated interactions, and presumably many other still unknown factors."
sparser
"SIRPα-CD47 interaction is served as a “don't eat me” and “self-recognized” signaling and it could be a therapeutic target for human tumors [ xref , xref – xref ]."
sparser
"Humanized anti-CD47 antibody, Hu5F9-G4, blocked CD47-SIRPα interactions efficiently and demonstrated high therapeutic efficacy in vitro and in patient-derived xenograft models of group 3 MBs."
sparser
"We describe here the crystal structure of the full three-domain extracellular region of SIRPα, revealing that the topology of the CD47-SIRPα interaction is compatible with productive engagement occurring when cells come together in synapse-like contacts."
sparser
"Although further studies in xenogeneic settings are needed to reach a conclusion, it is likely that DST will be less efficient in suppressing xenoresponses in a transplant setting when the donor CD47 does not interact with the recipient SIRPα."
sparser
"The enhanced in vivo circulation of CD47-Lenti is therefore due to a CD47-SIRPA interaction."
sparser
"After intraplaque hemorrhage, a bulk of RBCs is deposited and degraded over days by macrophage phagocytosis activity through PS-receptors or natural occurring antibodies toward Band 3 or CD47-SIRP α interaction [ xref – xref ] as a part of a defence mechanism against oxidative burden, and this event promotes atherosclerotic lesion instability [ xref , xref ]."
sparser
"From the identified DEPs, we confirmed five cell-surface receptors by flow cytometry: SIRPα and Siglec-9, which bind to CD47 and sialic acids, respectively, were found to be highly expressed on both CD16+ monocytes and CD1c+ mDCs."
sparser
"In this study, we show that SIRPalpha1 directly binds to the immunoglobulin variable domain loop of purified human CD47 and that such SIRP-CD47 interactions regulate PMN transmigration."
sparser
"Binding of the N-terminal immunoglobulin superfamily (IgSF) V-set domain of SIRPα (SIRPα d1) to the single IgSF domain of CD47 is mediated by the loops of the SIRPα IgSF domain, analogous to the interactions mediated by antigen receptors, albeit involving only a single domain ( xref , xref )."
sparser
"SIRPα binding to the extracellular immunoglobulin (Ig) domain of CD47 is conserved and species specific, with sequence homology between mice and humans in this region differing by 38% [ xref ]."
sparser
"The N-terminal immunoglobulin superfamily (IgSF) domain of SIRPα (d1) interacts with the single IgSF domain of CD47, a widely distributed membrane protein."
| 10
sparser
"TSP-1 and SIRP-α bind CD47 IgV loop xref and TSP-1 can inhibit SIRP-α-Fc binding to CD47 expressing-Jurkat cells xref ."
sparser
"The binding of CD47 to either SIRPα or TSP1 provides two anticancer strategies."
sparser
"Given recent insights into the physiological functions of CD47, potential side effects of therapeutic CD47-antibodies such as B6H12, which inhibits both CD47-SIRP and CD47-TSP1 interactions, include altered blood pressure [ xref ], hemolytic anemia, and prothrombotic or antithrombotic activities [ xref , xref ]."
sparser
"Interestingly, both TSP-1 and SIRPα are interacting with CD47 during synaptogenesis xref , xref , xref , xref , which means that other mechanisms appear to be involved in CD47-dependent regulation of the type of nerve fiber growth investigated in the present study."
sparser
"Notably, the widely used CD47 blocking antibody B6H12 inhibits binding of both SIRPα and TSP1 to cell surface CD47 ( xref )."
sparser
"However, CD47 modified nanoparticles showed a prominent anti-phagocytosis property in M1 cells that may in part be due to the complex signalling interactions of CD47 with SIRPα and TSP-1."
sparser
"One approach to avoid these shortcomings is to identify and develop small molecule molecular probes and pretherapeutic agents that would (1) selectively target SIRPα or TSP1 interactions with CD47, (2) provide a route to optimize pharmacokinetics, reduce on-target toxicity and maximize tissue penetration, and (3) allow more flexible routes of administration."
sparser
"This data is consistent with competitive binding of TSP1 and SIRPα to a single site on CD47, steric inhibition of binding to distinct but proximal sites, or allosteric inhibition ( xref )."
sparser
"Thus, we propose that treatment of tumor-bearing animals with CD47 blocking antibodies, which are known to inhibit both SIRPα and TSP1 binding to CD47, could directly modulate adaptive as well as innate anti-tumor immunity."
sparser
"Indeed, CD47 antibody targeting may affect NO pathway modulation and subsequent angiogenesis regulation, since a commonly used CD47-blocking antibody (clone B6H12) was previously shown to concomitantly disrupt both TSP-1:CD47 and CD47:SIRPα interactions ( xref )."
CD47 binds SIRPA and SIRPA. 1 / 1
| 1
sparser
"Sirpa -human CD47/mouse CD47-human SIRP-α interaction."
OSM affects LIFR
1 26 | 9 10
OSM binds LIFR.
13 | 6 7
13 | 4 7
sparser
"Both LIF and OSM can bind to the LIFR."
sparser
"Both LIF and OSM bind to the LIFR."
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sparser
"Oncostatin M binds the high-affinity leukemia inhibitory factor receptor."
reach
"Both LIF and OSM can bind to the LIFR."
reach
"Receptor components gp130, LIFR and OSMR that bind OSM are expressed by bone marrow osteoblastic cells, OB cell lines as well as mouse calvaria OBs, bone lining cells and osteocytes XREF_BIBR, XREF_BIBR."
reach
"Human OSM can bind to either the type I receptor complex consisting of gp130 and the LIFR (gp130 and LIFRbeta) [35] or the type II receptor complex consisting of gp130 and the OSMR (gp130 and OSMRbeta) [38]."
reach
"Competition binding studies demonstrate that OSM binds to the LIF receptor on MBL-5 ES cells."
reach
"In a cell-type dependent manner, OSM activates several signaling cascades including the JAK and STAT, MAPK and NF-kappaB pathways by binding to the gp130 and LIFR or gp130 and OSMRbeta complex."
reach
"The inability of OSM to completely block the binding of LIF is probably due to the presence of the alpha subunit of the LIF receptor on these cells which binds LIF with low affinity but does not bind OSM.33 Although the binding studies on the murine MBL-5 cells show that human OSM binds the murine high affinity LIF receptor with a five-fold lower affinity than human LIF, it is interesting that our culture experiments consistently showed that OSM and LIF were equipotent in maintaining the MBL-5 cells in an undifferentiated state."
reach
"OSM can bind to either OSMR : gp130 or LIFR : gp130 heterodimeric receptors."
sparser
"More specifically, signaling through the OSMR was associated with early stromal cell lineage commitment towards OBs through up-regulation of C/EBPβ and C/EBPδ whereas OSM action through LIFR was associated with inhibition of sclerostin expression in osteocytes."
LIFR binds OSM and OSMR. 2 / 2
| 2
sparser
"This loop is located near the "FXXK" motif in active site III, which is essential for OSM's binding to both LIFR and OSMR."
sparser
"Shortening of the loop enhanced OSM's interaction with OSMR and LIFR as shown by kinetic and equilibrium binding analysis, suggesting the loop may hinder receptor interactions."
OSM activates LIFR.
1 13 | 3 3
OSM activates LIFR. 20 / 20
1 13 | 3 3
reach
"gp130 and OSMR is activated only by OSM, but gp130 and LIFR can be activated by either LIF, OSM or both."
signor
"Oncostatin m binds the high-affinity leukemia inhibitory factor receptor"
reach
"Similarly, human OSM only activates gp130 and OSMRbeta and not LIFR in human adipocytes."
sparser
"Activation of the LIFR by OSM promotes bone growth and may also suppress breast cancer metastatic phenotypes [ xref , xref ]."
sparser
"11 The receptor for OSM includes gp130 and a specific chain, OSMR; in human, but not in mouse, OSM also activates LIF receptor complexes."
sparser
"In mouse cells, only mouse OSM is capable of activating the mouse OSM receptor; human OSM instead activates the LIF receptor."
reach
"gp130 and LIFR can be activated by LIF or OSM, but gp130 and OSMR is activated by OSM only."
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OSM affects IL6ST
1 1 21 | 9 13
OSM binds IL6ST.
1 11 | 4 6
1 10 | 4 6
sparser
"Oncostatin M receptor β forms the oncostatin M-specific type II receptor complex with gp130 ( Tanaka et al., 1999 )."
reach
"In contrast, OSM binds gp130 with low affinity but has little to no biological activity unless a second receptor chain is recruited, either the LIFRbeta or the more highly specific OSMRbeta [XREF_BIBR - XREF_BIBR]."
reach
"Following OSM binding to OSMR and gp130, JAK2 is phosphorylated, which in turn phosphorylates STAT3 permitting nuclear translocation and modulation of gene expression [XREF_BIBR, XREF_BIBR, XREF_BIBR]."
reach
"Other mediators, like interleukin-11 (IL-l l), leukaemia inhibitory factor (LIF) or oncostatin-M (OM) also bind to gp130 and use this molecule as signal transducer (Kishimoto 1992)."
reach
"Murine OSM on the other hand only binds to the gp130 and OSMR (type II) receptor complex with high affinity."
biogrid
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sparser
"Binding of OSM to its receptor and gp130 results in recruitment of JAK2 to the receptor complex and subsequent recruitment and phosphorylation of STAT3."
reach
"Only OSM could directly binds to gp130."
sparser
"Interestingly, gp130 binds directly to OSM, whereas complex formation with the other cytokines depends on additional receptor subunits."
reach
"In a cell-type dependent manner, OSM activates several signaling cascades including the JAK and STAT, MAPK and NF-kappaB pathways by binding to the gp130 and LIFR or gp130 and OSMRbeta complex."
omnipath
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sparser
"Indeed, functional studies in a GnRH-expressing cell line and in primary hypothalamic neuronal cells show that upon binding to gp130, IL-6 or oncostatin M can activate the MAPK and ERK 1/2 intracellular signaling cascade and lead to increased expression of early regulatory genes including c-fos (marker of neuronal activation), transcription factor Egr-1 (early growth response-1, regulator of cell proliferation and programmed cell death), or GADD45 γ (regulator of genomic stability and of growth arrest) [ xref ]."
IL6ST binds OSM and OSMR. 1 / 1
1 |
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OSM activates IL6ST.
1 10 | 3 5
OSM activates IL6ST. 19 / 19
1 10 | 3 5
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sparser
"In the AGM culture system, supplementation of OSM, which activates gp130, has been shown to be indispensable in addition to bFGF and SCF [12] ."
reach
"gp130 and LIFR can be activated by LIF or OSM, but gp130 and OSMR is activated by OSM only."
sparser
"OSM also activates gp130, either via its own OSM receptor (OSMRβ) subunit or via LIFR ( xref )."
sparser
"Using a dominant-negative LIF mutant (hLIF-05), we showed that in RC cell cultures mouse OSM (mOSM) activates exclusively glycoprotein 130 (gp130)/OSMR."
reach
"Apart from IL-6, other gp130 activators such as LIF, OSM and CNTF can also induce astrogliosis (Damiani and O'Callaghan, 2007; Sriram et al., 2004)."
reach
"Using a dominant negative LIF mutant (hLIF-05), we showed that in RC cell cultures mouse OSM (mOSM) activates exclusively glycoprotein 130 (gp130)/OSMR."
reach
"On the molecular level this usage of OSM from different species results in the stimulation of different receptor complexes : human OSM exclusively binds to the type I gp130 and LIFR system in mouse cells; murine OSM, however, exclusively activates the type II gp130 and OSMR system."
reach
"LIFR and gp130 can be activated by either LIF or OSM, but OSMR and gp130 is activated only by OSM [18]."
signor
"Stimulation of cells with the interleukin-6 family of cytokines triggers homo- or hetero-dimerization of gp130. The dimerization of gp130 leads to activation of associated cytoplasmic tyrosine kinases and subsequent modification of transcription factors. Some of these biological activities of il-6 are also often exerted by other cytokines, i.e. Il-11, lif, osm, cntf, and ct-2."
OSM phosphorylates IL6ST.
| 2 2
OSM phosphorylates IL6ST. 2 / 2
| 2
sparser
"Attempts to identify potential components revealed that CNTF, LIF, and OSM did indeed induce gp130 tyrosine phosphorylation; furthermore, gp130 could be isolated in complexes with either CNTF or LIF, and blocking antibodies to gp130 inhibited responses to CNTF and LIF as well as to OSM (Ip et al., 1992; Taga et al., 1992)."
sparser
"Our results demonstrate that both LIF and OSM cause tyrosine phosphorylation and activation of the gp130."
OSM phosphorylates IL6ST on tyrosine. 2 / 2
| 2
reach
"These results have been confirmed, and since there is some receptor cross-talk among gp130 cytokines [XREF_BIBR], it is critical to note that that mouse OSM only results in the tyrosine phosphorylation of gp130 and OSMRbeta and does not signal via LIFR [XREF_BIBR, XREF_BIBR, XREF_BIBR]."
reach
"Attempts to identify potential components revealed that CNTF, LIF, and OSM did indeed induce gp130 tyrosine phosphorylation; furthermore, gp130 could be isolated in complexes with either CNTF or LIF, and blocking antibodies to gp130 inhibited responses to CNTF and LIF as well as to OSM (Ip et al., 1992; Taga et al., 1992)."
IL15 affects IL2RG
2 26 | 14
IL15 binds IL2RG.
1 14 | 9
1 12 | 9
omnipath
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omnipath
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omnipath
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omnipath
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omnipath
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omnipath
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omnipath
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omnipath
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omnipath
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omnipath
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reach
"IL-15Rbeta (also known as IL-2Rbeta or CD122) and IL-15Rgamma c (also known as CD132) can bind to both IL-15 and IL-2 with intermediate affinity."
reach
"Thus, cytokines other than IL-2, such as IL-15, which bind to IL-2Rbeta and gammac, are important for the development of NK, NK + alphabeta T and gammadelta T cells."
reach
"In EAE, the upregulation of IL2RG and other IL15 binding receptors is widespread."
reach
"These results strongly suggest that the gamma c chain transduces major signal (s) involved in NK cell differentiation from hematopoietic progenitor cells and that IL-15 interaction with gamma c is involved in this process at an earlier step than IL-2 and IL-7 interactions of gamma c are."
reach
"Furthermore, IL-15 binds to gamma c with considerably lower shape complementarity than IL-2 or IL-4 (sc = 0.59 for IL-15 versus 0.84 for IL-2 and 0.82 for IL-4)."
signor
"The common gamma-chain (gamma(c)) is an indispensable subunit of the functional receptor complexes for il-4, il-7, il-9, and il-15 as well as il-2. Here we show that the gamma(c) is also shared with the il-21r complex."
reach
"IL-15 shares many similarities to IL-2 as it also binds to CD122 and gammac."
reach
"In the absence of IL-15Ralpha, the beta and gammaC complex binds IL-15 with an intermediate affinity and is capable of mediating responses [XREF_BIBR]."
reach
"At its site II interface, IL-15 binds to gamma c through a rather chemically ' featureless ' interface that stands in stark contrast to the highly polar and specific side chains contacts seen in the site I interface."
reach
"The binding of IL2 or IL15 to the IL2 and IL15Rbeta and gammac heterodimer induces JAK1 activation via the beta chain and JAK3 via the gamma chain that together phosphorylate tyrosine on the cytokine receptors and induce the tyrosine phosphorylation of STAT3, STAT5A and STAT5B that via SH2 domain interactions homodimerize, translocate to the nucleus and bind to regulatory regions of target genes."
2 |
omnipath
No evidence text available
omnipath
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IL15 activates IL2RG.
1 12 | 5
IL15 activates IL2RG. 18 / 18
1 12 | 5
omnipath
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omnipath
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omnipath
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omnipath
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omnipath
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omnipath
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omnipath
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omnipath
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omnipath
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signor
"The common gamma-chain (gamma(c)) is an indispensable subunit of the functional receptor complexes for il-4, il-7, il-9, and il-15 as well as il-2. Here we show that the gamma(c) is also shared with the il-21r complex."
reach
"IL-15 induces signaling by both cis- and trans-presentation of IL-15 and IL-15Ralpha to CD122 and gammac."
reach
"JAK3 is solely activated by type I cytokine receptors featuring a common gamma-chain (gammac) subunit that are activated by IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21 7; mutations in either the gamma-chain or JAK3 have been identified in humans as a cause of severe combined immunodeficiency disease (SCID), which manifests as a depletion of T, B, and natural killer (NK) cells with no other defects XREF_BIBR, XREF_BIBR."
reach
"Our results suggest the existence in both normal and leukemic CD34+ cells of a constitutive production of a bioactive IL-15 that does not lead to NK differentiation and further indicate that membrane bound IL-15 and constitutive activation of gammac are hallmarks of leukemic progenitors."
reach
"Since IL-15 and IL-2 stimulate signaling via the same receptor subunits, IL-2 and IL-15b and common gamma chain (gammac) 26, we wondered whether Tbkbp1 also played a role in regulating IL-2-stimulated signaling in NKT cells."
reach
"Moreover, although MFI value of pSTAT-1 in IL-15 stimulated, gammac receptor neutralized PBMCs (green line) was reduced in comparison with IL-15 stimulated normal PBMCs (P = 0.0027, Figure XREF_FIG), it is still remarkably elevated in comparison of MFI value in gammac receptor neutralized PBMCs (P < 0.0001, Figure XREF_FIG)."
IL1A affects IL1R1
2 18 | 12 7
IL1A binds IL1R1.
9 | 12 7
9 | 7 7
sparser
"Interleukin 1 receptor type II is a decoy receptor that can bind to IL1α, IL1β, and IL1R antagonist."
sparser
"To this end, we utilized an anti-TGFβ neutralizing antibody, isotype antibody as control, and the IL1R antagonist anakinra, a recombinant soluble nonglycosylated homolog of the human IL1Ra protein that competitively inhibits binding of IL1α and IL1β to IL1R ( xref )."
sparser
"Binding of IL1α or IL1β to IL1R1 leads to association of a serine/threonine kinase IRAK [12] and the accessory protein (IL1RAcP) with liganded receptor ( Fig. 2 )."
sparser
"Binding of IL1α or IL1β to the IL1R1 recruits mIL1RAP, which increases the avidity of the ligand to IL1R1."
omnipath
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omnipath
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omnipath
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omnipath
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omnipath
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omnipath
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omnipath
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omnipath
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reach
"32 IL-1Ra binds the proinflammatory cytokines interleukin-1alpha (IL-1alpha) and interleukin-1beta (IL-1beta), thus inhibiting their activity."
sparser
"Further, we show that binding of IL-1alpha to IL-1R activates the TACE-EGFR cascade in airway epithelial cells lacking normal CFTR function, exaggerating IL-8 production in these cells."
reach
"The IL-1R is comprised of two membrane proteins, IL-1R1 and IL-1R accessory protein (IL-1RAcP), and binds IL-1alpha, IL-1beta, IL-1RA, and IL-38."
reach
"After binding of IL-1alpha or IL-1beta to the IL-1R1, a complex signaling cascade is activated, eventually leading to " nuclear factor kappa-light-chain-enhancer of activated B cells " (NFkappaB) production and subsequent gene transcription [XREF_BIBR]."
sparser
"These results indicate that binding of IL-1alpha to IL-1R leads to CFTR-172-induced IL-8 production in the NHBE cells."
reach
"Binding of IL-1R1 with IL-1alpha or IL-1beta leads to subsequent recruitment of IL-1RAcP at the cell membrane [XREF_BIBR] and downstream cytosolic NF-kappaB activation."
sparser
"However, type I IL-1R binds IL-1alpha with 10-fold greater affinity than it does IL-1beta."
reach
"IL-1R1, which binds to both IL-1alpha and IL-1beta, can be detected in a variety of cell types, whereas the IL-1R2 is found on the cell surface of type B lymphocytes, neutrophils and macrophage, and binds with IL-1beta with higher affinity [XREF_BIBR]."
reach
"IL-1alpha binding to IL-1R contributes to CFTR-172-induced EGFR-P and IL-8 production."
reach
"Binding of IL1alpha or IL1beta to the IL1R1 recruits mIL1RAP, which increases the avidity of the ligand to IL1R1."
IL1A binds IL1B and IL1R1. 5 / 5
| 5
sparser
"Because mice deficient in the IL-1R cannot respond to IL-1, this result demonstrated that either IL-1a or IL-1b, both of which bind to the IL-1R, contributed to acute pathology after rVSV immunization."
sparser
"IL-1B and IL-1A are encoded by distinct genes and bind both to IL-1R1, found on nearly every cell and IL-1R2 ( xref )."
sparser
"Interleukin-1α (IL1α) and interleukin-1β (IL1β) both bind to IL-1R1 to initiate cell signaling."
sparser
"IL1R2 (2q11): Interleukin 1 receptor, type II binds IL1a, IL1b and IL1R1, inhibiting the activity of these ligands."
sparser
"The binding of IL-1alpha or IL-1beta to IL1R is an early step in IL-1 signal transduction and blocking this interaction may therefore be a useful target for the development of new drugs."
IL1A activates IL1R1.
2 9 |
IL1A activates IL1R1. 7 / 7
7 |
omnipath
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omnipath
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omnipath
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omnipath
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omnipath
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omnipath
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omnipath
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IL1A activates IL1R1. 2 / 2
2 |
bel
"Furthermore, IL-18R at least partly shares the signal transducing system with IL-1R. Thus, the IL-18-IL-18R system has a striking similarity to the IL-1-IL-1R system. From entrez gene summary of IL1R1: The protein encoded by this gene is a cytokine receptor that belongs to the interleukin 1 receptor family. This protein is a receptor for interleukin alpha (IL1A), interleukin beta (IL1B), and interleukin 1 receptor, type I(IL1R1/IL1RA). It is an important mediator involved in many cytokine induced immune and inflammatory responses."
bel
"IL-1RI activation is induced by IL-1? and IL-1? binding,"
IL1A activates IL1R1 bound to IL1RAP. 2 / 2
2 |
omnipath
No evidence text available
omnipath
No evidence text available
TNF affects TLR4
4 | 31 1
TNF binds TLR4.
| 31 1
| 25 1
sparser
"TLR1, TLR4 (1 of 4 SNPs) and TNF (1 of 4 SNPs) interacted with cigarette smoking."
sparser
"Hepatic TLR2, TLR4 and TNF-α mRNA are associated with hepatic inflammation in both HCV and HCV/HIV infection."
sparser
"Furthermore, the association of TLR2 and TLR4 with TNF-α production was most apparent in patients with active VL as the agonists stimuli increased production compared with the other groups."
sparser
"Melanoma growth was associated with a significant reduction in TNF-α, TLR-2 and TLR-4 mRNA expression in peritoneal macrophages compared to that in control mice ( P  < 0.05)."
sparser
"Of relevance, recent work shows that in lipopolysaccharide-stimulated mouse macrophages, TLR4 interacts initially with MyD88 to mediate the early phase TNF expression and then with the newly induced 4-1BBL to sustain longer term TNF production xref ."
sparser
"Data revealed that the TNFA expression was associated with the co-expression of TLR4 and IL4 under physiological conditions."
sparser
"We found that the expression of TLR4 was associated with the co-expression of TNFA and IL4 under both basic and physiological conditions."
sparser
"In order to define if the inhibitory effects of SB203850 on LPS-induced IL-1 β, IL-6 , TNF -α and TLR-4 transcription could be exclusively associated to LITAF activity or if it could be the result of LITAF interaction with the master pro-inflammatory transcription factor NF-ĸB, we performed in vitro experiments on LX-2 cells with sulfasalazine (SZA)."
sparser
"To further understand the mechanism of action of the Fcgr3-rs, we then investigated how the Fcgr3 and Fcgr3-rs interact with TLR4-mediated TNFα production following LPS stimulation."
sparser
"This decrease in TNF-α levels was not associated with a reduction in cell surface expression of CD14 and Toll-like receptor 4."
sparser
"In this work, further analysis showed that the addition in multivariable regression models of percent monocytes and lymphocytes did not modify the associations of DNA methylation of CD14, TLR4 and TNF-α."
sparser
"Endotoxin release in a compromised gut triggers an inflammatory cascade following binding to TLR4 and CD14 which results in the upregulation of TNFα expression ( xref )."
sparser
"Also, in mice, during experimental OM, persistent inflammatory responses of TLR2 –/– and TLR4 –/– mice were associated with an initial lack of induction of TNF after infection [ xref ]."
sparser
"The TLR4 +896 and TNF-alpha -308 polymorphisms were significantly associated with an increased risk for severe sepsis following burn trauma."
sparser
"Impaired TLR4-induced TNF production was associated to the lack of intracellular dynamin-dependent TLR-4 receptor trafficking to perinuclear regions in BMMCs, a diminished ERK1/2 and ELK-1 phosphorylation, and a decrease in c-fos and TNF mRNA accumulation."
sparser
"Down-regulation of TLR-4 by TNF-alpha is associated with LPS hyporeactivity for NF-kappaB formation, whereas upregulation of TLR-4 via IL-6 can increase the responsiveness of mononuclear phagocytes."
sparser
"The TNF superfamily member 4-1BBL physically interacts with TLR4."
sparser
"In the patient group, TNFA promoter genotypes -238 G/G and -376 G/G and the TLR4 299 A/A genotype were associated with an otitis-prone condition."
reach
"These macrophages had decreased SM content in their cells and have reduced recruitment of TLR4 and TNF receptor to the cellular membrane."
sparser
"Polymorphisms TNF-A-308G/A, IL-8-251A/T, TNF-B + 252A/G and TLR4 + 1196C/T were not associated with risk of any gastric lesion."
sparser
"These findings suggest that the expression of TNFA was mainly associated with TLR4 expression in BOECs under various experimental conditions."
sparser
"The expression of TLR4 was associated with the mRNA expression of TNFA (under physiological or pathophysiological + physiological conditions), IL4 (under physiological conditions), and IL1B (under pathophysiological conditions)."
sparser
"Moreover, therapeutic effects of Gal-LipoNP TLR4 siRNA were associated with suppression of the inflammatory cytokines IL-1 and TNF-α."
sparser
"Of the several isoforms of protein kinase C, protein kinase C epsilon (PKCε) is the PKC isoform ( xref ) that is associated with the Toll-like receptor 4, IL-12, and TNF-α mediated immune and inflammatory responses ( xref )."
sparser
"The basal up-regulation of TLR4 expression associated with endogenous high TNF-α and IL-12p70 production by monocytes from preeclamptic women confirms the activated profile of these cells by the disease process."
sparser
"To investigate whether TLR4 associated with IL-1 β and TNF- α expression induced by LPS, we pre-treated SFs with TAK-242 (1  μ M) for 2 h prior to LPS exposure."
TLR4 binds TNF and IL10. 3 / 3
| 3
sparser
"Moreover, using the co-expression data of gene pairs, the data showed that the co-expression of IL1B and TNFA (under pathophysiological conditions), the co-expression of TNFA and IL4 (under physiological conditions), and the co-expression of TNFA and IL10 (under pathophysiological + physiological conditions) was strongly associated with TLR4 expression."
sparser
"The results showed that TNFA ( d  = 0.61) and TLR4 ( d  = 0.34) were negatively associated with IL10 expression under basic conditions ( P  < 0.05)."
sparser
"Failure otitis media recovery in TLR2 −/− and TLR4 −/− mice is associated with decreased TNF and enhanced IL-10 expression, suggesting that abnormalities of innate immunity may contribute to otitis media in humans and that innate immune pathways could be targets of otitis media therapy."
TLR4 binds TNF and TNF. 1 / 1
| 1
sparser
"TLR4 expression was associated with TNF-α and TNF-β expression (p = 0.016 and p = 0.025, respectively) in these 2 groups."
TLR4 binds TNF and IL1B. 1 / 1
| 1
sparser
"The second principal component indicates that the high expression of TLR-4 was associated with high expression of pro-inflammatory cytokines TNF-α and IL-1β ."
TLR4 binds TNF and NR3C2. 1 / 1
| 1
sparser
"All three receptors influenced the production of IL-10, while TNF-α production was associated with expression of TLR4 and MR."
TNF increases the amount of TLR4.
3 |
Transcriptionally active TNF increases the amount of TLR4. 3 / 3
3 |
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
TNF decreases the amount of TLR4.
1 |
Transcriptionally active TNF decreases the amount of TLR4. 1 / 1
1 |
biopax:ctd
No evidence text available
TGFB1 affects TGFBR3
1 1 1 24 | 4 4
TGFB1 binds TGFBR3.
1 1 1 12 | 4 4
1 1 1 12 | 4 4
sparser
"Betaglycan binds TGF-beta 1 and TGF-beta 2 with similar affinity and this binding is to the core proteins, not the glycosaminoglycan side chains."
sparser
"Betaglycan binds with high affinity (low nM range) TGF-β1, -β2 and -β3, and promotes signaling by all these ligands as it can form complexes with the TGF-β receptor kinases [ xref , xref , xref ]."
bel
"from Figure 1 - Fig 1. The transforming growth factor beta (TGF-b) signaling pathway. TGF-b binds type II TGF-b receptor (TbRII), directly or through TbRIII, inducing association of TbRII with TbRI. TbRII then phosphorylates and activates TbRI, which then phosphorylates Smad2 or Smad3. Phosphorylated Smad2 or Smad3 associates with Smad4 and they translocate into the nucleus, where they activate transcription of target genes. Smad7 inhibits TGF-b signaling by preventing the activation of Smad2 or Smad3 by TbRI."
reach
"In contrast, nearly all receptor II in cells expressing betaglycan bound TGFbeta1 with high affinity."
sparser
"Cross-linking experiments showed that dexamethasone treatment increased the binding of radiolabeled TGF-beta 1 to betaglycan, but did not affect binding to the type II receptor."
sparser
"The binding of the betaglycan fusion protein to immobilized TGF-beta 1 was inhibited by fusion proteins representing the core proteins of the small interstitial proteoglycans decorin, biglycan and fibromodulin, each also known to bind TGF-beta."
reach
"XREF_BIBR Binding of TGF-beta1 to decorin, betaglycan, and biglycan inhibits its activity, suggesting a negative feedback loop XREF_BIBR."
biogrid
No evidence text available
reach
"Introduction of the cDNA into COS cells and Lti myoblasts induces expression of a heterogenously glycosylated 280-330 kd protein characteristic of the type III receptor that binds TGF-beta1 specifically."
reach
"Betaglycan binds TGF-beta 1 and TGF-beta 2 with similar affinity and this binding is to the core proteins, not the glycosaminoglycan side chains."
hprd
No evidence text available
omnipath
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omnipath
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omnipath
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omnipath
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omnipath
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omnipath
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omnipath
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omnipath
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omnipath
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omnipath
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TGFB1 activates TGFBR3.
12 |
12 |
omnipath
No evidence text available
omnipath
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omnipath
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omnipath
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omnipath
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MIF affects CXCR4
1 | 28 6
1 | 28 6
sparser
"MIF interacted with CXCR4-CXCR7 on platelets, defining CXCR7 as a hitherto unrecognized receptor for MIF on platelets."
sparser
"For example, the MIF receptors CXCR4 and CXCR7 form a complex, thus modulating CXCL12-mediated CXCR4-dependent chemotaxis (Thelen and Thelen, xref ; Levoye et al., xref )."
sparser
"For example Tarnowski et al. [39] reported that MIF secreted by rhabdomyosarcoma cells binds to both CXCR4 and CXCR7 on these cells."
sparser
"In addition to CXCL12-CXCR4 axis AMD3100 treatment might inhibit the interaction of CXCR4 with further ligands, MIF (macrophage migration inhibitory factor) and extracellular ubiquitin."
omnipath
No evidence text available
reach
"The CXCR2 and CXCR4 chemokine receptors also bind to MIF, an interaction that may contribute to the recruitment of inflammatory cells."
reach
"Although macrophage migration inhibitory factor and extracellular ubiquitin interact with CXCR4 as agonistic factors, CXCL12 was believed to be the sole chemokine ligand for CXCR4."
sparser
"Furthermore, MIFCXCR4 interaction increases in experimental bladder inflammation ( xref ), with PAR4-induced abdominal hypersensitivity shown to occur through MIF and at least partially also through CXCR4 on the urothelium ( xref )."
sparser
"By contrast, in the autocrine secretion by RMS cells, MIF may interact with CXCR4 and thus establish an autocrine regulatory loop."
reach
"In fact, MIF interacts with the classical chemokine receptors CXCR2 and CXCR4 [6], and also engages in binding to cell surface expressed invariant chain designated as CD74 [33]."
reach
"Therefore, we hypothesized that CXCR4 and MIF complex formation may also occur in the bladder."
sparser
"Therefore, we next asked whether an interaction between MIF and CXCR4 may be involved in MIF-stimulated activation of the JNK pathway."
reach
"The FDA approved CXCR4 antagonist AMD3100 inhibits MIF binding to CXCR4."
reach
"MIF can also bind the chemokine receptors CXCR2 and CXCR4, which are expressed on many CD74 negative cell types, linking it more closely to chronic inflammation such as artherosclerosis [XREF_BIBR]."
sparser
"In contrast, the interaction between MIF and CXCR4 remains incompletely understood."
sparser
"MIF interacts with its main receptor CD74 and its co-receptor CXCR-4, both overexpressed, promoting cell survival by PI3K/Akt activation, a possible link with EGFR and HER2 pathways and inhibition of autophagy."
sparser
"Signaling via CXCR4 is likely to be amplified by CD74 which interacts with MIF and CXCR4 as part of a complex explaining the significant effect on migration/invasion with the CD74 blocking peptide in xref ."
sparser
"Furthermore, the formation of a MIF, CD74, and CXCR4 ligand-receptor complex was revealed by our immunofluorescence staining and coimmunoprecipitation results."
sparser
"A functional heteromeric MIF factor is formed by CD74 and CXCR4 [ xref ] and its associated protein complexes (i.e. MIF, CD44, and CXCR) regulate various signal transduction pathways during immune-mediated inflammatory conditions [ xref , xref – xref ]."
sparser
"Surprisingly, At MDLs bind to the human MIF receptors CD74 and CXCR4."
sparser
"Apart from homodimerization ( xref , xref , xref ), CXCR4 forms a functional MIF receptor complex with CD74 ( xref ) and can form heterodimers with the chemokine receptor ACKR3 (previously CXCR7), modulating CXCL12/CXCR4 signaling as will be discussed in detail below."
sparser
"In contrast, no structure-activity relationship data are available yet for the interaction between MIF and its receptors CD74 and CXCR4."
sparser
"From the IP data, we show interestingly that CD74 would interact with MIF via CXCR4, which would likely amplify the signal via this receptor."
sparser
"The dogma of a monogamous relationship between CXCR4 and CXCL12 also has been challenged by the observations that HIV gp120 and MIF bind to CXCR4 [ xref , xref , xref ]."
sparser
"At the molecular level, this activity is based on a high affinity non-cognate interaction between MIF and the CXC chemokine receptors CXCR2 and CXCR4 [ xref , xref ]."
sparser
"At the molecular level, these activities are based on a non-cognate interaction between MIF and the CXC chemokine receptors CXCR2 and CXCR4."
sparser
"A role for electrostatic interactions between CXCR4(1–27) and MIF-RLR is further supported by our alanine scanning and the molecular docking results."
sparser
"In the context of atherosclerosis, interference with MIF binding to both CXCR2 and CXCR4 by using a MIF blocking antibody interfered with MIF’s pro-atherosclerotic functions (Bernhagen et al., xref ), while it would leave the protective homeostatic functions of the CXCL12-CXCR4 axis preserved (Koenen and Weber, xref )."
sparser
"To identify the MDSC MIF receptor, we evaluated two known receptors that bind MIF, CXCR2 and CXCR4."
sparser
"In addition, MIF can bind to CXCR2 and CXCR4 and lead to the proliferation of pulmonary artery smooth muscle cells and contribute to hypoxic PH xref - xref ."
sparser
"CXCR2 and CXCR4 are functional receptors of MIF; MIF binding to CXCR2 or CXCR4 triggers calcium influx, induces a rapid activation of integrins, and can subsequently mediate integrin-dependent arrest and chemotaxis of monocytes and T cells [ xref ]."
sparser
"In addition to CD74, the direct binding of MIF and CXCR2 or CXCR4 was also observed to induce calcium influx and the rapid activation of integrins by Gi-coupling [ xref ]."
sparser
"Inflammatory leukocyte recruitment is dependent on MIF-CXCR2 and MIF-CXCR4 interactions [ xref ]."
sparser
"Signaling through CD74/CD44 induces cell proliferation and inhibits apoptosis, and MIF interaction with the non-cognate receptors CXCR2 and CXCR4 modulates the migration of immune cells ( xref )."
sparser
"It has also been clearly demonstrated that MIF binding to its cognate receptors, CXCR2 and CXCR4, promotes leukocyte recruitment to the site of inflammation( xref , xref – xref )."
OSM affects OSMR
1 21 | 7 4
OSM binds OSMR.
1 11 | 7 4
1 10 | 5 4
sparser
"In vivo, high expression of OSM and OSMR mRNA (determined by RT-PCR) was associated with reduced ER (P<0.01) and progesterone receptor (P<0.05) protein levels in a cohort of 70 invasive breast cancers."
reach
"Following OSM binding to OSMR and gp130, JAK2 is phosphorylated, which in turn phosphorylates STAT3 permitting nuclear translocation and modulation of gene expression [XREF_BIBR, XREF_BIBR, XREF_BIBR]."
sparser
"Expression profiling of OSM-treated cell lines and cervical SCC tissue identified consistent patterns of gene induction following OSM:OSMR interactions, which led to functional analyses of OSM-induced promalignant effects in cervical SCC cells ( xref )."
sparser
"Our data suggest that OSMOSMR interactions may also be responsible for inducing TGM2 in other cell types, such as breast cancer cells, in which OSM promotes cell motility and metastatic behaviour and TGM2 has been associated with migration, invasion and metastasis xref – xref ."
sparser
"The pro-malignant effects associated with OSMR overexpression are critically mediated by JAK-STAT3 activation, which is induced by exogenous OSM and also by autocrine OSM-OSMR interactions."
reach
"Binding of OSM to OSMR, which is expressed by satellite cells and interstitial cells isolated from muscle, activates JAK1/2 tyrosine kinases with subsequent STAT3 tyrosine phosphorylation and activation in vitro."
signor
"The oncostatin m receptor (osmr) is part of receptor complexes for oncostatin m and interleukin-31."
reach
"After getting the equilibrated states of the simulation system, per-residue energy contribution was calculated to characterize the important residues for the OSM and OSMR complex formation."
sparser
"As OSM:OSMR interactions are known to induce STAT3 ( xref ), we tested the importance of JAK/STAT3 signalling in the induction of EMT-related genes."
reach
"Human OSM is capable of binding not only to the OSMR but also to the LIF receptor, in contrast to murine OSM that only binds to the OSMR [XREF_BIBR]."
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
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omnipath
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omnipath
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omnipath
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omnipath
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omnipath
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omnipath
No evidence text available
LIFR binds OSM and OSMR. 2 / 2
| 2
sparser
"This loop is located near the "FXXK" motif in active site III, which is essential for OSM's binding to both LIFR and OSMR."
sparser
"Shortening of the loop enhanced OSM's interaction with OSMR and LIFR as shown by kinetic and equilibrium binding analysis, suggesting the loop may hinder receptor interactions."
IL6ST binds OSM and OSMR. 1 / 1
1 |
omnipath
No evidence text available
OSM activates OSMR.
10 |
OSM activates OSMR. 10 / 10
10 |
omnipath
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omnipath
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omnipath
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omnipath
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omnipath
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omnipath
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omnipath
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omnipath
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omnipath
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omnipath
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LRP1 affects LDLR
| 24 2
| 22 2
sparser
"The second alternative seems to be less probable since our control ELISA experiments revealed that both mAbs exhibit no interaction with another member of the LDL receptor family, LRP, which has 31 homologous CR-domains (not shown), suggesting that mAb 1H10 and mAb 1H5 are highly specific to VLDLR."
sparser
"We found that PCSK9 directly interacts with LDLR and LRP1 ( xref )."
sparser
"These observations suggest that the pathways of cellular Aβ and apoE uptake are differently regulated depending on their binding to specific apoE receptor LDLR, LRP1 and/or HSPG."
sparser
"We also examined the contribution of HSPG binding by incubating LDLR −/− LRP −/− cells at 4°C with DiI-VLDL."
sparser
"The three homologous RAP domains were analyzed and compared with the binding to the giant LDL receptor family receptors, megalin and LRP."
sparser
"One of ApoE’s major physiological roles is in lipid metabolism; ApoE mediates high-affinity binding of ApoE-containing lipoproteins to the low-density lipoprotein receptor (LDL-R) and LDL receptor related protein 1 (LRP1), facilitating clearance of triglyceride-rich lipoproteins from the circulation."
sparser
"Compensatory LDLR Up-regulation in ApoE −/− LRP1 n2/n2 Mice is Associated with Increased Chylomicron Remnant Clearance."
sparser
"This process is regulated by several molecules, including apolipoprotein E (apoE), which may serve as a chaperone protein for Aβ and in some instances facilitate uptake of Aβ but, in other circumstances, inhibit uptake ( xref ), in part through interaction with the apoE receptors LDLR and LRP1 (for a review, see xref )."
sparser
"In the Apoe −/− mouse, the major defect is in the clearance of apoB48-containing lipoproteins that are normally removed by apoE-mediated binding to LRP1 or LDLR."
sparser
"On entering circulation, triglycerides are hydrolyzed by lipoprotein lipase (LPL) and the resulting products are taken up by interaction of ApoE with LDL receptor or LRP."
sparser
"We next tested whether APOE could interact with its known receptors LRP1 and LDLR in the E14.5 brain."
sparser
"Based on previous reports and studies addressing the interactions of LDLR and LRP1 with SNX17 ( xref , xref ), we examined whether the NPxY motif is sufficient for SNX17 binding."
sparser
"In a European study (Switzerland) Alzheimer's disease could be predicted with 74% accuracy by combined polymorphisms in APOE , SOAT1 , OLR1 , CYP46 , LPL , LIPA , CH25H and APOA4 while PPARA , LDLR , and LRP1 were not associated with risk in this population ( Papassotiropoulos et al., 2005 ) although each has been associated with Alzheimer's disease in other studies."
sparser
"Although Lp(a) may bind to LDLR and LRP, the binding does not seem to be important for its degradation."
sparser
"The different rates of uptake of CRLPs oxCRLPs and pCRLPs by macrophages demonstrated here, therefore, could be explained by effects on interaction with the LDLr and the LRP caused by differences both in the conformation of apoE and in the number of apoE molecules able to bind to the receptors, even though the total amount of apoE associated with the particles is not changed."
sparser
"In contrast, apoE2 binds to LDLR and LRP1, but not syndecan-1, with lower affinity, implying that apoE on TRLs competes with Lp(a) for LDLR and LRP1-mediated hepatic clearance."
sparser
"This requirement for calcium is a characteristic feature of binding of ligands to the LDL receptor or LRP [38] ."
reach
"ApoE4 has higher affinity for VLDL and IDL than HDL compared to apoE3, resulting in more efficient delivery of cholesterol containing lipoproteins to the liver, while the apoE2 is defective in LDLR and LRP binding, resulting less efficient delivery of cholesterol containing lipoproteins to the liver [19]."
sparser
"However, the particular cell-type specific interaction of the LDLR and Lrp1 as well as between Lrp1 and Lrp 4, 5, and 6 will need to be explored by bone-cell specific conditional targeting of each receptor."
sparser
"The contribution of the exposure of apoE molecules on the surface of triglyceride-rich particles sensitive both to lipolysis and plasma triglyceride content to the interaction with LDL receptor and LRP is emphasized."
sparser
"In addition, apoE may compete with Aβ for binding to common cell surface receptors, LRP1 and LDLR."
reach
"23 Lack of the putative LDLR binding domains in apoB100-beta may also prevent the secretion of newly packaged but underlipidated particles by enhancing the degradation of apoB through enhanced interactions between apoE and LDLR and LRP."
sparser
"ApoE4 has marginally greater receptor-binding capability than ApoE3, but ApoE2 is defective with only 2% and 40% binding activity to the LDLR and LRP, respectively."
sparser
"These data indicate that hypercholesterolemia in Ovx rats is associated with a reduction of hepatic LDL-R and Lrp1 gene expression."
VLDLR binds LDLR and LRP1. 2 / 2
| 2
sparser
"Apolipoprotein E, a key ligand for cholesterol homeostasis, has been shown to interact with LDLR, LRP and VLDLR, through these clusters."
sparser
"The binding of lipoproteins to LRP, VLDL receptor and LDL receptor can be inhibited by a 39-kDa receptor-associated protein (RAP) which could act as a modulator of receptor activity ."
IL10 affects CD4
| 3 17 5
IL10 binds CD4.
| 17 2
| 17 2
sparser
"These findings indicate that HLA class I expression on myeloid target cells is required for efficient CD4 IL-10 -mediated lysis, and that the interaction of CD4 IL-10 cells with HLA class I-expressing target cells mediates their activation and the consequent release of GzB."
sparser
"Increased SOCS1 expression in RA CD4 + T cells may therefore be associated with both the impaired responsiveness to IL-10 and to IL-10-mediated STAT3 activation, and defective SOCS3 expression may be responsible for persistent STAT3 activation in response to serum IL-6."
sparser
"We show that CD4 IL10 production is associated with high-parasite antigen burden, consistent with other infections as well as non-infectious disease models ( xref , xref )."
sparser
"The transcription factor cMaf is essential for IL-10 transcription in macrophages and upregulation of cMaf is associated with IL-10 expression in CD4 + T cells [ xref , xref ]."
sparser
"To determine if the IL-10 production is associated with CD4 T lymphocytes, CD3 + CD4 + cell subpopulation were gated on and the relative production was assessed."
sparser
"Monofunctional IL10 CD4 T cells were associated with high antigen burden and/or repeated infections, and were associated with protection from symptoms once infected."
sparser
"We determined that colitis in the IL10 −/− CD4 + ➔RAG −/− mice was associated with a decrease in retinal function, as assessed by electroretinography (ERG). xref provides example ERG signals from a PBS➔RAG −/− mouse and an IL10 −/− CD4 + ➔RAG −/− mouse, with the signals from each mouse obtained at four flash intensity settings (0.1, 1, 4, and 16, as described in the Methods)."
sparser
"In our cohort, it was specifically monofunctional IL10 CD4 T cells that were associated with a reduced risk of symptomatic malaria following Pf infection; high frequencies of these cells were significantly associated with reduced odds of symptomatic malaria when infection."
sparser
"We previously reported that a subset of CD4 T-cells secreting high levels of the immunosuppressive cytokine interleukin-10 (IL-10) is significantly associated with late onset of type 1 diabetes and is constitutively present in a majority of nondiabetic individuals."
reach
"CD4 + MLN T cells from B. animalis monoassociated IL-10-/- mice secreted high levels of IFN-gamma and IL-17 in response to B. animalis lysate."
sparser
"Previous study has reported the regulatory role of mast cells in that they interact with conventional CD4 + T cells to generate IL-10 producing regulatory T cells through the axis of ICOSL/ICOS xref ."
reach
"Treg-cell levels were evaluated by flow cytometry (Treg cells identified as CD3 (+) CD4 (+) CD25 (high) CD127 (low)) and by mRNA expression of forkhead box P3 or of Treg associated cytokine interleukin 10."
sparser
"Thus, melatonin modulates the differentiation of human Th17 and Tr1 cells in vitro , and endogenous melatonin levels are associated to the expression levels of IL17 and IL10 in peripheral CD4 + T cells in RRMS patients."
sparser
"Impaired IL-27 signaling was associated with decreased IL-10 + virus-specific CD4 + T cells and delayed viral control ( xref )."
sparser
"Antibiotic treatment was associated with an increase in IL-10-producing CD4 + Foxp3 + T cells in the cervical and mesenteric lymph nodes, with consequent protection from disease in adoptive transfer experiments ( xref )."
sparser
"IL-10 function is required for the full protective effect of small-molecule Hedgehog pathway activation in colitis; this pharmacologic augmentation of Hedgehog pathway activity and stromal IL-10 expression are associated with increased presence of CD4 + Foxp3 + regulatory T cells."
sparser
"Multiple bacterial species have been associated with the induction and regulation of CD4 + Foxp3 + and CD4 + IL10 + regulatory T cells in the intestine."
sparser
"Thus, co-existent helminth infection is associated with an IL-10 mediated (for filarial infection) profound inhibition of antigen-specific CD4(+) T cell responses as well as protective systemic cytokine responses in active pulmonary TB."
sparser
"The increased lupus dermatitis in LC-ablated mice was associated with reduced IL-10-producing CD4 + T cells in dLNs, and increased local dermal macrophage infiltration."
IL10 increases the amount of CD4.
| 3 3
IL10 increases the amount of CD4. 6 / 6
| 3 3
isi
"Re-exposure of adult offspring to SEB remarkably reduced the suppressive capacity of Tregs to CD4 + T cells and the expression levels of TGF-beta and IL-10 in the thymus, but had no effect on production of IL-4 and IFN-gamma."
isi
"IKZF3/Aiolos Is Associated with but Not Sufficient for the Expression of IL-10 by CD4"
reach
"Elevated IL-10 was shown to increase HIV infection of macrophages by upregulating surface expression of CD4 and CCR5."
isi
"The expression of IL-10 during naive CD4 + T cell differentiation in vitro was tested."
reach
"Treatment of Healthy CD4 + T Cells with 5-azaC Enhances IL10 and IL13 mRNA Transcription."
reach
"IL-10 can upregulate glucocorticoid-receptor expression of asthmatic CD4 + T cells with glucocorticoid resistant [XREF_BIBR]."
CD44 affects BSG
| 24 1
| 24 1
sparser
"We find that CD44 forms complexes with MCT1, MCT4, and emmprin at the surface of human breast carcinoma cells and that these interactions most likely involve a variant form of CD44."
sparser
"In summary, we have shown here that both CD44 and emmprin interact with MCT1 and MCT4 at the plasma membrane of malignant breast carcinoma cells."
sparser
"CD147 and CD44 have been associated to MCT1 and MCT4 in different tumor types."
sparser
"Interaction of CD44 with emmprin, MCT1, and MCT4."
sparser
"CD44 can bind EMMPRIN as well as MCT1 and MCT4 on the cell surface."
sparser
"In order to assess the association of CD147 and CD44 to MCT expression in tumours, we searched for associations among expressions of these proteins (Tables xref and xref )."
sparser
"The association of CD44 and CD147 with MCT transporter proteins has been documented for different cancers xref , xref , xref – xref ."
sparser
"In contrast, internalized CD44, CD98 and CD147 were predominantly associated with endosomal tubules and vesicles that were devoid of EEA1 ( xref )."
sparser
"Similarly Hao et al . [ xref ] showed that CD44 and CD147 are also associated with metastatic PCa that has the potential to alter the tumor microenvironment."
sparser
"Meanwhile, CD147 has been reported to form a complex with integrinβ to activate PI3K/Akt pathway and then reprogram lipid metabolism through Akt/mTOR/SREBP1 signaling in HCC. xref , xref As a cancer-associated biomarker for detection and an effective target for treatment, CD147 also forms complexes with CD44 and EGFR to induces EGFR downstream signaling (ERK, pSTAT3) in breast cancer and pancreatic cancer. xref , xref Also, loss of TIP30 can improve EGFR activity in various tumors and Tip30 knockout in primary hepatocytes of mouse leads to trapping of EGF-EGFR complex, which contributes to prolonged EGFR signaling. xref , xref , xref , xref Considering both TIP30 and CD147 could regulate EGFR related signaling, it would be interesting to figure out whether downregulated TIP30 expression may synergistically act with increased CD147 expression in HCC in future research."
sparser
"In a more recent study, we demonstrated that CD147 is also associated with EGFR and CD44 in similar lipid domains and that CD147 induces invasiveness via up-regulation of EGFR-Ras-ERK and hyaluronan-CD44 signaling as well as MT1-MMP expression (Grass et al, unpublished data)."
sparser
"Additionally, we observed that CD147-mediated MT1-MMP-dependent invadopodia activity was partially dependent on CD44–hyaluronan interactions that facilitated CD44–EGFR–CD147 heterocomplex formation in lipid rafts, which resulted in Ras-ERK (extracellular signal regulated kinase) signalling."
sparser
"We also found that oncogenic Ras regulates CD147 expression, hyaluronan synthesis, and formation of CD147-CD44-EGFR complexes, thus forming a positive feedback loop that may amplify invasiveness."
sparser
"Furthermore, CD147 promotes assembly of signaling complexes containing CD147, CD44, and EGFR in lipid raftlike domains."
sparser
"It is reported that EMMPRIN associated with hyaluronan and CD44 enhances lactate efflux, resulting in promoting cell proliferation ( xref )."
sparser
"Perturbation of hyaluronan- CD44 interaction or down-regulation of emmprin destabilize or inhibit assembly of MCT1 and MCT4 complexes in the plasma membrane and, consequently, suppress lactate efflux."
sparser
"Hyaluronan interacts with BCRP, extracellular matrix metalloproteinase inducer, and CD44 (the hyaluronan receptor, a stem cell marker often associated with breast cancer)."
sparser
"Emmprin and CD44 also interact with various multidrug transporters of the ABC family and monocarboxylate transporters associated with resistance to cancer therapies."
sparser
"Following CD44 knock down, the reduction in CD44 expression was also associated with a concomitant reduction in the levels of expression of CD147, MCT4 and MRP2 ( xref )."
sparser
"Several studies have demonstrated close association of CD147 and CD44."
sparser
"CD44 and CD147 are associated with cancer metastasis and progression."
sparser
"It has also been shown that CD44 forms complexes with CD147 at the cell surface of cancer cell lines [ xref , xref ], which is indicative of the pivotal and complex role CD147 plays in KRas-driven tumors."
sparser
"oHA induce PTEN expression ( xref ), inhibit CD44 clustering on the plasma membrane, and block the interaction of CD44 with Emmprin, which is elevated in a variety of carcinomas (see Chapter 12)."
reach
"CD44 can bind EMMPRIN as well as MCT1 and MCT4 on the cell surface."
sparser
"As CD147 expression was significantly associated with the expression of PTTG and CD44v6, patients were divided into subgroups according to the combined expression of these EMT-associated markers to detect whether the prediction of ESSC prognosis was more accurate."
VCAN affects CD44
1 5 | 17 1
1 5 | 17 1
sparser
"CD44 binds to both versican and MT1-MMP, which is able to cleave CD44."
sparser
"The short V3 isoform contains the G1 and G3 terminal domains of versican that may potentially interact directly or indirectly with the hyaluronan receptor CD44 and the EGFR, respectively."
sparser
"HA–versican complexes interact with CD44 expressed by leukocytes, thereby promoting the infiltration of inflammatory cells and thus sustain inflammation in reactive stroma."
sparser
"In addition, versican binds with CD44 through its GAG chains or G1 hyaluronan binding domain to promote cell proliferation, migration and adhesion, and enhance the spread of tumors and inflammation ( xref – xref )."
sparser
"Enhanced CD44 expression is associated with CD26 and versican in Karpas 299."
omnipath
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omnipath
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omnipath
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omnipath
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omnipath
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hprd
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sparser
"Versican interacts with CD44 through the link module domain present on the amino-terminal end of CD44 [20] ."
sparser
"Our data suggest that induction of increased ovarian cancer cell migration or invasion potential by stromal VCAN may be mediated through binding of VCAN to CD44, which subsequently activates the NF-κB and JNK signaling pathways in ovarian cancer cells and increases CD44, HMMR, and MMP9 production."
reach
"Upregulated genes were those that encode for integrin (ITGA6), basement membrane laminins (LAMB3, LAMA1, and LAMC1), membrane proteins that mediate cell-to-cell and cell-to-matrix interactions (CTNNA1, VCAN, CD44, and THBS2), and inhibitor of the matrix metalloproteinases (TIMP3)."
sparser
"CSPG2 also binds to the cell surface protein CD44 [ xref ], another adhesion molecule, which was up-regulated 2.5-fold in our assay."
sparser
"Further, we do not present data to show a direct link or physical interaction between versican and CD44 in VICs."
sparser
"CSPG2 also binds to the cell surface protein CD44 [72], another adhesion molecule, which was up-regulated 2.5-fold in our assay."
sparser
"The extracellular matrix molecules versican and hyaluronic acid interact with CD44 and serve a pivotal role in OC metastasis ( xref )."
sparser
"In particular, because versican binds to both hyaluronan and CD44, it is possible that the three may form complexes together and stabilize the CD44-dependent interactions of inflammatory cells."
sparser
"Extracellular matrix molecules including versican and hyaluronan which interacts with CD44 have been shown to play key roles in ovarian cancer metastasis [ xref ]."
sparser
"The interaction of the anti-adhesion molecule versican with hyaluronan and CD44 promotes expansion of the pericellular matrix."
sparser
"The interaction of versican with several binding molecules such as hyaluronan and CD44 promotes expansion of the pericellular matrix [ xref ]."
sparser
"These results demonstrate that versican is essential for matrix assembly involving hyaluronan and that diminished versican deposition increases free hyaluronan fragments that interact with CD44 and increase phosphorylation of ERK1/2, leading to cellular senescence."
sparser
"Versican, which binds to HA, can also bind to CD44 ( xref ) via CS GAGs, suggesting that both versican and HA may stabilize CD44-dependent interactions and subsequent CD44-dependent signaling in inflammatory cells."
SPP1 affects ITGB1
1 1 15 | 3 3
SPP1 binds ITGB1.
1 1 12 | 3 3
1 1 11 | 3 3
omnipath
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omnipath
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omnipath
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omnipath
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sparser
"In previous reports, LAMB3 is overexpressed in PTC upon microarray analysis. xref Moreover, LAMB3 can be aberrantly upregulated by promoter demethylation and induce gastric cancer. xref Furthermore, LAMB3 is related to lymphatic metastasis in lung cancer and affects the migration and invasion capacity in lung cancer cell lines. xref In esophageal squamous cell carcinoma, the expression of LAMB3 is significantly associated with the COL7A1 gene, which is useful for predicting the malignant properties of esophageal squamous cell carcinoma. xref Besides, in the model of human epidermal carcinogenesis, LAMB3 activates PI3K through interactions with collagen VI. xref Some researchers found that osteopontin and LAMB3 can bind to ITGB1, which are receptors for cellular adhesion to the ECM and affect adhesion in the microenvironment to enhance the migration and invasion of highly metastatic cells. xref These studies indicated that LAMB3 is an important gene associated with PTC that may affect the tumorigenesis and progression of different tumors."
sparser
"Osteopontin, LAMB3 and ITGB1 Expression Levels in Lung Cancer Are Associated with Advanced Clinical Stage, Histological Grade, and Lymph Node Metastasis."
sparser
"We found that the expression levels of osteopontin, LAMB3 and ITGB1 were significantly associated with lymph node metastasis, as these levels were significantly higher in lung cancer patients with lymphatic metastasis than in those without lymphatic metastasis."
omnipath
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omnipath
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omnipath
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reach
"Furthermore, these 3 genes interact with each other; osteopontin and LAMB3 can both bind to ITGB1, receptors for cellular adhesion to the extracellular matrix and affect adhesion in the microenvironment to enhance the migration and invasion of highly metastatic cells."
reach
"XREF_BIBR Some researchers found that osteopontin and LAMB3 can bind to ITGB1, which are receptors for cellular adhesion to the ECM and affect adhesion in the microenvironment to enhance the migration and invasion of highly metastatic cells."
reach
"In order to identify the interaction between SPP1 and ITGB1, we designed a co-immunoprecipitation experiment."
biogrid
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hprd
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omnipath
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omnipath
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SPP1 binds ITGAV and ITGB1. 1 / 1
1 |
omnipath
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SPP1 activates ITGB1.
3 |
SPP1 activates ITGB1. 3 / 3
3 |
omnipath
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omnipath
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omnipath
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TNF affects INSR
1 | 9 11
TNF binds INSR.
| 7 1
| 7 1
sparser
"TNF effect on IRS-1 in Fao hepatoma cells was not associated with a significant reduction in insulin receptor tyrosine kinase activity as measured in vitro but impaired the association of IRS-1 with phosphatidylinositol 3-kinase, localizing TNF impact to IRS-1."
sparser
"A non-TNFi biologic agent may hence be a preferential next-line treatment for TNF-IR patients."
sparser
"The HIRMAb-TNFR fusion protein binds both the HIR and TNFα with low nM affinity."
sparser
"Actual and potential interactions between cell receptor signaling pathways (receptor cross-talk): interaction between TNF-α and the insulin receptor."
reach
"Actual and potential interactions between cell receptor signaling pathways (receptor cross-talk) : interaction between TNF-alpha and the insulin receptor."
sparser
"The outcomes of 56 TNF-IR patients were analysed."
sparser
"To compare therapeutic efficacy of tumour necrosis factor inhibitor (TNFi) cyclers and non-TNFi switchers in patients with rheumatoid arthritis (RA) having inadequate response to previous TNFis (TNF-IR patients) using composite measures including imaging assessment with power Doppler ultrasonography (PDUS)."
sparser
"Donnahoo et al. [9] have shown that I–R-induced renal TNF production was associated with impaired renal function and TNF-binding protein restored creatinine clearance."
TNF dephosphorylates INSR.
| 7
TNF dephosphorylates INSR. 7 / 7
| 7
reach
"Insulin resistance is one of the first consequences of sustained inflammation, since pro inflammatory cytokines such as interleukins, and TNF-alpha abrogate insulin receptor phosphorylation and post-receptor action, leading to altered lipid storage, lipid spillover and dyslipidemia (Garbossa & Folli, 2017; Paniagua, 2016)."
reach
"TNF-alpha has been shown to induce the expression of SOCS-3 (Suppressor of cytokine signalling-3), which specifically inhibits insulin receptor phosphorylation [XREF_BIBR]."
reach
"TNF-alpha activates c-Jun N-terminal kinase (JNK) to phosphorylate and suppress the activity of insulin receptor (IR) substrate 1."
reach
"In addition, TNF-alpha mediates insulin resistance by reducing insulin receptor kinase activity, down-regulating insulin receptor substrate (IRS) -1 and GLUT-4 phosphorylation and activity, and inducing lipolysis 2."
reach
"Sequential studies showed that TNFalpha not only decreased the amount of (tyrosine) phosphorylation of the insulin receptor substrate (IRS) [13] but also initiated serine phosphorylation of IRS, which inhibited insulin signaling [14]."
reach
"Increased TNFalpha causes an adipocyte specific decrease in insulin receptor phosphorylation; decreased insulin receptor function; resistance to the antilipolytic effects of insulin; de-repression of adipocyte hormone sensitive lipase; increased, continuous lipolysis of the enlarged adipocyte TG mass; and a further increase in plasma LCFA."
reach
"Mechanistically, TNFalpha contributes to insulin resistance by inhibiting the activating phosphorylation of the insulin receptor and insulin receptor substrate 1 (IRS1) in muscle and adipose tissues [XREF_BIBR]."
TNF phosphorylates INSR.
1 | 2 3
TNF phosphorylates INSR. 6 / 6
1 | 2 3
bel
"Analysis of intestinal tissue in TNF-alpha-treated hamsters indicated impaired phosphorylation of insulin receptor-beta, insulin receptor substrate-1, Akt, and Shc and increased phosphorylation of p38, extracellular signal-related kinase-1/2, and Jun NH(2)-terminal kinase."
reach
"some of the insulin resistance induced by the p60 TNF Moreover, staurosporin, a non specific inhibitor of pro- receptor; treatment of hepatoma cells and 3T3-L1 adipo- tein kinase C, did not abrogate the ability of TNF to cytes with sphingomylinase or cell-permeable analogs of inhibit insulin stimulated phosphorylation in Fao hepa- Inhibition of IR Signaling by TNF 169 p80 ~ ~ TNFRI I [I TNFR IIII (~)."
sparser
"In the same adipocytes or surrounding skeletal muscle cells, TNF-α may increase serine phosphorylation of the insulin receptor and also of IRS-1 and possibly other proteins that mediate intracellular insulin signaling."
reach
"This is true for TNF-alpha, which acts on the insulin receptor and prevents the dephosphorylation of insulin receptor substrates, thus blocking receptor signaling and preventing glucose entry into the cell (insulin resistance)."
reach
"Tumor necrosis factor alpha (TNFalpha) or chronic hyperinsulinemia that induce insulin resistance trigger increased Ser/Thr phosphorylation of the insulin receptor (IR) and of its major insulin receptor substrates, IRS-1 and IRS-2."
sparser
"Furthermore, TNF-α induced serine phosphorylation of IR and IRS-1, and these effects were completely precluded by pretreatment with inhibitors of p38 MAPK."
THBS1 affects LRP1
1 4 | 7 9
1 4 | 7 9
sparser
"In addition, the TSP1 domain of CCN2 binds to LRP1, which acts as a co-repressor of the Frizzled receptor and downregulates Wnt signaling [ xref , xref ]."
reach
"Formation of the ANXA6, LRP1, and TSP1 complex was restricted to cancer associated fibroblasts (CAFs) and required physiopathologic culture conditions that improved tumor cell survival and migration."
reach
"Increased PDA aggressiveness was dependent on tumor cell mediated uptake of CAF derived ANXA6+ EVs carrying the ANXA6, LRP1, and TSP1 complex."
sparser
"If cell surface LRP1 is protected by an MMP/ADAM inhibitor, and TSP-1 transport to the cell surface simultaneously is stimulated by cell contact with β1 and β2 integrin ligands, TSP-1 associates heavily with LRP1 ( xref )."
sparser
"For example, a pro-migratory signal is generated when LRP1 binds and internalizes the complex of cell surface calreticulin and thrombospondin-1 in coronary artery endothelial cells ( xref , xref )."
sparser
"The N-terminal domain of TSP1 binds to the calreticulin-LRP1 receptor co-complex to signal down-regulation of cell adhesion and increased cell motility through focal adhesion disassembly."
sparser
"Moreover, the CRT mutations could also affect CRT binding to LRP1, thereby, disrupting the formation of the TSP1-CRT-LRP1 ternary complex for signaling the cellular activities ( xref )."
reach
"This is because TSP1, even when bound to VEGF, can bind to LRP1, increasing the number of anti-angiogenic receptor complexes, despite having a limited effect on the percentage of free or receptor bound VEGF."
reach
"Further, high affinity binding of TSP-1 to LRP likely results from the trimeric structure of TSP-1."
sparser
"Solid-phase binding assays confirmed that LRP bound to TSP1 and that the interaction was of high affinity (Kd = 5 nM)."
reach
"Although the NH 2 -terminal heparin binding domain of TSP binds LRP, and LRP mediates the endocytic degradation of TSP1 and 2, our analyses failed to demonstrate binding between LRP and the hep I sequence from the NH 2 -terminal heparin binding domain of TSP."
hprd
No evidence text available
reach
"This is because TSP1 binding to LRP1 leads to internalization, removing TSP1 from the tissue and influencing its availability to bind to other species."
reach
"Thus, LRP1 can bind, internalize, and degrade TSP1 through LRP1 binding to the NTD of TSP1."
reach
"For example, a pro migratory signal is generated when LRP1 binds and internalizes the complex of cell surface calreticulin and thrombospondin-1 in coronary artery endothelial cells."
reach
"These results indicate that TSP-1 binding to LRP-1 does not require prior or concomitant interaction with cell surface HSPG but suggest subsequent endocytosis requires high-affinity heparin binding."
sparser
"More importantly, the use of a system of astrocyte-neurons co-cultures indicated that astrocytes activated upon uPA/uPAR binding release thrombosponin-1 (TSP-1), and that the interaction between astrocytic TSP-1 and synaptic LRP1 promotes synaptic recovery in neurons that have suffered a hypoxic injury [ xref ]."
omnipath
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omnipath
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omnipath
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omnipath
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SIRPA affects PTPN6
1 4 | 16
SIRPA binds PTPN6.
1 4 | 12
1 4 | 12
sparser
"Poor association of SIRPα and PIR-B with SHP-1 was also observed by co-immunoprecipitation experiments fromlyn −/− macrophages ( xref )."
sparser
"BIT and PIR-B bind preferentially to substrate-trapping mutants of SHP-1 and are hyperphosphorylated in macrophages from motheaten viable mice, which express catalytically impaired forms of SHP-1, indicating that these proteins are SHP-1 substrates."
sparser
"LPS and poly(I : C) each induced the tyrosine phosphorylation of SHPS-1 through a Src family kinase and the association of SHPS-1 with SHP-1 and SHP-2."
sparser
"SHPS-1 tyrosine phosphorylation leads to recruitment of two phosphatases SHP-1 and SHP-2 that bind to SHPS-1 through their SH2 domains xref ."
sparser
"These results suggest that LPS or poly(I : C) induces tyrosine phosphorylation of SHPS-1 and the association of SHPS-1 with SHP-1 and SHP-2 in a manner dependent on a Src family kinase."
sparser
"This functional suppression is preceded by association of SHP-1 and SHP-2 with SIRP-α ITIMs, as well as inhibition of calcium mobilization and ERK activation."
biogrid
No evidence text available
hprd
No evidence text available
sparser
"Given that SHP-1 is highly expressed in macrophages and, at a much lower level, in epithelial or fibroblast cells, whereas SHP-2 is expressed in the opposite manner, it is possible that the dynamic interaction of SIRPα with SHP-1 and -2 is crucial for proper regulation of the MAPKs by LPS or some growth factors in cells derived from different tissues."
hprd
No evidence text available
sparser
"After Fcγ receptor cross-linking, Fgr becomes associated with the immunoreceptor tyrosine-based inhibition motif (ITIM)–containing receptor, SIRPα (a member of the signal-regulatory protein family, also known as Src homology 2 domain–containing protein tyrosine phosphatase [SHP] substrate 1 [SHPS-1], brain immunoglobulin-like molecule with tyrosine-based activation motifs [BIT], and P84) and potentiates the association of the phosphatase SHP-1 with SIRPα."
sparser
"After Fcgamma receptor cross-linking, Fgr becomes associated with the immunoreceptor tyrosine-based inhibition motif (ITIM)-containing receptor, SIRPalpha (a member of the signal-regulatory protein family, also known as Src homology 2 domain-containing protein tyrosine phosphatase [SHP] substrate 1 [SHPS-1], brain immunoglobulin-like molecule with tyrosine-based activation motifs [BIT], and P84) and potentiates the association of the phosphatase SHP-1 with SIRPalpha."
hprd
No evidence text available
hprd
No evidence text available
sparser
"As reported by others xref xref , SHP-1 was constitutively associated with SIRPα in both cells."
sparser
"The lung collectins also initiated rapid association of SHP-1 with SIRPα as shown by coimmunoprecipitation (Figure 3D) ."
sparser
"Fgr Associates with a Complex of the ITIM-containing Receptor SIRPα and the Phosphatase SHP-1 after FcγR Aggregation."
SIRPA activates PTPN6.
| 4
SIRPA activates PTPN6. 4 / 4
| 4
sparser
"Synaptic activation of SHP-1 phosphatase by CD47-SIRPα has been clear, but downstream targets and mechanisms in phagocytosis inhibition have remained unknown."
sparser
"Upon CD47 binding, SIRPA activates the phosphatase SHP-1 (ref. xref ), which inhibits the cytoskeleton-intensive phagocytosis of cells and large particles that are opsonized by antibody and complement among other antagonistic factors. xref , xref By this pathway, CD47 acts as a “Marker of Self” as originally described when CD47-deficient red cells were injected into control mice and found to be rapidly cleared by splenic macrophages. xref While marker of self capability has been examined in a variety of cell types and also synthetic beads whether such a signal would likewise function on a virus that is 100-fold smaller than a cell is unclear."
sparser
"The interaction of CD47 on he-matopoietic cells to SIRPα on macrophages is thought to prevent phagocytosis through an SIRPα-dependent activation of SHP-1 ( xref , xref , xref , xref )."
sparser
"The SIRPα activation of SHP-1 determines both the life span of individual RBCs and the number of these cells in the circulation ( xref , xref , xref , xref )."
NAMPT affects INSR
1 2 | 10 8
NAMPT binds INSR.
1 1 | 6 5
1 1 | 6 5
reach
"Several researchers, including Revollo and Moschen, have not been able to detect PBEF binding to IR."
sparser
"Although visfatin has insulin mimetic actions, the pro-inflammatory effects of visfatin are unlikely to be mediated via the insulin receptor; given the interaction of visfatin with the insulin receptor is questionable."
reach
"Visfatin binds to the insulin receptor at a site distinct from insulin and exerts hypoglycemic effect by reducing glucose release from hepatocytes and stimulating glucose utilization in peripheral tissues."
sparser
"Recently, Revollo et al. [19] demonstrated that visfatin did not exert insulin-mimetic effects and there has been no evidence supporting the direct binding of visfatin to the insulin receptor [20] , so the most controversial function assigned to this protein was its insulin-mimetic activity."
reach
"Visfatin binds to and activates the insulin receptor (IR), thereby exerting insulin-mimetic effects in various cell lines."
bel
"expression in plasma increases during the development of obesity;exerted insulin mimetic effects in cultured cells; binds to and activates the insulin receptor[visfatin]"
sparser
"The author argues that visfatin binds to insulin receptor and causes hypoglycaemia through the reduction of blood glucose by stimulating its utilization in adipocytes and myocytes as well as reducing its release from liver cells."
sparser
"Fukuhara ( xref ) found that PBEF binds to the insulin receptor, which then activates the phosphatidylinositol 3-kinase (PI3K) pathway and causes phosphorylation of AKT and mitogen-activated protein kinase (MAPK) ( xref )."
reach
"Visfatin binds to insulin receptor and was suggested to have insulin like effects."
reach
"Visfatin binds to and activates the insulin receptor (IR), leading to glucose homeostasis [16]."
omnipath
No evidence text available
sparser
"Visfatin serum levels might correlate with the serum parameters of glucose metabolism and insulin sensitivity if the insulin-like activity of visfatin has any physiological importance, and if visfatin binds to the insulin receptor without competing with insulin."
sparser
"Visfatin and insulin bind to the different sites of the same insulin receptor (Tilg and Moschen, xref )."
NAMPT phosphorylates INSR.
| 4 3
NAMPT phosphorylates INSR. 7 / 7
| 4 3
sparser
"In the same study, the authors demonstrated that visfatin phosphorylated the insulin receptor, insulin receptor substrate-1 (IRS-1) and -2 (IRS-2), PI3K, Akt and MAPK [ xref ]."
sparser
"We found that visfatin induced tyrosine phosphorylation of IR, IRS-1, and IRS-2."
reach
"In the same study, the authors demonstrated that visfatin phosphorylated the insulin receptor, insulin receptor substrate-1 (IRS-1) and -2 (IRS-2), PI3K, Akt and MAPK [XREF_BIBR]."
sparser
"In contrast others found that Nampt did not induce insulin receptor phosphorylation or downstream AKT activity when tested on several preadipocyte cell lines xref ."
sparser
"Furthermore, visfatin induced tyrosine phosphorylation of the insulin receptor, activated downstream insulin signaling pathways such as Erk-1, Akt, and p38 MAPK, and markedly increased the levels of TGFbeta1, PAI-1, type I collagen, and MCP-1 in both renal cells."
reach
"In contrast others found that Nampt did not induce insulin receptor phosphorylation or downstream AKT activity when tested on several preadipocyte cell lines XREF_BIBR."
reach
"Although insulin (10 nM) induced significant phosphorylation of the insulin receptor and the downstream signaling kinase Akt in each of these cell lines, equimolar concentrations of eNampt and visfatin failed to induce phosphorylation of either the insulin receptor or Akt."
NAMPT activates INSR.
1 |
NAMPT activates INSR. 1 / 1
1 |
omnipath
No evidence text available
IL1RN affects IL1R1
18 | 3
IL1RN binds IL1R1.
9 | 3
9 |
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
IL1B binds IL1R1 and IL1RN. 3 / 3
| 3
sparser
"On the mRNA level of MSC, we found IL1RN, which binds to IL1R on the cell surface with subsequent inhibition of the IL1beta signaling pathway, to be upregulated from a low basal level of expression upon stimulation with the PTC (318-fold) or IL1beta (107-fold) and to remain unchanged after stimulation with IL6, IL8, C3a and C5a in concentrations used in the “cocktail” ( xref )."
sparser
"The type I IL-1R binds IL-1α, IL-1β and the receptor antagonist IL-1Ra (reviewed in Ref. [65] )."
sparser
"In addition, IL-1R1 can be released into the extracellular space where, in its soluble form (sIL-1R1), it can also function as a soluble decoy receptor and prevent the binding of IL-1α, IL-1β, and IL-1Ra to membrane IL-1R1 ( xref )."
IL1RN inhibits IL1R1.
9 |
IL1RN inhibits IL1R1. 9 / 9
9 |
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
ADAM17 affects NOTCH1
2 17 | 1 1
ADAM17 binds NOTCH1.
2 10 | 1 1
2 10 | 1 1
hprd
No evidence text available
hprd
No evidence text available
reach
"Double immunofluorescence showed strong signals for Notch1 and TACE immunostaining, which were predominantly distributed in CD68 positive macrophages compared with control tissues.In the present study we provide evidence to support an association between Notch1, TACE and human AAA."
sparser
"This study reveals a novel effector-dependent mechanism, which involves interaction with the ADAM17 and Notch1 and activation of canonical Notch signaling pathway in monocytes, a primary target of E. chaffeensis , to modulate ERK1/2 and p38 MAPK pathways and regulate TLR2/4 expression ( xref )."
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
ADAM17 activates NOTCH1.
7 |
ADAM17 activates NOTCH1. 7 / 7
7 |
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
VEGFA affects PDGFRB
| 1 13 6
VEGFA binds PDGFRB.
| 9 4
| 5 4
sparser
"Several pathways inhibited by sunitinib have been implicated in the pathogenesis of breast cancer: for example, expression of VEGF-A, PDGF-AB, and PDGFR-β has been associated with poor prognosis [ xref - xref ]."
sparser
"Increased PDGFR-beta kinase activity is associated with elevated expression of VEGF-A and VEGF receptor-2, acting directly on endothelial cells and resulting in increased vessel formation."
sparser
"Tissue expressions of VEGFA, CD31, and PDGFRβ were associated with response, but their predictive value was not confirmed [ xref ]."
reach
"Second, the VEGFA induced cell proliferation may rely on both KDR and PDGFRbeta binding to VEGFA."
reach
"After VEGF-A 165 stimulation, PDGFR immunoprecipitation, and immunoblot analysis, a distinct association between VEGF-A and PDGFRalpha or PDGFRbeta was demonstrated (XREF_FIG)."
sparser
"We quantified the kinetics of the recent VEGF-A:PDGFRβ interaction for the first time with K D  = 340 pM."
reach
"First, the VEGFA induced proliferative stimuli may be dependent on the binding of VEGFA to PDGFRbeta as implied by the IOMM-Lee data."
reach
"VEGF-A 165 bound to both PDGFRalpha and PDGFRbeta."
sparser
"Increased PDGFRβ activity is associated with overexpression of VEGF-A and VEGFR-2, and results in increased sprouting, pericyte coating and vessel formation [ xref ]."
| 4
sparser
"VEGF-A binds to both PDGFRalpha and PDGFRbeta and induces tyrosine phosphorylation that, when inhibited, results in attenuation of VEGF-A-induced MSC migration and proliferation."
sparser
"It has been known that VEGF-A binds to both PDGFR-α and PDGFR-β and induces tyrosine phosphorylation ( xref )."
sparser
"VEGF-A binds to both PDGFRα and PDGFRβ and induces tyrosine phosphorylation that, when inhibited, results in attenuation of VEGF-A–induced MSC migration and proliferation."
sparser
"Having established by several methods that VEGF-A 165 –stimulated tyrosine phosphorylation of both PDGFRs, we went on to confirm VEGF-A 165 binding to cell surface PDGFRα and PDGFRβ using a cross-linking approach."
VEGFA phosphorylates PDGFRB.
| 1 4 2
VEGFA phosphorylates PDGFRB. 7 / 7
| 1 4 2
reach
"Moreover, VEGF-A has been shown to negatively regulate pericyte function by inhibiting PDGFR-beta phosphorylation through the formation of a nonfunctional VEGFR-2, PDGFR, and beta complex, which results in a reduction in vascular pericyte coverage [XREF_BIBR]."
sparser
"The VEGFA induced concentration-dependent PDGFRβ tyrosine phosphorylation comparable to PDGFB-induced PDGFRβ tyrosine phosphorylation."
rlimsp
"As shown in Figure 4C, the phosphorylation of PDGFRβ by VEGFA increased with increasing concentrations."
sparser
"PDGFB and VEGFA stimulated phosphorylation of PDGFRB and VEGFR2 in pericytes and BRAF WT/V600E -PTC, but not in BRAF WT/WT -PTC, which showed low levels of these receptors ( xref )."
reach
"As shown in XREF_FIG, the phosphorylation of PDGFRbeta by VEGFA increased with increasing concentrations."
sparser
"However, VEGF-A–induced PDGFRα and PDGFRβ tyrosine phosphorylation was clearly confirmed, highlighting that VEGF-A exerts its effect on MSCs by the stimulation of PDGFRs."
sparser
"In addition, gambogic acid suppressed the VEGFA-induced PDGFRβ tyrosine phosphorylation."
TGFB1 affects SDC4
| 20
TGFB1 increases the amount of SDC4.
| 10
TGFB1 increases the amount of SDC4. 10 / 10
| 10
reach
"To examine the involvement of MAPKs in the modulation of syndecan-4 mRNA expression by TGF-beta 1, vascular endothelial cells were pretreated with the MEK1 inhibitor PD98059, JNK inhibitor SP600125, or p38 MAPK inhibitor SB203580 and then stimulated with TGF-beta 1."
reach
"These results indicate that the early upregulation of syndecan-4 mRNA expression by TGF-beta 1 is mediated by Smad3, whereas Smad2 or Smad3 alone is not involved in the late downregulation of syndecan-4 mRNA expression by TGF-beta 1; the late downregulation of syndecan-4 core protein expression by TGF-beta 1 is mediated by Smad3."
reach
"The early upregulation and late downregulation of syndecan-4 mRNA expression by TGF-beta 1 were both not affected by siRNA mediated knockdown of Smad2."
reach
"Figure XREF_FIG shows the phosphorylation of MAPKs (ERK1/2, JNK, and p38 MAPK) and Smad2/3, which may be involved in the modulation of syndecan-4 expression by TGF-beta 1 as the downstream signaling pathways of the cytokine."
reach
"The late downregulation of syndecan-4 core protein expression by TGF-beta 1 was observed in cells treated with or without siRNA for Smad2, but this downregulation was reduced by siRNA for Smad3."
reach
"The results indicated that the siRNA mediated knockdown of both Smad2 and Smad3 diminished the late downregulation of syndecan-4 mRNA expression by TGF-beta 1, although the knockdown of just one could not diminish the downregulation."
reach
"They indicated that TGF-beta 1 upregulates syndecan-4 expression via the ALK5-Smad3-p38 MAPK pathway at the early stage, whereas downregulation of the expression occurs via the ALK5-Smad2/3 pathway."
reach
"These results and our data, which showed that the induction of endothelial syndecan-4 expression occurs in the early stage of the exposure to TGF-beta 1, suggest that the upregulation of endothelial syndecan-4 expression by TGF-beta 1 may be a defense mechanism against an acute injury to vascular endothelial cells."
reach
"These results suggest that the late downregulation of syndecan-4 expression by TGF-beta 1 is mediated by Smad2/3 at the mRNA level and by Smad3 at the protein level."
reach
"Specifically, the downregulation of syndecan-4 expression by TGF-beta 1 is mediated by the interaction of Smad3 with Smad2 at the mRNA expression level, whereas only Smad3 is crucial at the core protein expression level."
TGFB1 decreases the amount of SDC4.
| 10
TGFB1 decreases the amount of SDC4. 10 / 10
| 10
reach
"The late downregulation of syndecan-4 core protein expression by TGF-beta 1 was observed in cells treated with or without siRNA for Smad2, but this downregulation was reduced by siRNA for Smad3."
reach
"These results suggest that the late downregulation of syndecan-4 expression by TGF-beta 1 is mediated by Smad2/3 at the mRNA level and by Smad3 at the protein level."
reach
"Syndecan-4 mRNA expression was upregulated after 6h and downregulated after 24h by TGF-beta 1."
reach
"In addition, the results again indicated that siSmad3 with or without siSmad2 diminished the decrease in syndecan-4 core protein expression by TGF-beta 1 after a 24-h treatment."
reach
"On the other hand, siRNA mediated knockdown of Smad3 diminished the upregulation of syndecan-4 mRNA expression by TGF-beta 1, suggesting that Smad3 is a member of the signaling pathway that mediates the TGF-beta 1 -induced upregulation of syndecan-4 expression."
reach
"This result indicates that Smad3 is involved in the late downregulation of syndecan-4 core protein expression by TGF-beta 1."
reach
"Recently, we found that TGF-beta 1 first upregulates and then downregulates the expression of syndecan-4, a transmembrane heparan sulfate proteoglycan, via the TGF-beta receptor ALK5 in the cells."
reach
"Specifically, the downregulation of syndecan-4 expression by TGF-beta 1 is mediated by the interaction of Smad3 with Smad2 at the mRNA expression level, whereas only Smad3 is crucial at the core protein expression level."
reach
"These results indicate that the early upregulation of syndecan-4 mRNA expression by TGF-beta 1 is mediated by Smad3, whereas Smad2 or Smad3 alone is not involved in the late downregulation of syndecan-4 mRNA expression by TGF-beta 1; the late downregulation of syndecan-4 core protein expression by TGF-beta 1 is mediated by Smad3."
reach
"The early upregulation and late downregulation of syndecan-4 mRNA expression by TGF-beta 1 were both not affected by siRNA mediated knockdown of Smad2."
SPP1 affects ITGAV
2 1 3 9 | 5
SPP1 binds ITGAV.
1 1 3 7 | 5
1 2 3 | 5
omnipath
No evidence text available
omnipath
No evidence text available
reach
"XREF_BIBR SPP1 binds ITGAV : ITGB3 and possibly ITGA5 : ITGB1integrin heterodimers to induce focal adhesion assembly, a prerequisite for adhesion and migration of oTr cells, through activation of (1) p70S6K via crosstalk between mTOR and MAPK pathways; (2) mTOR, PI3K, MAPK3/MAPK1 (ERK1/2), and MAPK14 (P38) signaling to stimulate oTr cell migration; and (3) focal adhesion assembly and myosin II motor activity to induce migration of oTr cells."
reach
"For ovine trophectoderm cells, SPP1 binds ITGAV : ITGB3 and perhaps ITGA5 : ITGB1 to induce focal adhesion assembly, a prerequisite for adhesion and migration through activation of : 1) ribosomal protein S6 kinase (RPS6K) via crosstalk between MTOR and MAPK pathways; 2) MTOR, phosphatidyl inositol kinase 3 (PIK3), MAPK3/MAPK1 (ERK1/2) and MAPK14 (P38) signaling to stimulate trophectoderm cell migration; and 3) focal adhesion assembly and myosin II motor activity to induce migration of trophectoderm cells."
biogrid
No evidence text available
reach
"ITGAV (alpha v integrins) bind SPP1 (osteopontin) to support trophoblast cell adhesion."
reach
"It has been shown that ITGB3 and ITGAV subunits together bind to SPP1 to generate stable adhesions between the maternal-fetal interface in pigs after the initial attachment of conceptus trophoblast to the endometrial luminal epithelium XREF_BIBR, XREF_BIBR."
reach
"FN1 and SPP1 bind to ITGAV through a RGD containing domain, so their interaction can be blocked by a synthetic peptide GRGDS [XREF_BIBR, XREF_BIBR]."
hprd
No evidence text available
hprd
No evidence text available
omnipath
No evidence text available
SPP1 binds ITGAV and ITGB3. 2 / 2
2 |
omnipath
No evidence text available
omnipath
No evidence text available
SPP1 binds ITGAV and ITGB6. 2 / 2
1 1 |
hprd
No evidence text available
omnipath
No evidence text available
SPP1 binds ITGAV bound to ITGB3. 1 / 1
1 |
signor
"Among others, vitronectin (vn)1- (11, 13, 14) and osteopontin (opn)-coated (15-20) substrates have been shown to support cell adhesion via avb3."
SPP1 binds ITGAV and ITGB1. 1 / 1
1 |
omnipath
No evidence text available
SPP1 activates ITGAV.
1 2 |
SPP1 activates ITGAV. 2 / 2
2 |
omnipath
No evidence text available
omnipath
No evidence text available
SPP1 activates ITGAV bound to ITGB3. 1 / 1
1 |
signor
"Among others, vitronectin (vn)1- (11, 13, 14) and osteopontin (opn)-coated (15-20) substrates have been shown to support cell adhesion via avb3."
IL10 affects TLR4
| 2 13 5
IL10 binds TLR4.
| 13 2
| 10 2
sparser
"None of the other IL10 or TLR4 or the CRP SNPs was associated with risk (data not shown)."
sparser
"The enhancement of antibody responses was associated with BG-induced production of IL-10 through TLR4 pathway."
sparser
"Blocking of TLR4 is associated with down-regulation of the release of IL-8 and IL-10 and with anti-apoptotic behavior, which allows the fungus to persist as it sees fit."
sparser
"The suppression phenotype induced by Wnt5a is associated with the induction of interleukin-10 and the inhibition of the Toll-like receptor 4-nuclear factor κB signaling pathway ( xref )."
sparser
"In addition, TLR2 -/- and TLR4 -/- DCs confirmed the association of IL-10 production with TLR2 and TLR4 signaling; IL-10 production synergistically increased when both TLR4 and TLR2 were involved."
sparser
"LPS-induced up-regulation of TLR4 was associated with enhancement of IFN-γ release and abrogation of IL-10."
reach
"In conclusion we found an association between IL10, FAS, and TLR4 in the donor and IL18 in the recipient and an increased risk of developing aGvHD in transplanted children."
sparser
"Decreased LPS-induced IL-12(p70) and IL-10 responses were associated with the TLR4 (Asp299Gly) polymorphism and independently with asthma, especially atopic asthma."
sparser
"Intestinal microbiota composition before peroral association of TLR4 deficient IL10 −/− mice with multi-drug resistant P. aeruginosa ."
reach
"The key and novel findings include : 1) Both hepatocyte and myeloid cell TLR4 is required for maximal I/R associated injury; 2) DC TLR4 -/- worsens injury after I/R and is associated with decreased IL-10 expression; 3) Hepatocytes are a major source of circulating HGMB1 after I/R; 4) Hepatocytes respond to hypoxia with increased phosphorylation of MAP kinases, JNK and p38, in a TLR4 dependent fashion; 5) Hypoxia induced HMGB1 release from hepatocytes is dependent on the function of JNK."
sparser
"Intestinal colonization properties of multi-drug resistant P. aeruginosa following peroral association of TLR4 deficient IL10 −/− mice."
sparser
"Hence, TLR4 deficiency of PA-colonized IL10 –/– mice is associated with less distinct innate as well as adaptive immune cell responses in the large intestines."
TLR4 binds TNF and IL10. 3 / 3
| 3
sparser
"Moreover, using the co-expression data of gene pairs, the data showed that the co-expression of IL1B and TNFA (under pathophysiological conditions), the co-expression of TNFA and IL4 (under physiological conditions), and the co-expression of TNFA and IL10 (under pathophysiological + physiological conditions) was strongly associated with TLR4 expression."
sparser
"The results showed that TNFA ( d  = 0.61) and TLR4 ( d  = 0.34) were negatively associated with IL10 expression under basic conditions ( P  < 0.05)."
sparser
"Failure otitis media recovery in TLR2 −/− and TLR4 −/− mice is associated with decreased TNF and enhanced IL-10 expression, suggesting that abnormalities of innate immunity may contribute to otitis media in humans and that innate immune pathways could be targets of otitis media therapy."
IL10 increases the amount of TLR4.
| 2 3
IL10 increases the amount of TLR4. 5 / 5
| 2 3
reach
"Neutrophils produced a significant increase of IL-8, IL-1beta and TNF-alpha after 3, 6 and 24 h of H. pylori challenge, respectively, whereas IL-10 increased after 24 h. Helicobacter pylori challenge increased TLR2 and TLR4 expression; and antibodies against TLR2 and TLR4 diminished significantly the H. pylori induced production of IL-8 and IL-10."
isi
"Preimplantation kidney biopsies from ECD (n=41) and SCD (n=39) were evaluated for real-time quantitative polymerase chain reaction (qPCR) gene expression using the TaqMan Gene Expression Array Plates system for genes TLR4, HMGB1, NFK-beta, MyD-88, INF-gamma, IL1-beta, TNF-alpha, CASP1, ICAM-1, IL-10, HO-1, HIF-1, MCP-1, TGF-beta, TRIF, TRAM, IRF-3, RIP1, INFbeta-1 and NLRP3."
reach
"Toll like receptor (TLR) 2 and TLR4 mRNA, as well as TLR4 surface expression, were significantly up-regulated by IL-10 in adherent cells."
isi
"We recruited 80 patients to measure the expression of HMGB1, IL-17, and IL-10; 55 patients were recruited to measure the expression of TLR2 and TLR4 in monocyte and CD1c+dendritic cells, and 30 volunteers were included as controls."
reach
"Binding sites for CREB have been identified in the IL-10 promoter, and mutation of the MSK phosphorylation site, Ser133, in CREB reduced TLR4 induced IL-10 transcription."
GRN affects TNFRSF1A
1 | 15 4
GRN binds TNFRSF1A.
| 14 4
| 14 4
sparser
"TNFR 1 binding to PGRN’s F-A-C domain prevents the activation of the NF-KB pathway by TNFα and the resultant chondroprotective inhibition of the degradation of COMP by ADAMTS-7."
reach
"Based on the confirmation of PGRN binding to TNFR1 and TNFR2 in HeLa cells, we demonstrated that TNFR2 was needed for PGRN stimulated mTOR signaling in cervical cancer cells."
sparser
"PGRN binds to TNFR1 and activates ERK and PI3K/AKT pathways to competitively inhibit TNF-α activated NF-κB inflammatory pathway [ xref , xref , xref , xref , xref ]."
reach
"Importantly, PGRN directly binds to TNFR1 and TNFR2 in many cell types XREF_BIBR XREF_BIBR XREF_BIBR, here, we also found that TNF induced CXCL9 and CXCL10 depends on TNFR1, and PGRN 's inhibitory effect upon CXCL10 and CXCL10 is mainly mediated through TNFR1 (XREF_FIG)."
sparser
"PGRN binds to TNFR1 with binding affinity comparable to that of TNFα, and binds to TNFR2 with much higher affinity than TNFα xref ."
reach
"Furthermore, treatment of mice with TNF receptor (TNFR) -1 blocking peptide-Fc, a TNFR1 blocking peptide-Fc fusion protein to competitively block the interaction of PGRN and TNFR1, resulted in the restoration of systemic insulin sensitivity and the recovery of autophagy and insulin signaling in liver."
reach
"It was reported that PGRN can competitively bind to TNFR1 and TNFR2 and prevents TNFalpha mediated inflammation XREF_BIBR."
sparser
"This result revealed that in the interaction between PGRN and TNFR1, the CRD3 domain of TNFR1 was the determinant for the binding, whereas CRD2 played an important role in enhancing this binding to a substantial degree."
sparser
"Surface plasmon resonance analysis revealed that PGRN bound to both TNFRI and TNFRII and with greater affinity than TNF to TNFRII xref , xref ."
sparser
"The binding of PGRN with TNFR1 and TNFR2 in HeLa cells was confirmed by Co-immunoprecipitation (Co-IP) assays (Figure xref )."
sparser
"As summarized in xref , the successful demonstration of the binding of PGRN to TNFR1 and TNFR2 in surface plasmon resonance is highly dependent upon the chips used."
sparser
"However, despite the strong affinities of the PGRNTNFR1 and PGRN–TNFR2 interactions, excessive high concentrations of PGRN (75,000 ng/ml = 833 nM) were required to see inhibitory effects on binding of sTNF to TNFR1 and TNFR2 and this although TNF receptor activities were inhibited at much lower PGRN concentrations (Table xref )."
sparser
"PGRN binds both TNFR1 (which is broadly expressed) and TNFR2 (which is primarily expressed by leukocytes) in a dose-dependent manner ( xref )."
sparser
"The unexpected interaction between progranulin (PGRN) and both TNFRI and TNFRII is particularly interesting in the context of arthritis‐associated bone pathology."
sparser
"Importantly, PGRN directly binds to TNFR1 and TNFR2 in many cell types xref xref xref , here, we also found that TNF-induced CXCL9 and CXCL10 depends on TNFR1, and PGRN’s inhibitory effect upon CXCL10 and CXCL10 is mainly mediated through TNFR1 ( xref )."
sparser
"TNF-α-mediated activation of NF-κB signalling pathway is known to play an important role in the pathogenesis of OA. xref The finding that PGRN directly binds to TNFR1 and TNFR2, and prevents TNF-mediated inflammation in various conditions xref xref xref has been independently confirmed by several laboratories. xref xref xref – xref Additionally, this finding was further confirmed and extended by the recent report that PGRN directly bound to TNFRSF25 (DR3) and inhibited TNF-like ligand 1A (TL1A) activity. xref PGRN binds to TNFR2 with higher binding affinity than to TNFR1, xref xref and TNFR2 has been demonstrated to be critical for PGRN activities."
sparser
"Recently, two other groups independently reproduced the binding of PGRN to TNFR1 and TNFR2, and inhibitory effect of this binding on TNF-α-induced effects [ xref , xref ]."
sparser
"Our results obtained in highly sensitive cellular binding studies with two commercially available PGRN samples and GpL-tagged and untagged PGRN containing cell culture SNs also gave no evidence for high affinity and/or competitive PGRN binding to TNFR1 and TNFR2."
GRN inhibits TNFRSF1A.
1 | 1
GRN inhibits TNFRSF1A. 2 / 2
1 | 1
sparser
"This hyperphosphorylation prevents direct inhibition of TNFR1, TNFR2 and DR3 by PGRN, alters the conversion of PGRN, and is strongly associated with the occurrence of neutralizing, proinflammatory PGRN-antibodies, indicating immunogenicity of this alternative secondary modification."
signor
"Collectively, these findings demonstrate that pgrn is a ligand of tnfr, an antagonist of tnf signaling, and plays a critical role in the pathogenesis of inflammatory arthritis in mice."
MIF affects CD44
| 13 6
| 13 6
sparser
"It has been reported that MIF mediates many of its inflammatory properties by interacting with the CD74-CD44 MIF receptor complex ( xref )."
sparser
"It was previously shown that in macrophages, MIF binds to a complex of CD74 and CD44, resulting in initiation of a signaling pathway."
reach
"The MIF, CD74, and CD44 complex is believed to regulate the signaling of leukocyte migration to sites of inflammation."
sparser
"Interestingly, both MIF, CD74, and CD44 have been associated with tumor progression and metastasis ( xref – xref )."
sparser
"It was previously shown that in macrophages, MIF binds to a CD74-CD44 complex."
sparser
"We concluded that the interactions of CD74 with MIF and CD74 with CD44 could be a potential tumour marker for breast cancer cells."
sparser
"ILF immunoprecipitation followed by Western blot analysis was performed to identify an association of MIF with CD74 and/or CD44."
sparser
"We developed a tentative model of MIF- CD44- CD74 interaction."
sparser
"In addition, MIF also binds to the receptor CD44 and the co-receptor CD74."
sparser
"We recently documented that MIF associates with CD74 and CD44 in an urothelial cancer cell line [ xref ] and in an in vivo model of bladder inflammation [ xref ] suggesting that the effects of MIF on the bladder are mediated by interaction with both CD74 and CD44."
sparser
"However, human benign prostate hyperplasia epithelial cells (BPH-1) and PrEC prostate cancer cells do not express CD74 on the cell surface, so for this reason, both cells do not interact with MIF and CD44 [ xref ]."
sparser
"MIF interacts with soluble CD44 in the ILF and it is available to bind with CD74 in the bladder to exert proinflammatory effects."
reach
"MIF interacts with soluble CD44 in the ILF and it is available to bind with CD74 in the bladder to exert proinflammatory effects."
reach
"We recently documented that MIF associates with CD74 and CD44 in an urothelial cancer cell line [XREF_BIBR] and in an in vivo model of bladder inflammation [XREF_BIBR] suggesting that the effects of MIF on the bladder are mediated by interaction with both CD74 and CD44."
reach
"Given the demonstrated binding of MIF to the CD74 and CD44 complex, an interference with the perception of contact inhibition signals by CD44 seems intriguing."
sparser
"Anti-MIF antibody prevents interaction of MIF with soluble CD44 again blocking MIF signal transduction."
sparser
"The cells also expressed CD44, the hyaluronic acid receptor that has been implicated in MIF cell surface binding and signaling, but CD44 does not directly bind MIF nor can it elicit MIF-mediated responses in the absence of CD74."
reach
"MIF and D-DT, which both bind to the CD74 and CD44 receptor complex, are differentially expressed in adipose tissue and have distinct roles in adipogenesis."
reach
"The soluble CD44 and MIF complex interacts with CD74 to induce activation of cytokine production and cell proliferation presumably through ERK1/2 [XREF_BIBR]."
IL1B affects TLR4
3 | 10 6
IL1B binds TLR4.
| 10 6
| 8 6
sparser
"Since previous reports showed that the production of IL-1β is associated with TLR2 and TLR4 pathway [ xref ], we thus speculated that the inhibitory effect of ischemic postconditioning on the IL-1β production might be correlated with inhibition of TLR2 or TLR4 pathway."
sparser
"Elevated production of IL-1β from monocytes following TLR-2, TLR-4 and TLR-7/8 stimulation was associated with reduced odds of TB recurrence."
sparser
"The four SNPs that had significant single SNP associations with either IL-1α (IL-1RAP rs6444435) or IL-1β (IL-1R2 – rs4851527 and rs4851531, IL-1RAP – rs6765375) in AA were tested for interaction effects with the two SNPs in TLR4 (rs1554973 and rs7856729) that were associated with IL-1α and IL-1β in European Americans in a previous study ( xref [pd1] )."
sparser
"Although HMGB1 has been shown to stimulate pro-inflammatory cytokine production xref , xref , xref , it is unlikely that HMGB1 interacts with TLR4 to promote IL-1β production and cell death in our system."
sparser
"Both types of glial cells release Tnf and produce the immature form of Il1b in a Tlr4-dependent manner in the presence of Hsp70."
sparser
"Functional studies revealed that this NFKBIA rs2233406 genotype was associated with elevated TLR4-mediated IL-1β production."
reach
"The gram negative bacterial cell wall component LPS and IL-1beta, which bind to Toll Like Receptor 4 (TLR4) and the IL-1 Type-I receptor (IL-1RI), respectively, play a pivotal role in this process."
sparser
"The gram-negative bacterial cell wall component LPS and IL-1β, which bind to Toll-Like Receptor 4 (TLR4) and the IL-1 Type-I receptor (IL-1RI), respectively, play a pivotal role in this process."
reach
"Our results also propose that IL-1beta may bind to TLR4, in addition to its cognate receptor IL-1R1, to exert its inflammatory effects in microglia, which is a novel finding and needs to be further explored."
sparser
"Our results also propose that IL-1β may bind to TLR4, in addition to its cognate receptor IL-1R1, to exert its inflammatory effects in microglia, which is a novel finding and needs to be further explored."
reach
"The association between precancerous gastric lesions and serum pepsinogens, serum gastrin, vascular endothelial growth factor, serum interleukin-1 Beta, serum toll like receptor-4 levels and Helicobacter pylori Cag A status."
reach
"The four SNPs that had significant single SNP associations with either IL-1alpha (IL-1RAP rs6444435) or IL-1beta (IL-1R2 - rs4851527 and rs4851531, IL-1RAP - rs6765375) in AA were tested for interaction effects with the two SNPs in TLR4 (rs1554973 and rs7856729) that were associated with IL-1alpha and IL-1beta in European Americans in a previous study."
reach
"6 Binding of IL-1beta to IL-1R or LPS to TLR4 causes recruitment of adopter proteins such as MyD88, IRAK, and TRAF6 to the receptor."
reach
"The aim of this study was to investigate the association between serum pepsinogens, serum gastrin, serum vascular endothelial growth factor, serum interleukin-1 Beta, serum toll like receptor-4 levels and Helicobacter pylori Cag A status in patients with various gastric precancerous lesions."
TLR4 binds TNF and IL1B. 1 / 1
| 1
sparser
"The second principal component indicates that the high expression of TLR-4 was associated with high expression of pro-inflammatory cytokines TNF-α and IL-1β ."
TLR4 binds IL1B and IL1R1. 1 / 1
| 1
sparser
"IL-1β or LPS binding to IL-1R or TLR4, respectively, results in the rapid association of the adaptor molecule Myd88 with the receptors and subsequent recruitment of the kinases IRAK1 and IRAK4. xref Activation and phosphorylation of IRAK kinases leads to the recruitment of the E3 ubiquitin ligase TRAF6 which undergoes K63-linked autoubiquitination and serves as a scaffold to recruit TAK1 and IKK kinases through binding to TAB2/3 and NEMO, respectively. xref TAK1 is subsequently activated and triggers IKK/NF-κB and mitogen-activated protein kinase/c-Jun N-terminal kinase activation. xref "
IL1B increases the amount of TLR4.
3 |
Transcriptionally active IL1B increases the amount of TLR4. 3 / 3
3 |
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
VEGFA affects NRP2
8 | 7 3
VEGFA binds NRP2.
4 | 7 3
4 | 4 3
sparser
"Neuropilin-2 is also able to bind VEGF-A 165 , but unlike neuropilin-1, it also interacts with VEGF-A 145 [ xref , xref , xref ]."
reach
"VEGF-A 165 but not VEGF-A 121 interacts with neuropilin-1 (NRP-1) and neuropilin-2 (NRP-2), which are cell surface transmembrane glycoprotein receptors [XREF_BIBR]."
reach
"Accordingly, the disruption of NRP1 or NRP2 binding to VEGF-A (165) or HGF with a blocking antibody, decreased the proliferation and migration of endothelial cells."
reach
"The KKK and QNG L3-loop produces the largest net gain in Nrp2 binding to VEGF-A."
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
sparser
"NRP2 specifically binds VEGF-A and VEGF-C, although the biological relevance of these interactions in human endothelial cells is poorly understood."
sparser
"Interestingly, in breast cancer, HH–GLI signaling was triggered in an autocrine manner by stimulation of the VEGF receptor neuropilin-2 (NRP2), xref whose expression in NSCLCs has been linked to unfavorable outcomes. xref , xref , xref In its role as a VEGF receptor, NRP2 specifically binds both VEGFA and VEGFC, xref and VEGF/NRP signaling impacts the biology of stem-like tumor cells in various types of cancer. xref , xref , xref We wondered whether oncogenic NRP2/ERK signaling might be the upstream cause of the noncanonical GLI1 activity in LAC cells."
sparser
"On the other hand, Nrp-2 can bind class III semaphorins and VEGF proteins (VEGF-A 165 , VEGF-A 145 , and VEGF-C)."
VEGFA binds NRP1 and NRP2. 3 / 3
| 3
sparser
"VEGF-A 165 binding to NRP1 and NRP2 is important for migration of endothelial cells."
sparser
"Among many downstream factors of VEGFA [ xref , xref ], we found it was VEGFR2 rather than NRP1 and NRP2 associated with VEGFA in our study."
sparser
"However, this interaction alone is insufficient to explain the marked difference in potency of VEGF-A binding to Nrp1 and Nrp2, therefore other molecular determinants of this preferential binding must exist."
VEGFA activates NRP2.
4 |
VEGFA activates NRP2. 4 / 4
4 |
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
TNF affects GPR68
7 | 10
TNF increases the amount of GPR68. 10 / 10
| 10
reach
"OGR1 expression induced by TNF, PMA, or LPS was prevented by treatment with PI-3 (Akt1/2), MAP, and PKC inhibitors and with NF-kappaB inhibitors AICAR, BAY-11-7082, CAY10512, and SC-514."
reach
"TNF upregulates OGR1 expression for short periods (6-12 h); however, the effect is not sustained for longer periods, after 24 to 48 hours OGR1 expression returns to basal levels."
reach
"XREF_BIBR In thecurrent study we show that hypoxia enhances TNF mediated induction of OGR1 expression, and that this effect was reversed by NF-kappaB inhibition under hypoxic conditions."
reach
"XREF_BIBR, XREF_BIBR We show that hypoxia enhances TNF mediated induction of OGR1 expression."
reach
"The enhancement of TNF- and hypoxia induced OGR1 expression under low pH points to a positive feed-forward regulation of OGR1 activity in acidic conditions, and supports a role for OGR1 in the pathogenesis of IBD."
reach
"OGR1 expression is induced in cells of human macrophage lineage and primary human monocytes by TNF."
reach
"We previously reported that OGR1 expression was induced in cells of human macrophage lineage and primary human monocytes by TNF and that NF-kappaB inhibition reversed the induction of OGR1 mRNA expression by TNF."
reach
"NF-kappaB inhibition reverses the induction of OGR1 expression by TNF."
reach
"In a previous study we reported that TNF treatment induced OGR1 expression in MM6 cells and primary human and murine monocytes, and that this process was reversed by the NF-kappaB inhibitors MG132, AICAR, BAY-11-7082, CAY10512, and SC-514 in MM6 cells."
reach
"The stimulation of OGR1 expression by TNF and hypoxia, and subsequent pH sensing activity, may play a role in IBD pathogenesis."
Transcriptionally active TNF increases the amount of GPR68. 7 / 7
7 |
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
TNF affects F3
10 | 4 3
TNF increases the amount of F3.
10 |
Transcriptionally active TNF increases the amount of F3. 10 / 10
10 |
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
TNF binds F3.
| 4 3
TNF binds F3. 7 / 7
| 4 3
sparser
"However, addition of calcitriol or paricalcitol blunted the TNF-α-induced TF expression and activity (2.01 ± 0.24 and 1.32 ± 0.14 vs. 3.02 ± 0.39 pmol/mg protein, P < 0.05), which was associated with down-regulation of NF-κB signaling and PAR-2 expression, as well as with restored levels of vitamin D receptor and enhanced expression of TF pathway inhibitor."
sparser
"However, upon treatment with calcitriol and paricalcitol, TNF-α-induced TF expression and activity associated with downregulation of NF-κB signaling and PAR-2 expression were significantly blunted, the levels of VDR were restored, and the expression of TF pathway inhibitor (TFPI) was enhanced [ xref ]."
reach
"We found an association between TIMP-1 and APACHE-II (rho = 0.33; P = 0.001), TF (rho = 0.43; P < 0.001) and TNF-alpha (rho = 0.43; P < 0.001) (XREF_TABLE)."
reach
"Based on the present findings, we suppose that the brain region specific methylation state of solitary CpGs in the TNF-alpha promoter determines the efficacy of TF binding and thus TNF-alpha expression."
sparser
"However, in our series only lenalidomide induced upregulation of TNFα, sVCAM1, and TF were significantly associated with subsequent thrombosis ( xref )."
reach
"Besides, an association between TIMP-1 and APACHE-II (rho = 0.33; P = 0.001), TF (rho = 0.43; P < 0.001), and TNF-alpha (rho = 0.43; P < 0.001) was found in our study."
sparser
"We have also demonstrated that miR-19b upregulation induced by TNF-α is associated with TF gene transcription and miR-19b can inhibit TF expression by prompting TF mRNA degradation in ECs."
SORT1 affects GRN
2 | 10 5
2 | 9 5
sparser
"These results suggest that the functional interaction between sortilin, SLPI, and progranulin levels may be critical for prostate cancer, and sortilin/SLPI loss may contribute to progranulin-dependent action in prostate cancer progression (Figure xref )."
sparser
"In this study, we extend the previous discovery by demonstrating that PGRN also interacts with TNFR in immune system cells, examine the effects of PGRN folding on its binding to receptors by comparing the binding of PGRN to TNFR and Sortilin under various conditions, and provide information for recapitulating the high-affinity binding of PGRN to TNFR."
sparser
"To test this hypothesis, PGRN was pretreated with 10mM DTT, which is known to disturb the formation of disulfide bonds in PGRN and in turn affects its folding, and then the binding of PGRN to TNFR2 and Sortilin were measured using solid phase binding."
sparser
"PGRN is able to bind to the beta propeller region of sortilin through its C-terminal tail."
omnipath
No evidence text available
omnipath
No evidence text available
sparser
"PGRN Binding to Neuronal Sortilin."
reach
"As we mentioned in the Introduction, in neuronal cells progranulin interacts with sortilin, which promotes progranulin internalization and targeting for lysosomal degradation [XREF_BIBR]."
sparser
"PGRN binds only to Sortilin ( xref , xref )."
reach
"Upon binding to GRN, sortilin and GRN complex is rapidly endocytosed and delivered to lysosomes thereby regulating the extracellular levels of GRN."
sparser
"The Interaction Between Progranulin with Sortilin and the Lysosome."
sparser
"Interaction between PGRN and sortilin was reported to be critical for their trafficking into lysosomes, particularly in neurons [ xref , xref ]."
sparser
"Indeed, the binding affinity between progranulin and EphA2 is similar to the reported interaction of progranulin and sortilin (∼15.4 nM; xref )."
reach
"Since the binding of PGRN to SORT1 was hindered by the C-terminal tag, we next compared the ability of His rPGRN and rPGRN-His to promote outgrowth and branching in primary hippocampal cultures."
reach
"The interaction between sortilin and PGRN is thought to be crucial to regulate PGRN trafficking in neurons [XREF_BIBR, XREF_BIBR]."
reach
"Sortilin in complex with p75NTR also performs proneurotrophin apoptotic signaling, but GRN binding to sortilin does not seem to be modulated by p75NTR."
SORT1 binds GRN and NGFR. 1 / 1
| 1
sparser
"While we did not observe modulation of PGRN binding to Sortilin by p75NTR, pro-neurotrophin action may be altered in a more complex in vivo setting."
IL1B affects F3
10 | 7
IL1B increases the amount of F3.
10 |
Transcriptionally active IL1B increases the amount of F3. 10 / 10
10 |
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
IL1B binds F3.
| 7
F3 binds IL1B. 7 / 7
| 7
sparser
"Whereas treatment of cells with nSMase spiroepoxide inhibitor was associated with a substantial suppression of IL-1β-induced TF formation, fumonisin B 1 and ISP-1 failed to elicit such effect (Figure xref )."
sparser
"Subsequent experiments revealed WIN 55,212-2 to impair the phosphorylation of p38 MAPK and JNK thereby proving an additional target of the cannabinoid in interfering with TF formation by IL-1β."
sparser
"In addition, the stimulatory effect of ceramide on basal and IL-1β-induced TF protein formation was confirmed by incubating cells with nSMase from B. cereus (Figure xref )."
sparser
"First, treatment of cells with nSMase spiroepoxide inhibitor [ xref ], which selectively inhibits the nSMase-catalyzed hydrolysis of membrane sphingomyelin to ceramide, was associated with a substantial suppression of IL-1β-induced TF formation and cellular ceramide levels."
sparser
"Whereas treatment of cells with nSMase spiroepoxide inhibitor was associated with a substantial suppression of IL-1β-induced TF formation, fumonisin B 1 and ISP-1 failed to elicit such effect (Figure xref )."
sparser
"According to Figure xref , inhibition of all kinases was associated with a partial but significant inhibition of IL-1β-induced TF formation with the most pronounced effect observed with the p38 MAPK inhibitor."
sparser
"In the presence of IL-1β, however, additional treatment with AM-630 as well as the combination of AM-251 and AM-630 was associated with a further significant increase of IL-1β-induced TF protein levels (Figure xref )."
TNF affects TRPV1
| 5 11
TNF increases the amount of TRPV1.
| 9
TNF increases the amount of TRPV1. 9 / 9
| 9
reach
"TNF-alpha increases expression of TRPV1 and TRPV4 mRNA, protein and immunostaining in synoviocytes after 8 hr."
reach
"This long-term up-regulation of TRPV1 expression by TNFalpha correlated with enhancement in capsaicin induced calcitonin gene related peptide release (P < 0.05)."
reach
"It is highly likely that TNF-alpha increases expression of TRPV1 and TRPV4 by mediating the up-regulation directly and/or through initiation of downstream events since the inhibitor reduced the immunostaining increase."
reach
"In addition, TNF increases the TRPV1 protein level and number of TRPV1 expressing neurons."
reach
"TNF is known to increase the expression level of TRPV1 by activating TRPV1 dependent ERK signaling, but the influence of this overexpression on the effect of RTX is still unclear [XREF_BIBR]."
reach
"TNFalpha stimulation of cultured DRG neurons produces an increase in TRPV1 receptor protein level after 1 and 2 h of incubation [XREF_BIBR]."
reach
"In summary, our data demonstrate that TNFalpha directly enhances the sensitivity of rat trigeminal neurons to capsaicin via both rapid, non genomic mechanisms as well as sustained genomic regulation in TRPV1 expression."
reach
"In addition, TNF-alpha was also able to produce subsequent upregulation of TRPV1 protein expression when applied to cultured DRG neurons employing a pathway involving extracellular-signal-related kinase rather than p38 signaling."
reach
"It has been shown previously that TRPV1 receptor expression and sensitivity to capsaicin may be modulated by TNFalpha pretreatment [XREF_BIBR, XREF_BIBR - XREF_BIBR]."
TNF binds TRPV1.
| 5 2
| 5 2
reach
"In fact, TRPV1 shows an increase in expression after prior treatment with TNF-alpha in cultured fibroblast like synoviocytes [XREF_BIBR], suggesting a direct interaction of TNF-alpha and TRPV1."
sparser
"For instance, TRPV1 activity is clearly associated with tumor necrosis factor-α (TNF-α)-induced monoarthritis [ xref , xref ]."
sparser
"Our results demonstrate the importance of the synergistic interaction between TNF-α and TRPV1 in the cochlea and suggest that these are important therapeutic targets for treating NIHL."
reach
"Previous studies suggest interactions between TNF and TRPV1, resulting in a modulation of ion channel function and protein expression in the pathophysiology of inflammatory and neuropathic pain [XREF_BIBR, XREF_BIBR, XREF_BIBR]."
sparser
"In this study, we examine the interactions of TRPV1 and TNF for pain processing after intrathecal administration of RTX by using behavioral tests and detection of protein levels in DRG neurons of rats."
sparser
"Previous studies suggest interactions between TNF and TRPV1, resulting in a modulation of ion channel function and protein expression in the pathophysiology of inflammatory and neuropathic pain [ xref , xref , xref ]."
sparser
"In fact, TRPV1 shows an increase in expression after prior treatment with TNF-α in cultured fibroblast-like synoviocytes [ xref ], suggesting a direct interaction of TNF-α and TRPV1."
TNF affects CD4
| 6 10
TNF decreases the amount of CD4.
| 6
TNF decreases the amount of CD4. 6 / 6
| 6
reach
"This down-regulation of CD4 expression by LPS, TNF-alpha, and IL-1 beta occurs at the level of transcription."
reach
"Actually, TNFalpha down-regulates both surface and total CD4 expression in primary human macrophages at the transcription level [XREF_BIBR, XREF_BIBR - XREF_BIBR]."
reach
"TNF-alpha and IL-1 beta, proinflammatory cytokines which are both induced by LPS, also down-regulate surface and total CD4 expression in TCDM."
reach
"Our results show that LPS, TNF-alpha and IL-1 beta selectively down-regulate CD4 expression in primary human macrophages, and that decreased CD4 expression induced by LPS results from endogenous secretion of TNF-alpha and IL-1 beta by the macrophages."
reach
"TNFalpha, IL-1beta and IFN-gamma down-regulate both surface and total CD4 expression in primary human macrophages at the level of transcription [XREF_BIBR, XREF_BIBR - XREF_BIBR]."
reach
"Although prolonged (1 to 5 days) TNFalpha treatment can downregulate CD4 expression in primary human TCDM, surface CD4 levels were not reduced by 2 h of treatment and was therefore not a limiting step for HIV-1 entry."
TNF binds CD4.
| 6
TNF binds CD4. 6 / 6
| 6
sparser
"Compared with the individual use of the percentage of single TNF-α–producing CD4 T cells, the combined use of CD4 and CD8 T-cell responses was associated with substantial improvement in the NPV (10% increase), PPV (10% increase), OR (48% increase), and sensitivity (34% increase) but a minor decrease in specificity (7%)."
sparser
"Moreover, we found TNF-α amounts produced from LPS-activated GM-DCs are important for CD4 + T cell polarization, with higher TNF-α amounts being associated with increased FOXP3 + Treg generation from naïve CD4 + T cells."
sparser
"Mechanistically, tolerance induction requires the concomitant activation of autoreactive T cells and is associated with the down-regulation of the co-stimulatory TNF-receptor superfamily members OX40 and CD30 sustaining CD4(+) T cell survival."
sparser
"Elsewhere, bifunctional IFN- γ + TNF- α + CD4 + T-cells are significantly associated with active TB compared to the LTBI group [ xref ]."
sparser
"Of note, an almost unique CD4 + T cell population producing TNF and IL-2 was associated with this immunization."
sparser
"A marginally significant association between CS-specific IL-2 secretion and protection from infection has been observed in Mozambiquan infants immunised with RTS,S/AS02 ( xref ), and in the Kenyan (Olotu et al ) and American studies ( xref ) CS-responsive IL-2 + CD4 + T cells and TNF + CD4 + T cells were associated with protection against clinical malaria and malaria infection, respectively."
TNF increases the amount of CD4.
| 4
TNF increases the amount of CD4. 4 / 4
| 4
reach
"Treatment of cultures with recombinant cytokines given at concentrations in the range of those induced by HIV-1 indicated that IL-6 and TNF alpha caused an increase of : i) CD4 expression, ii) HIV absorption to uninfected cells, and iii) release of infectious virions by infected cells."
reach
"We examined the hypothesis that one of the pro inflammatory cytokines, tumour necrosis factor-alpha (TNF-alpha), could induce expression of the adhesion molecule CD4 on human eosinophils."
reach
"We also found that TNF-a could induce and maintain CD4 expression in L4E cells, although this is not the factor produced by SO stroma (32)."
reach
"Conversely, neither LPS nor TNF-alpha and IL-1 beta were able to modulate surface CD4 expression on quiescent or phytohaemagglutinin (PHA)-activated lymphocytes."
THBS1 affects SCARB2
1 | 11 4
THBS1 binds SCARB2.
1 | 4 4
1 | 4 4
reach
"Because LIMP-2 is predominantly localized on intracellular membrane bound compartments and exhibits only low levels of cell-surface expression (Okazaki et al., 1992; Suarez-Quian, 1987), it is possible that the interaction between LIMP-2 and TSP-1 does not predominate in the physiological setting, particularly given that TSP-1 is found in the matricellular environment."
sparser
"Because LIMP-2 is predominantly localized on intracellular membrane-bound compartments and exhibits only low levels of cell-surface expression (), it is possible that the interaction between LIMP-2 and TSP-1 does not predominate in the physiological setting, particularly given that TSP-1 is found in the matricellular environment."
reach
"60 TSP1 binds to the CD36, LIMP-2, Emp sequence homology domain (AA 93-155) via its TSR, and oxLDL binds to the site (AA 155-183) next to the CD36, LIMP-2, Emp sequence homology domain."
sparser
"To test whether LIMPII also binds TSP1, a LIMPII peptide corresponding to the TSP1 binding domain of CD36 was expressed as a recombinant glutathione S-transferase (GST) fusion protein."
biogrid
No evidence text available
reach
"We recently showed that the corresponding sequence of the CD36 homolog LIMPII bound TSP1 with high affinity, confirming a functionally identical domain."
reach
"To determine the extent of TSP1 contribution to saliva inhibition of HIV infectivity, clarified saliva samples were passed over affinity columns of immobilized TSP binding LIMPII fusion protein LFP75-155 before virus preincubation."
sparser
"To demonstrate that TSP-1 peptides interacted only with CD36 fusion proteins containing the TSP-1 binding domain ( xref ), their ability to block 125 I–TSP-1 binding to immobilized CD36 and CD36–GST fusion proteins was tested (Fig. xref B )."
sparser
"In addition, LIMP-2 can bind to TSP1 ( xref ) and TSP2 (not depicted)."
THBS1 activates SCARB2.
| 7
THBS1 activates SCARB2. 7 / 7
| 7
sparser
"Activation of CD36 by TSP-1 phosphorylates p38 and JNK, which results in an increased expression of FasL and apoptosis ( xref ), which we saw in our tumor cells in response to ABT-510."
sparser
"The trimeric TSP1 fragment that activates both CD148 and CD36 may be a powerful tool for anti-angiogenesis therapy."
sparser
"Through its original mechanism of action which supposes concomitant disruption of TSP-1:CD47 interaction and enhancement of CD36 activation by TSP-1, TAX2 may inhibit tumor progression while limiting many of the undesired side effects of broadly inhibiting important physiological functions of CD47."
sparser
"TSP-1 activates CD36, a transmembrane glycoprotein found on macrophages and endothelial cells [ xref , xref ]."
sparser
"Moreover, we show that activation of CD36 by TSP-1 down-modulates the VEGF receptor-2 (VEGFR-2) and p38 mitogen-associated protein kinase phosphorylation induced by VEGF-A165, and this effect was specifically abolished by point mutation at C464."
sparser
"Integrin-associated matricellular protein receptors such as CD47 and CD36 have recently been shown to be involved in pathological ROS production. xref Activation of CD47 and CD36 by thrombospondin-1 (TSP1) inhibits NO signaling xref in VSMCs and may contribute to eNOS uncoupling. xref Additionally, knockout studies of CD36 have implicated CD36 activity in the regulation of Nrf2 nuclear export and degradation, xref which ultimately results in higher levels of oxidative stress due to reduced antioxidant expression."
sparser
"Second, in higher concentrations TSP-1 binds and activates CD36, thereby decreasing intracellular cGMP-levels due to interaction with cellular uptake of myristic acid and decreased eNOS-dependent synthesis of nitric oxide [ xref ]."
CANX affects ABCA1
| 12 4
| 12 4
sparser
"Nef disrupted interaction between calnexin and ABCA1 but increased affinity and enhanced interaction of calnexin with HIV-1 gp160."
sparser
"Interestingly, gp160 and ABCA1 interacted with calnexin differently; although gp160 binding to calnexin was dependent on glycosylation, glycosylation was of little importance for the interaction between ABCA1 and calnexin."
sparser
"However, gp160 and ABCA1 interacted with calnexin differently: while gp160 binding to calnexin was dependent on glycosylation, interaction of ABCA1 with calnexin was glycosylation-independent."
| PMC
sparser
"However, gp160 and ABCA1 interacted with calnexin differently: while gp160 binding to calnexin was dependent on glycosylation, glycosylation was of little importance for interaction between ABCA1 and calnexin."
| PMC
sparser
"Biochemical analysis demonstrated that Nef binds to the cytoplasmic domain of calnexin and impairs interaction of calnexin with ABCA1 (supposedly by inducing a conformational change in calnexin), thus affecting ABCA1 maturation [ xref ]."
reach
"Nef disrupted interaction between calnexin and ABCA1 but increased affinity and enhanced interaction of calnexin with HIV-1 gp160."
sparser
"While this finding is consistent with demonstrated localization of Nef to the cytoplasmic side of membranes xref and lack of evidence for Nef localization to ER, it is surprising given that the C-tail of CNX is not involved in the interaction between CNX and ABCA1, which is disrupted by Nef xref ."
reach
"The mechanism of this effect involves Nef interacting with an ER chaperone calnexin and disrupting calnexin binding to ABCA1, leading to ABCA1 retention in ER, its degradation and resulting suppression of cholesterol efflux."
reach
"Our results are consistent with a model whereby Nef disrupts the interaction between calnexin and ABCA1 by a competitive mechanism, via binding to calnexin and preventing its interaction with ABCA1, thus affecting ABCA1 maturation and promoting its degradation via the lysosomal pathway."
| PMC
sparser
"Importantly, inhibition of ABCA1-CNX interaction by Nef is specific, as interaction between ABCA1 and two other proteins, dystrophin and serine palmitoyltransferase, shown previously to bind ABCA1 xref , was not affected."
sparser
"To accomplish this effect, Nef interacts with ER chaperone calnexin, which regulates folding and maturation of glycosylated proteins, and disrupts the interaction between calnexin and ABCA1, thus abrogating the processing of ABCA1 in ER ( xref )."
sparser
"However, gp160 and ABCA1 interacted with calnexin differently: while gp160 binding to calnexin was dependent on glycosylation, glycosylation was of little importance for interaction between ABCA1 and calnexin."
| PMC
reach
"To accomplish this effect, Nef interacts with ER chaperone calnexin, which regulates folding and maturation of glycosylated proteins, and disrupts the interaction between calnexin and ABCA1, thus abrogating the processing of ABCA1 in ER."
sparser
"A new study revealed that Nef disrupts the interaction between the ER chaperone calnexin and ABCA1, which is essential for the functionality of ABCA1 [ xref ]."
sparser
"A new study revealed that Nef disrupts the interaction between the ER chaperone calnexin and ABCA1, which is essential for the functionality of ABCA1 [13]."
sparser
"Recently, we demonstrated that an important mechanism of down-regulation and/or functional impairment of ABCA1 by HIV is Nef-mediated inhibition of the interaction between ABCA1 and the ER chaperone, CNX xref ."
TRPV2 affects TRPV1
1 | 10 4
1 | 10 4
sparser
"The present study suggests that TRPV1- and TRPV2-IR jugular-petrosal neurons may be associated with the regulation of the swallowing reflex."
sparser
"We have also used the conservation profiles in the cytosolic domains to extrapolate functions of one channel to the rest, such as the AKAP interaction of TRPV1, the PIP2 binding of TRPV1 and TRPV2, etc."
sparser
"TRPV1 can associate with TRPV2 and TRPV3 and widespread interaction has been shown for TRPV1-TRPV4 [ xref , xref ]."
sparser
"Furthermore, TRPV1 can associate with TRPV2 and TRPV3 (Cheng et al., xref ) and widespread interaction has been shown for TRPV1-TRPV4 (Cheng et al., xref )."
sparser
"No member of the PACSIN protein family was able to biochemically interact with TRPV1 and TRPV2."
reach
"TRPV1 can associate with TRPV2 and TRPV3 and widespread interaction has been shown for TRPV1-TRPV4 [XREF_BIBR, XREF_BIBR]."
sparser
"Various heteromeric combinations have been reported within TRPV1 to TRPV4 ( xref ) while Hellwig et al. only observed interaction between TRPV1 and TRPV2 ( xref )."
reach
"Various heteromeric combinations have been reported within TRPV1 to TRPV4 while Hellwig et al. only observed interaction between TRPV1 and TRPV2."
sparser
"In addition, co-immunoprecipitation and co-staining experiments indicated an intimate and physiologically relevant interaction of TRPV1 with TRPV2 subunits in rodent dorsal root ganglia (DRG), as well as in cell lines after recombinant channel expression  [12,14] ."
hprd
No evidence text available
sparser
"In this context, it is remarkable that only four mutations in TRPV2 (TRPV2-4M) are sufficient to enable robust activation by the TRPV1-specific vanilloid agonist resiniferatoxin (RTx) ( xref ; xref ; xref ), suggesting that the sites where vanilloids interact with TRPV1 and TRPV2-4M are very similar, and that these channels share mechanisms of activation."
reach
"Furthermore, TRPV1 can associate with TRPV2 and TRPV3 and widespread interaction has been shown for TRPV1-TRPV4."
reach
"TRPV2, initially isolated from the brain as a VR1 like protein (VRL1) with high-temperature threshold (> 53 degreesC), forms heteromultimers with TRPV1 [14] and is upregulated during inflammatory hyperalgesia [15]."
sparser
"Cytoplasmic TRPV1 and TRPV2 may be associated with these pathways for their exocytotic trafficking to the plasma membrane."
sparser
"Mammalian homologues that belong to this family include VR1 and VRL1, which form Ca 2+ -permeable nonselective cation channels involved in the transduction of pain-producing heat in sensory nerves 27,28,52 ."
TNF affects PTGER4
3 | 1 3 7
TNF increases the amount of PTGER4.
3 | 1 6
TNF increases the amount of PTGER4. 7 / 7
| 1 6
reach
"Specifically, CsA can suppress TNF production without decreasing TNF mRNA, while either dexamethasone or PGE2 block TNF transcription."
reach
"We conclude that (1) IL-1, TNF-alpha, and PTH, but not IL-6 nor IL-11, can increase the expression of PGHS-2, cPLA2, and PGE2 production in cultured mouse calvariae; (2) IL-4 inhibits PGE2 production in both control and stimulated calvarial cultures by inhibiting PGHS-2 and cPLA2; and (3) IL-4 has an inhibitory effect on bone resorption which is independent of PG production."
reach
"Studies have shown that TNF-alpha, along with IFN-gamma, promotes the expression of HGF, PGE2, and COX-2 levels by allogeneic MSCs, contributing to the inhibition of proliferating T lymphocytes [XREF_BIBR]."
isi
"Also, guava significantly enhanced HGEK-16 cell viability (P < 0.05), and IL-beta1, TNFalpha and PGE2 expression presented a 0.6-fold decrease when exposed to guava and LPS (P < 0.05)."
reach
"In the bioactivity assay, PGE2 levels induced by TNFalpha were reduced to an average of 30% using microspheres loaded with 0.1 nmol CXB per transwell; with microspheres loaded with 0.1 nmol TA, PGE2 production was initially reduced to 3% and gradually recovered to 30% reduction."
reach
"Purified human rIL-1 alpha and IL-1 beta increased the levels of both products in the supernatants of the synovial cells; TNF-alpha raised the PGE2 levels but raised the plasminogen activator activity only weakly and inconsistently."
reach
"Taken together, our results suggest that TNFalpha induced a switch from the PGD2 to PGE2 synthesis pathway by regulating PGE2 synthase expression and/or activity and that activators of PKA markedly potentiated the TNFalpha induced increase in PGE2 through up-regulation of COX2 gene expression."
Transcriptionally active TNF increases the amount of PTGER4. 3 / 3
3 |
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
TNF binds PTGER4.
| 3 1
| 3 1
reach
"Although molecular interactions between TNF-alpha and PGE2 are largely unexplored in human malaria, results presented here show that pfHz induced suppression of PBMC COX-2 gene products induces overproduction of TNF-alpha."
sparser
"As expected, the EP2-R agonist failed to inhibit TNFα-production in EP2-R-deficient cells while the EP4-R agonist did not attenuate TNFα-formation in EP4-R-deficient cells ( Fig. 2 )."
sparser
"The data indicate, that PGE2 can inhibit TNFalpha-formation via both the EP2- and the EP4-receptor and that, however, the EP4-receptor appears to be physiologically more relevant in Kupffer cells since it conferred a high affinity response to PGE2."
sparser
"Exogenous PGE2 inhibited TNFalpha-formation in Kupffer cells lacking either EP2-receptor or EP4-receptor to a similar extent as in control cells, however, 10-fold higher PGE2 concentrations were needed for half maximal inhibition in cells lacking the EP4-receptor than in control or EP2-receptor-deficient cells."
CD4 affects CD274
| 12 2
| 12 2
reach
"Results herein show that in these diseases fewer Abeta specific CD4 + T cells can bind scarcer quantities of PD-L1 molecules on the surface of CD14 + APC."
reach
"These findings prompted us to investigate the association between CD8, CD4, PD-1, and PD-L1 positive cell densities at baseline and treatment outcome (XREF_FIG)."
sparser
"MSCs treated with IFN γ also can express inhibitory costimulatory molecules such as B7 family coregulatory molecules B7-H1 [ xref ], which can interact with CD4 + lymphocytes and block cell proliferation, promoting T cell anergy."
sparser
"A possible mechanism by which both MDSCs and Tregs reinforce each other is the interaction between PD-L1 of MDSCs and PD-1 of CD4 + T cells [7] ."
sparser
"Expression of PD-L1 is associated with the inhibition of autoreactive CD4 + T cell responses and peripheral T cell tolerance [ xref ]."
sparser
"We found that PD-L1-mediated suppression of WT CD4 + T cells was associated with an increase in dead cells by 30%."
sparser
"In the mouse model examined, cross-dressing was associated with enhanced expression of PD-L1 on myeloid DC and reduced presentation of allopeptide + self-MHC complexes together with increased PD-L1 on plasmacytoid DC that was associated with PD-L1-dependent CD4 + T cell anergy."
sparser
"PD-1 and PDL-1 expressions are inversely associated with the CD4 + T cell responses to HBsAg in HCV-infected individuals."
sparser
"Surprisingly, PD-L1:PD-1 interaction between ILC2s and CD4 + T cells did not inhibit the T cell response, but PD-L1–expressing ILC2s stimulated increased expression of GATA3 and production of IL-13 by Th2 cells both in vitro and in vivo."
sparser
"Interestinly, although CD4 lymphocyte infiltration was associated with CD8 and PD-L1 expression, it did not show correlation with response or survival to pembrolizumab."
sparser
"These PD-L1–expressing myeloid cells may interact with autoreactive CD4 and CD8 T cells and may be contributing to their demise."
sparser
"High PD-L1 was similarly associated with infiltration of both CD4- and CD8 T-cell subsets."
sparser
"However, the association of CD4 + T cells specific B7-H1 and MS development was not fully investigated."
sparser
"In contrast, PD-L1-mediated suppression of Cbl-b −/− CD4 + T cells was not associated with a significant change in the number of dead cells (Figure xref C)."
TNF affects THBD
1 | 12
TNF decreases the amount of THBD.
1 | 8
TNF decreases the amount of THBD. 9 / 9
1 | 8
reach
"32 TNF-alpha can down-regulate the expression of thrombomodulin on endothelial cells."
reach
"TNF suppresses transcription of the thrombomodulin gene in endothelial cells and may affect coagulation [XREF_BIBR]."
reach
"Thromobomodulin transgene expression driven by the enhanced PAI-1 promoter in rAAV vector transduced cultured endothelial cells was between 600- and 1000-fold higher than constitutive thrombomodulin gene expression in cultured human umbilical vein endothelial cells and was up-regulated by TGFbeta1 and TNFalpha stimulation which may down-regulate endogenous thrombomodulin gene expression in endothelial cells."
reach
"In the downstream events, TNF-alpha increased TF antigen and activity, and suppressed the expression of thrombomodulin (TM) antigen."
reach
"TNFa and interleukin 1beta induce the expression of endothelial procoagulant activity (tissue factor) and simultaneously downregulate the expression of thrombomodulin, the endothelial surface high-affinity receptor for thrombin, which complexes thrombin to activate the potent anticoagulant protein-C system."
reach
"Tumor necrosis factor (TNF), a mediator of the inflammatory response, induces tissue factor and decreases the expression of thrombomodulin (TM) on endothelial cells, thus shifting the hemostatic properties of the endothelium."
reach
"Suppression of endothelial thrombomodulin expression by TNF-alpha has been documented [XREF_BIBR]."
bel
"TNF alpha and other inflammatory mediators can down-regulate EPCR and TM and IL-6 can depress levels of protein S in experimental animals."
reach
"We conclude that TNF acts primarily to inhibit thrombomodulin transcription."
TNF increases the amount of THBD.
| 4
TNF increases the amount of THBD. 4 / 4
| 4
reach
"In vitro, tumor necrosis factor (TNF) induces endothelial expression of the procoagulant, tissue factor, and downregulation of thrombomodulin, a key component of the thrombomodulin and protein C (PC)/protein S (PS) pathway, which normally maintains an anticoagulant state by inactivating thrombin, preventing further thrombin formation by degrading factors Va and VIIIa, and decreasing plasminogen activator inhibitor activity."
reach
"A major component of this response is a reduction in expression of thrombomodulin, a cell surface cofactor for the activation of protein C. Regulation of thrombomodulin expression by TNF has been reported to occur through multiple mechanisms."
reach
"Suppression of endothelial thrombomodulin expression by TNF-alpha has been documented [XREF_BIBR]."
reach
"TNFalpha and IL-1beta promote thrombosis at the vascular wall by inducing endothelial expression of tissue factor and downregulating expression of thrombomodulin, the endothelial thrombin receptor that plays a key role in the activation of the anticoagulant protein C pathway."
TGFB1 affects CD44
| 9 4
| 9 4
reach
"A recent study found that CD44 protein levels were enhanced by TGF-beta1 treatment and that synergistic interactions between CD44 and TGF-beta1 induced EMT and CSC phenotypes through Akt/GSK-3beta/beta-catenin signaling axis in HCC [XREF_BIBR]."
sparser
"To further delineate the effects of TGF-β1-CD44 interactions on EMT, we first evaluated whether EMT could be induced by TGF-β1 treatment in SNU-354 cells intrinsically lacking TGF-β1 expression, which did not show EMT induction by CD44 sorting alone."
sparser
"In conclusion, the current study demonstrated the synergistic interactions between CD44 and TGF-β1 in EMT induction and CSC properties through the AKT/GSK-3β/β-catenin pathway in HCC cells."
reach
"We performed a variety of functional tests using TGF-beta1, TGF-beta1 inhibitor, and CD44 knockdown and identified a direct interaction between CD44 and TGF-beta1 in EMT induction.The human HCC cell lines SNU-368 and SNU-354 were obtained from the Korean Cell Line Bank (KCLB, Seoul, Korea)."
sparser
"We performed a variety of functional tests using TGF-β1, TGF-β1 inhibitor, and CD44 knockdown and identified a direct interaction between CD44 and TGF-β1 in EMT induction."
reach
"By testing high expression CD44 HCC cells with differential TGF-beta1 expression, we confirmed that EMT induction and tumor aggressiveness are tightly regulated by interactions between CD44 and TGF-beta1."
sparser
"By testing high expression CD44 HCC cells with differential TGF-β1 expression, we confirmed that EMT induction and tumor aggressiveness are tightly regulated by interactions between CD44 and TGF-β1."
reach
"In conclusion, the current study demonstrated the synergistic interactions between CD44 and TGF-beta1 in EMT induction and CSC properties through the AKT/GSK-3beta/beta-catenin pathway in HCC cells."
sparser
"However, it remains unclear how CD44 interacts with TGF-β1 during EMT induction."
sparser
"The effect on TGF-β1 is not unexpected as activated CD44 interacts with TGF-β1 to promote myofibroblast differentiation and a fibrogenic phenotype, which promotes subsequent deposition of interstitial collagens."
sparser
"Suppression of CD44 expression was associated with abrogation of TGF-β1-dependent induction of α-SMA as assessed by Q-PCR (Figure 7B) and immunohistochemistry (Figure 7, D–G) ."
sparser
"TGF-β1-dependent phenotypic activation in young cells was associated with recruitment of a significant amount of EGF-R to the CD44-EGF-R complex."
sparser
"Recent studies have demonstrated that TGF-β1 induced CD44 dependent HA-binding in lung-derived epithelial cells is associated with both reduced -glycosylation and increased sulphation ()."
CD4 affects BST2
| 12 1
| 12 1
sparser
"Beside these interesting changes, the specific determinants for CD4, BST-2 and β-TrcP binding remained highly conserved ( xref ) among all the variants xref – xref , xref – xref ."
sparser
"Additionally, we show direct binding of HIV-1 Vpu to CD4 and the recently described restriction factor CD317 (also termed Bst-2 or tetherin), which inhibits retroviral particle release from infected cells xref ."
sparser
"However, Vpu also binds the HIV cell surface receptor CD4 and the restriction factor tetherin, promoting their ubiquitination and degradation by bringing them in close proximity to the SCF β-TrCP E3 ligase complex ( xref , xref )."
sparser
"In recent years it has become evident that Vpu from HIV-1 is interacting with a number of host factors such as CD4, BST-2 and NTB-A (reviewed in )."
sparser
"To further define the viruses’ affinity for CD4 we compared the binding of CD4-IgG 2 to cell surface-expressed envelope trimers by flow cytometry."
sparser
"This protein–protein interaction varies according to the particular viroporin analysed; for instance Viral Protein Unique (Vpu) interacts with CD4 receptor and tetherin (BST2), thereby facilitating the budding of virus particles."
sparser
"Mechanistically, tetherin blocks HIV-1 particle release and, therefore, leads to the formation of aggregated viral particles at the host cell membrane, while Vpu mediates interaction of either CD4 or BST2 to BTRC (βTrCP-1), a substrate recognition subunit of the Skp1/Cullin/F-box E3 ubiquitin ligase, leading to their ubiquitination and subsequent proteasomal degradation [ xref ]."
sparser
"Additionally, considering the importance of the structural configuration of Vpu for targeting both BST2 and its other host protein target CD4, as well as the roles of disordered regions in modulating structural orientation or affording structural plasticity that facilitates interaction with target proteins, we further examined whether these conserved hinge region residues orient Vpu in such a way that binding to BST2 and CD4 is favoured."
sparser
"Given that f-actin formation in isolated human CD4-positive lymphocytes is an important mechanism in cell polarisation during cell migration xref , xref , we next investigated the effect of GLP-1(9-36) on f-actin formation in isolated human CD4-positive lymphocytes using flow cytometry analysis."
reach
"Mechanistically, tetherin blocks HIV-1 particle release and, therefore, leads to the formation of aggregated viral particles at the host cell membrane, while Vpu mediates interaction of either CD4 or BST2 to BTRC (betaTrCP-1), a substrate recognition subunit of the Skp1/Cullin/F-box E3 ubiquitin ligase, leading to their ubiquitination and subsequent proteasomal degradation [XREF_BIBR]."
sparser
"To investigate whether our assay allows to map interacting domains within proteins, we analysed a variety of previously described Vpu mutants xref for their capacity to bind CD4 and CD317 ( xref )."
sparser
"Taken together with the BST2 binding data, the results demonstrate that the E28/L33 residues are essential for optimal binding to both BST2 and CD4."
sparser
"It remains to be elucidated whether the hinge region glutamate residue in VpuC contributes towards binding to BST2 and/or CD4, and whether it is involved as a part of an active trafficking signal."
TNFSF9 affects TLR4
1 | 8 3
1 | 8 3
sparser
"This is followed by the formation of a MyD88- and TRIF-independent complex containing TLR4 and 4-1BBL during the late phase of the response that is required to sustain TNF-α production ( xref )."
sparser
"We showed that Toll-interleukin-1 receptor (TIR) domain-containing adaptor protein (TIRAP) and the kinase IRAK2 interacted with 4-1BBL to mediate late-phase TLR4 signaling."
reach
"These results suggested that the TIRAP inhibitor blocked the activation of inflammatory responses during sepsis by inhibiting TLR4 signaling not only the early phase, but also the late phase, and that inhibition of the late-phase interaction between TLR4, TIRAP, and 4-1BBL alleviated LPS induced sepsis."
reach
"We found that full-length 4-1BBL interacted with TLR4 and induced CREB activation (XREF_FIG)."
sparser
"We found that full-length 4-1BBL interacted with TLR4 and induced CREB activation ( xref )."
biogrid
No evidence text available
sparser
"Interesting in this context, it was shown that TLR signaling induces 4-1BBL expression on the surface of macrophages and the physical interaction of 4-1BBL with TLR-4 is necessary for sustained TNF production ( xref , xref )."
sparser
"The cytoplasmic domain of 4-1BBL was required for its functional association with TLR4 provided that the transmembrane domain of 4-1BBL was also present; however, the isolated cytoplasmic domain of 4-1BBL did not interact with TLR4 ( xref )."
reach
"We conclude that a physical interaction between 4-1BBL and TIRAP is required for signaling downstream of the association between TLR4 and 4-1BBL through the formation of a complex containing TRAF6, TAK1, and TAB1 during the late phase of macrophage activation."
sparser
"Transient TLR4-MyD88 complexes appeared during the first hour after lipopolysaccharide stimulation, and TLR4-4-1BBL interactions were detected between 2 h and 8 h after lipopolysaccharide stimulation."
sparser
"These results suggested that the TIRAP inhibitor blocked the activation of inflammatory responses during sepsis by inhibiting TLR4 signaling not only the early phase, but also the late phase, and that inhibition of the late-phase interaction between TLR4, TIRAP, and 4-1BBL alleviated LPS-induced sepsis."
sparser
"Because TLR44-1BBL complex formation was demonstrated during sustained macrophage activation ( xref ), we speculated about the formation of a TLR44-1BBL–TIRAP complex during the late phase of TLR signaling; thus, we further examined potential interactions between the 4-1BBL–TIRAP and TRAF6-TAK1-TAB1 complexes."
TNFRSF11A affects TNF
| 10 2
| 9 2
sparser
"Activated T cells can also trigger activation of DC via CD40–CD40L and TNF-related activation-induced cytokine (TRANCE)-TRANCE-R interactions ( Bachmann et al., 1999 ; Josien et al., 1999 ; Wong et al., 1999 ) ( Fig. 2 )."
sparser
"Although these results suggest that TNF-α induces osteoclast differentiation through TNFR1/TNFR2, there were still two possibilities that TNF-α directly binds to RANK or TNF-α increases endogenous production of some factor(s) that can interact with RANK."
sparser
"RANKL is a cytokine of the TNF family, which binds to its receptor RANK as initially documented in osteoclast precursors and dendritic cells [ xref ]."
reach
"Using this approach, we examined the role of six RANK putative tumor necrosis factor receptor associated factor binding motifs (PTM) (PTM1, ILLMT-REE (286-293); PTM2, PSQPS (349-353); PTM3, PFQEP (369-373); PTM4, VYVSQTSQE (537-545); PTM5, PVQEET (559-564); and PTM6, PVQEQG (604-609)) in osteoclast formation and function."
sparser
"It binds RANK ligand [RANK-L/osteoprotegerin ligand (OPGL)/TNF-related activation-induced cytokine (TRANCE)], a TNF superfamily member that acts as a trimer."
sparser
"OPG competes with RANK (receptor activator of nuclear factor κB [NF-κB]) for binding of RANK ligand (RANKL, OPG1) that is also a TNF family member."
reach
"XREF_BIBR, XREF_BIBR In the downstream cascade, transduction factor TNF receptor associated factors (TRAFs), especially TRAF6, can bind to RANK to activate NF-kappaB and the JNK/AP -1 pathway."
sparser
"A functional interaction between RANKL, a member of the tumor necrosis factor (TNF) ligand superfamily and RANK, its cognate TNF-receptor is essential for osteoclast differentiation, survival and activation [ xref ]."
sparser
"On the other hand, the differentiation of precursor cells into osteoclasts depends on the interaction of ODF and RANK (receptor-activator of NFκB), which are members of the TNF and TNF receptor family, respectively."
sparser
"The binding of RANKL to its receptor RANK, a member of the TNF receptor (TNFR) superfamily, recruits and induces the trimerization of adaptor molecules such as TRAF6."
sparser
"Previous studies have reported that increased SOCS3 elevated transforming growth factor-β, TNF-α and RANK ligand (RANKL)-induced osteoclast formation, and promoted precursors to the osteoclast lineage through the inhibition of specific anti-osteoclastic Janus kinase/signal transducer and activator of transcription signals ( xref )."
| 1
sparser
"Osteoclast differentiation requires the interaction of RANK (receptor activator of NF kappaB) and RANK ligand, conserved member of the TNF (tumor necrosis factor) receptor and TNF families, respectively."
TNF affects PLAUR
| 1 11
TNF increases the amount of PLAUR.
| 10
TNF increases the amount of PLAUR. 10 / 10
| 10
reach
"Although tumor necrosis factor alpha (TNF) upregulated monocyte uPAR expression, anti-TNF did not influence the endotoxin induced increase in monocyte uPAR expression."
reach
"TNF-alpha for example is known to play an important role in cerebral malaria and enhances uPAR expression in macrophage like U937 cells, colon carcinoma cell lines, and endothelial cells (Van Hinsbergh et al., 1990; Yoshida et al., 1996)."
reach
"To characterize the signal transduction pathways which regulate the uPAR gene, further experiments are currently in progress to study the signalling pathways and the regulatory sequence (s) and transacting factor (s) that contribute to regulation of uPAR gene expression by PMA, TNFa and amiloride."
reach
"We did not exhaustively explore this possibility, but did examine some likely candidates : VEGF, which signals through VEGF receptors to increase MT1-MMP expression XREF_BIBR; HGF, shown to induce MT1-MMP, MMP2, uPA, and uPAR expression in cancer cells XREF_BIBR, XREF_BIBR; and TNFalpha, which enhances uPAR expression by ECs XREF_BIBR."
reach
"Pro inflammatory cytokines, IFN-gamma) and TNF-alpha (not shown), as well as LPS) enhanced uPAR expression."
reach
"UPAR biosynthesis, the uPAR mRNA level and gene transcription are also increased by transforming growth factor beta (TGFss) and dexamethasone in A549 lung carcinoma cells [12], but reports of transcriptional regulation of uPAR mRNA expression by TNFa in any cell type are * Corresponding author."
reach
"While TNFalpha enhanced uPAR gene expression after 24 hours of treatment (twofold increase), it strongly decreased uPA gene expression (more than 70% reduction) compared with nontreated control conditions."
reach
"To investigate whether induction of uPAR gene expression by TNFa or PMA was dependent on de novo protein synthesis, 139 1 2 3 4 - uPAR - -18 S rRNA- 12 3 4 5 Fig. 1."
reach
"Amiloride (1 mM) also markedly inhibited the uPAR mRNA expression induced by CHX and TNFa."
reach
"Since TNFalpha potently induces uPAR expression in cultured hepatic stellate cells [XREF_BIBR], it is interesting to know how hCLS formation induces TGFbeta activation during the development of NASH and how EPA suppresses the process."
TNF binds PLAUR.
| 1 1
| 1 1
sparser
"Upon the combination of TNF and PGE 2 , the increased transcription of HBEGF and PLAUR associated with chromatin opening in their promoter regions, as detected by ATAC-seq (assay for transposase-accessible chromatin-seq) and FAIRE-qPCR (formaldehyde-assisted isolation of regulatory elements-qPCR) ( xref , xref and xref , respectively, and xref )."
reach
"In contrast, the N-terminal fragment of uPA, which binds to uPAR, but lacks the catalytic site, failed to induce MMP-1 production, indicating that uPA stimulated MMP-1 synthesis was plasmin dependent."
TNF affects IL31RA
| 12
| 11
sparser
"As expected transfection of plasmids encoding sTNF or memTNF resulted in strong reduction of GpL-TNF binding to TNFR2 (Figures xref A,B)."
sparser
"Neither, PGRN samples from Adipogen and R&D Systems, which has been used in reports demonstrating PGRN–TNF receptor interaction, nor HEK293-derived SNs containing untagged PGRN showed an inhibitory effect on binding of a GpL-TNF fusion protein to plastic-bound or cell-expressed TNFR1/2 (Figures xref and xref ; Figures S1, S2, and S4 in Supplementary Material)."
sparser
"Neither pretreatment with PGRN lys nor with PGRN SN showed a significant inhibitory effect on GpL-TNF binding to TNFR2-Fc (Figures xref B,C)."
sparser
"Next, we analyzed the effect of PGRN on GpL-TNF binding to cells transfected with expression plasmids encoding TNFR1 and TNFR2."
sparser
"Therefore, even if the GpL domain of GpL-TNF did bind irreversibly to PGRN, a huge surplus of “GpL-free” PGRN would have been available in our experiments to block TNFR1/TNFR2 binding by GpL-TNF (or by GpL-TNF in complex with PGRN)."
sparser
"In contrast, lysates and SNs of EV-transfected cells (EV lys and EV SN ) supplemented with 2,000 ng/ml soluble TNF showed efficient inhibition of binding of GpL-TNF (Figures xref B,C)."
sparser
"Preincubation of the TNF receptor transfectants with 50,000, 5,000, and 500 ng/ml of sTNF diminished specific binding of GpL-TNF to both receptors completely, for >99 or >90% (Figure xref B)."
sparser
"To rule out that tags and purification- or storage-related effects compromise the potential ability of PGRN to bind TNF receptors, we directly co-expressed PGRN, and as control TNF, in TNFR1- and TNFR2-expressing cells and looked for binding of GpL-TNF."
sparser
"While expression of TNF strongly inhibited binding of GpL-TNF to TNFR1/2, co-expression of PGRN had not effect on the ability of the TNFR1/2-expressing cells to bind TNF."
sparser
"There was again no evidence for an interference of PGRN with the interaction of GpL-TNF and TNFR2."
sparser
"In a prototypical cell-free competition assay with plastic-bound Fc fusion proteins of the TNFR1 and TNFR2 ectodomains (TNFR1ed-Fc and TNFR2ed-Fc), we obtained no evidence for a significant inhibition of GpL-TNF binding to the two TNF receptors by a >1,000 fold excess of commercially available PGRN samples (Figure xref A)."
TNF binds IL31RA and GRN. 1 / 1
| 1
sparser
"Therefore, even if the GpL domain of GpL-TNF did bind irreversibly to PGRN, a huge surplus of “GpL-free” PGRN would have been available in our experiments to block TNFR1/TNFR2 binding by GpL-TNF (or by GpL-TNF in complex with PGRN)."
TNF affects IL1R1
1 | 4 7
TNF binds IL1R1.
| 4 7
| 2 7
reach
"Here we report that blockade of IL-1alpha and beta and TNFalpha binding to IL-1R and TNFR1, respectively, reduced neuropathology in parietal cortex, hippocampus, and thalamus and improved outcome."
sparser
"Interestingly, while the p80 form of the TNF receptor mRNA levels was elevated by both phorbol ester and dibutyryl cAMP, only dibutyryl cAMP increased the TNF binding; phorbol ester treatment decreased the binding activity."
sparser
"Our study confirms the association of SNPs IL1R1 (rs2234650) and TNFA (rs1800629) with risk of vertical transmission."
reach
"In the case of RIP and IL-1 receptor associated kinase (IRAK), kinases that are part of the TNF- and IL-1R complex, respectively, the essential role suggested for these molecules in TNF and IL-1 signalling could be confirmed in the respective knockout mice (see below)."
reach
"On the other hand, application of IL-1ra or TNF binding protein to diet treated ApoE -/- mice resulted in reduced lesion area."
reach
"These cytokines and their receptors have also been reported to be involved in bone loss after estrogen deficiency : for instance, administration of IL-1Ra and TNF binding protein (TNFbp), an inhibitor of TNF, to ovariectomized mice decreased osteoclastogenesis and bone resorption [XREF_BIBR]."
reach
"The binding of TNF to p60 or p80 receptor was determined by preincubating the cells at 37 C for 1 h with 0.6-0.8 / < g/ml of either preimmune or anti-p60 or anti-p80 antibodies before initiating the 0014-5793/94/S7.00 1994 Federation of European Biochemical Societies."
reach
"XREF_BIBR We have earlier found bivariate associations between trauma and IL-1RA and TNF-alpha in a cross-sectional assessment, XREF_BIBR and we decided to explore these relationships longitudinally."
reach
"IL-1 and TNFalpha bind to the receptors IL-1R and TNFR, respectively, and trigger activation of distinct signaling cascades that converge on TGF-beta activated kinase 1 (TAK1), which phosphorylates and activates IKK, leading to activation of NF-kappaB (XREF_FIG) [XREF_BIBR]."
| 2
sparser
"Then the cells were resuspended in essential medium at a concentration of 5 x lO'/ml and incubated for another 16 h at 37 C. Thereafter specific TNF binding to p60 and p80 was determined as described in section 2."
sparser
"Here we report that blockade of IL-1α/β and TNFα binding to IL-1R and TNFR1, respectively, reduced neuropathology in parietal cortex, hippocampus, and thalamus and improved outcome."
TNF decreases the amount of IL1R1.
1 |
Transcriptionally active TNF decreases the amount of IL1R1. 1 / 1
1 |
biopax:ctd
No evidence text available
MME affects F3
| 12
MME binds F3.
| 11
| 11
sparser
"TF chaperone action is thought to require association with the ribosome at the polypeptide exit tunnel and is attributed to TF interactions with emergent nascent polypeptides ( xref ; xref ; xref ; xref ; xref ; xref ; xref )."
sparser
"Therefore, both TF 2 dimers and TF monomers can interact with polypeptides."
sparser
"At the ribosome, TF interacts physically with nascent polypeptides as they emerge from the polypeptide exit tunnel where, it is suggested, hydrophobic segments preferentially contact TF to facilitate folding ( xref ; xref ; xref ; xref )."
sparser
"However, since TF is not an essential protein [ xref ], it is likely that only a fraction of emerging nascent polypeptides interact with TF."
sparser
"Protease protection appears to depend on a hydrophobic interaction of TF with nascent polypeptides."
sparser
"Studies of the Escherichia coli chaperone Trigger Factor (TF) reveal that, while TF can interact with many polypeptides, β-barrel outer membrane proteins are the most prominent substrates."
sparser
"Upon deleting dnaK or dnaJ , the population increase of TF bound to the free ribosomal subunits can be rationalized by the possibility that TF takes over DnaK’s role as a complement in facilitating ribosome assembly ( xref , xref ), while the population increase of the polypeptide-bound TF can be rationalized by the interruption of the pathway in which TF-polypeptide complexes interact with DnaK/DnaJ to transfer the unfolded polypeptides to complete folding ( xref )."
sparser
"Studies of the Escherichia coli chaperone trigger factor (TF) reveal that, though TF can interact with many polypeptides, β-barrel outer-membrane proteins are the most prominent substrates."
sparser
"Second, TF associates with the ribosome to sequester and protect polypeptides just as they emerge from the peptide exit tunnel [ xref ] and this association is crucial for its in vivo function [ xref ]."
sparser
"Moreover, heat shock and TF overproduction affected GroEL binding to other denatured polypeptides in distinct ways; only TF promoted binding to certain polypeptides, whereas only phosphorylation increased binding to others."
sparser
"Moreover, heat shock and TF overproduction affected GroEL binding to other denatured polypeptides in distinct ways; only TF promoted binding to certain polypeptides, whereas only phosphorylation increased binding to others."
MME inhibits F3.
| 1
MME inhibits F3. 1 / 1
| 1
sparser
"Hookworm larvae can release a family of protein called “ancylostoma-secreted proteins (ASP)” [ xref , xref , xref ] and can secrete low-molecular weight polypeptides which inhibit clotting factor Xa and tissue factor VIIa [ xref ]."
TNF affects AQP1
| 11
TNF decreases the amount of AQP1.
| 7
TNF decreases the amount of AQP1. 7 / 7
| 7
reach
"No significant differences in Aqp-1 were found for untreated cells between the 24 hour and 1 week time points, but LPS and TNF-alpha treated cells had significantly reduced Aqp-1 expression at the recovery time point as compared with 24 hour treatment (p < 0.01)."
reach
"The results, depicted in XREF_FIG B, show that TNF-alpha treatment downregulates the expression of both AQP1 and AQP5 (0.183 +/- 0.01 and 0.083 +/- 0.01-fold p < 0.001, respectively), as previously reported [XREF_BIBR]."
reach
"Furthermore, our results show that TNF-alpha treatment downregulates AQP1 expression in endothelial cells, suggesting that SAH induced inflammatory activation might be responsible for the observed SAH mediated decrease of AQP1."
reach
"TNF-alpha Decreases AQP1 and AQP5 Expression in BEAS 2B Cells."
reach
"As seen in XREF_FIG A, AQP1 mRNA expression in HK2 cells was downregulated by a combined TNFalpha plus IL-1beta treatment."
reach
"Suppression of AQP1 transcription by inflammatory TNF-alpha is restrained by KLF2."
reach
"Interestingly, B6-RPE07 cells expressed AQP1 in vitro, and TNF-alpha downregulated AQP1 protein expression in those cells."
TNF increases the amount of AQP1.
| 4
TNF increases the amount of AQP1. 4 / 4
| 4
reach
"However, our data showed that TNF-alpha treatment strongly modulates AQP1 expression in B6-RPE07 cells in vitro."
reach
"Results of AQP1 and AQP5 determination found that HBO and TNF-alpha antagonist would upregulate the expression of AQP1 and AQP5 which was inhibited in rats with ALI."
reach
"We found that TNF-alpha induced a dose dependent down-regulation of AQP1 expression (P < 0.01) at mRNA (XREF_FIG) and protein level (XREF_FIG) and a dramatic decrease in AQP5 gene expression level (about 80% of control) with all the used doses (P < 0.001) (XREF_FIG), paralleled by a comparable trend at protein level (XREF_FIG)."
reach
"Suppression of AQP1 transcription by inflammatory TNF-alpha is restrained by KLF2."
TIMP1 affects LRP1
1 | 1 9
1 | 1 9
reach
"The characterisation of the TIMP-1 and LRP-1 interaction could be physiologically relevant in some neurodegenerative disorders."
reach
"To gain insight into the interaction between TIMP-1 and LRP-1, we considered conformational changes that occur when a ligand binds to its receptor."
reach
"Intriguingly, although both TIMP-1 mutants bound to LRP-1, F12A and K47A mutations prevented the biological effects associated with the TIMP-1 and LRP-1 interaction."
reach
"Indeed, we and others have reported that TIMP-1 directly bound to LRP-1 at the plasma membrane of mouse cortical neurons, leading to cell morphology changes XREF_BIBR, XREF_BIBR."
sparser
"TIMP-1 complex binds to LRP with high affinity and that the binding determinant for LRP appears to reside on MMP-9."
reach
"ELISA to analyse binding of TIMP-1 to LRP-1."
reach
"Thus, proMMP-9 and TIMP-1 directly interacts with LRP-1, leading to its endocytic uptake and degradation by lysosomal proteases [XREF_BIBR]."
reach
"In this study, we combined NMA and MD simulations with biological experiments to gain insight into the TIMP-1 and LRP-1 interaction."
reach
"We have thus hypothesised that alteration of these protein dynamics could modify the TIMP-1 and LRP-1 interaction."
reach
"The data obtained using in silico simulations and biological experiments highlight the relevance of protein dynamics in the TIMP-1 and LRP-1 interaction and associated biological effects."
hprd
No evidence text available
TGFB1 affects NRP1
| 8 3
| 8 3
sparser
"TGF-β1, free LAP, and LAP-TGF-β1 bind to Nrp1."
sparser
"In addition, NRP1-TGFβ1 interactions on T cells resulted in enhanced T regulator activity [ xref ]."
reach
"Tregs utilize TGF-beta1 to mediate immunosuppression, and Nrp-1 binds to TGF-beta1 to promote Treg activity XREF_BIBR."
sparser
"Previous studies have shown that NRP1 interacts with TGF-β1 during myofibroblast activation."
sparser
"Tregs utilize TGF-β1 to mediate immunosuppression, and Nrp-1 binds to TGF-β1 to promote Treg activity xref ."
sparser
"Moreover, NRP1 can bind latency-associated peptide (LAP)-TGF-β1 as well as active TGF-β1."
reach
"Our studies point to novel interactions between Nrp1 and TGF-beta1, which are potentially relevant to several biological processes such as angiogenesis, immune regulation, and tumor biology."
sparser
"Furthermore, in breast cancer cells, NRP1 can bind and activate (LAP)-TGF-β1 [ xref ]."
reach
"Previous studies have shown that NRP1 interacts with TGF-beta1 during myofibroblast activation."
sparser
"Indeed, in a recent study, Glinka et al. show that NRP1 associates with TGFRI and TGFRII to enhance TGFβ1 signaling in cancer cells [ xref ] ( xref )."
sparser
"Moreover, NRP1 associates with TGFRI and TGFRII to enhance TGFβ1 signaling in cancer cells, augmenting canonical Smad2/3 signaling xref ."
SDC4 affects CCL5
1 1 3 | 5 1
1 1 3 | 5 1
hprd
No evidence text available
reach
"Moreover, the binding of RANTES and CCL5 to SDC-1, SDC-4 and CD44 on HeLa cells was dependent on GAGs [10]."
biogrid
No evidence text available
sparser
"Taken together, these data indicate that some of the syndecan-4 molecules bound by RANTES were further oligomerized in the presence of the chemokine, and suggest that the syndecan-1 and syndecan-4 molecules bound by the chemokine are glycanated."
sparser
"Moreover, we also observed in these conditions a shift of the respective apparent molecular masses of the PGs bound by RANTES, from 50–52 kDa to 45 kDa for RANTES bound syndecan-1, and from more than 250 and 40–60 kDa, respectively, to 33 kDa for RANTES bound syndecan-4 (, lane 4 versus 3 and lane 6 versus 5)."
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
sparser
"The role of the respective associations of RANTES with syndecan-1 and syndecan-4 in signal transduction, in the pathophysiology of chemokines or GPCRs, and in HIV infection deserves further study."
sparser
"The GAGs dependence of RANTES binding to syndecan-1 and syndecan-4 does not rule out that additional subsequent protein–protein interactions may take place."
sparser
"Glycosaminidases pre-treatment of the monocyte derived-macrophages strongly decreases the binding of RANTES to syndecan-1 and syndecan-4 and also to CCR5, and abolishes RANTES binding to CD44."
PLAUR affects ITGAM
1 | 7 3
1 | 7 3
sparser
"The extensively glycosylated uPAR binds to the same C-terminal lectin domain of CD11b that had previously been shown to prime Mac-1/CR3 for cytotoxic degranulation in response to beta-glucan."
sparser
"If the uPAR-CD11b interaction is central to metastatic outgrowth, ATN-658 may be targeting the most clinically relevant and actionable aspect of metastasis."
sparser
"Although we cannot rule out a steric effect of ATN-658 on the uPAR interaction with a5β1, we hypothesize that ATN-658 may alter global integrin clustering and signaling through the inhibition of the CD11b-uPAR interaction."
reach
"CD11b, also known as Mac1, a leukocyte alpha M beta 2 -integrin receptor that binds fibrinogen, can interact with uPAR [6]."
sparser
"Although uPAR was associated with CD11b (CR3) on live resting cells, polarized migratory HRPE cells were found to dissociate uPAR from CR3; uPAR then translocated to anterior pole of the cell, where it enhanced PAI-1-inhibitable local proteolytic activity."
sparser
"The contribution of each of these interactions to tumor progression and the molecular mechanisms that are downstream of uPAR-CD11b binding remain to be elucidated and are a major focus for future studies."
reach
"Next, we investigated whether the lack of effect by the disubstituted phosphorylation like variant can be exclusively observed in cells of the myelomonocytic lineage, where uPAR interacts with the beta2-integrin CD11b and CD18 or Mac-1."
sparser
"In that regard, a peptide, M25, that blocked the uPAR-CD11b interaction was demonstrated to also inhibit the interaction of uPAR with β1 integrins (32)."
sparser
"ATN-658 blocks the CD11buPAR interaction, which leads to the hypothesis that uPAR may actually function to promote metastasis xref ."
biogrid
No evidence text available
reach
"One hypothesis is that uPAR on a tumor cell may interact with CD11b on a leukocyte in the pre-metastatic niche in trans and this interaction may mediate survival and outgrowth of the uPAR expressing tumor cells, possibly by dampening T cell or innate immune response at the metastatic site."
INPP5K affects CPD
| 11
| 11
sparser
"To further confirm the involvement of NER mechanism in the repair of CPDs and 6-4-PPs, we examined the effect of NPs pretreatment on UVB-induced CPDs and 6-4-PPs formation in NER-proficient and -deficient cells using dot blot analysis ( xref )."
sparser
"In addition, a crystal structure of DDB2 bound to (6-4)PPs or CPDs have been resolved xref , xref ."
sparser
"The enzyme binds CPD or 6-4 PPs at lesion sites and splits the dimers back to undamaged bases."
sparser
"This work left a number of questions unanswered including: (1) What types of DNA photoproducts, CPDs or 6-4 PPs, are formed at photoproduct hotspots? (2) Do the locations of mutagenic hotspots in the lacI gene correlate primarily with sites of high-frequency CPD formation or 6-4 PP formation? and (3) Does the rate of repair of CPDs and 6-4 PPs vary, and if so, what effect does this have on photoproduct hotspots becoming mutation hotspots?"
sparser
"To determine the relative frequency of formation of CPDs and 6-4 PPs in the lacI and lacZ genes, E. coli cells were UV irradiated with 0, 100, 200, or 400 J/m 2 ."
sparser
"Significant less CPDs or 6-4-PPs formation was observed in UVB-irradiated NER-proficient cells that were pretreated with Ag-NPs."
sparser
"Most photoproducts are at sites where both CPDs and 6-4 PPs are formed."
sparser
"Our previous analysis of the UV-induced DNA photoproduct distribution of the first 184 bp of the E. coli lacI gene left a number of questions unanswered, including: (1) What types of DNA photoproducts, CPDs or 6-4 PPs, are formed at photoproduct hotspots? and (2) Do the locations of mutation hotspots in the lacI gene primarily correlate with sites of high-frequency CPD formation or 6-4 PP formation? [5] ."
sparser
"Formation of CPDs and 6-4 PPs was also examined by immunostaining on the same skin specimens."
sparser
"To address these questions at the nucleotide level, a lesion-specific reiterative PE assay was utilized to determine the in vivo location and relative frequency of formation of CPDs and 6-4 PPs in the first 52 codons of the E. coli lacI gene (between nucleotides 29 and 184 on both strands) (Fig. 5A–F) ."
sparser
"Pyrimidine dimers, such as CPDs and 6-4 PPs, are formed through direct photon absorption by DNA bases ( xref ; xref )."
CD44 affects CCL5
| 8 3
| 8 3
sparser
"We observed no further reduction of cell proliferation in Ccl5 KD cells following Cd44 knockdown (Figure xref ), suggesting that this pro-survival pathway is specific to the interaction between Ccl5 and CD44, and is not regulated by other CD44 ligands."
reach
"We observed no further reduction of cell proliferation in Ccl5 KD cells following Cd44 knockdown, suggesting that this pro survival pathway is specific to the interaction between Ccl5 and CD44, and is not regulated by other CD44 ligands."
sparser
"RANTES binding to CD44 expressed on HeLa cells has been recently demonstrated ."
reach
"Moreover, the binding of RANTES and CCL5 to SDC-1, SDC-4 and CD44 on HeLa cells was dependent on GAGs [10]."
sparser
"Moreover, in these conditions, no RANTES bound CD44 was detected, which demonstrates that RANTES binding to CD44 expressed on MDM is GAGs-dependent (, lane 9)."
sparser
"In this study, we found that the interaction between Ccl5 and CD44 enhances cell survival in M-GBM cells."
reach
"In this study, we found that the interaction between Ccl5 and CD44 enhances cell survival in M-GBM cells."
sparser
"Glycosaminidases pre-treatment of the monocyte derived-macrophages strongly decreases the binding of RANTES to syndecan-1 and syndecan-4 and also to CCR5, and abolishes RANTES binding to CD44."
sparser
"In our studies, ERK activity in M-GBM cells was not reduced following Ccl5 KD (data not shown), suggesting that a distinct signaling pathway is activated following Ccl5 binding to CD44 in M-GBM cells."
sparser
"Here we show that RANTES directly binds in a glycosaminoglycan-dependent manner to SD-1, SD-4, and CD44."
sparser
"In homeostatic conditions the HP2 and HP3 gene-lists that differentiate memory cells, TIM or Flu-TM, from naive cells contain genes that are classically associated with memory such as Klrc1 , Ccl5 , Cd44 , Cxcr3 (HP3 profile) or Ifng , Asns (HP2 profile) ( xref )."
VLDLR affects LDLR
| 10
| 7
sparser
"However, we demonstrated herein that the ligand binding activity of SR-B1, LDLR and VLDLR is crucial for HCV entry, and overexpression of these lipoprotein receptors in SR/LD-DKO Huh7 cells has no effect on infection with HCV pseudotype particles ( xref )."
sparser
"ApoC1 can interact with HSPG, but it inhibits the binding of lipoprotein to LDLR or VLDL receptor (VLDLR), and blocks CE transfer [ xref ]."
sparser
"The present study was aimed to compare the mechanisms of factor VIII interaction with low-density lipoprotein receptor-related protein, megalin, low-density lipoprotein receptor, and very low-density lipoprotein receptor in order to reveal a general mode of these interactions."
sparser
"We finally show that HDL cholesterol concentrations are similar between Apoe KO and Pcsk9 / Apoe double-KO males, suggesting that the PCSK9-mediated HDL cholesterol regulation is dependent on the presence of APOE and that the role of APOE entirely depends on its ability to mediate the binding of HDL to LDLR or VLDLR."
sparser
"The binding of PCSK9 to either VLDLR or LDLR was effectively inhibited by the EGF-A domain, while the interaction with ApoER2 was less affected [ xref ]."
sparser
"Importantly, binding of PCSK9 to either LDLR or mouse VLDLR was effectively inhibited by EGF-A while binding to ApoER2 was less affected."
sparser
"This review focuses on interactions between PCSK9 and LDL receptor, VLDLR, ApoER2, CD36, CD81, and others."
VLDLR binds LDLR and LRP1. 2 / 2
| 2
sparser
"Apolipoprotein E, a key ligand for cholesterol homeostasis, has been shown to interact with LDLR, LRP and VLDLR, through these clusters."
sparser
"The binding of lipoproteins to LRP, VLDL receptor and LDL receptor can be inhibited by a 39-kDa receptor-associated protein (RAP) which could act as a modulator of receptor activity ."
VLDLR binds LDLR and LRP8. 1 / 1
| 1
sparser
"Reelin-containing culture supernatant was incubated with protein A Sepharose beads to which LDLR, VLDLR, and ApoER2 ectodomain Fc fusion protein had been bound ( Figure 2B , lanes 1–3)."
LDLR affects INSR
| 1 3 6
| 1 3 6
sparser
"Hence, we hypothesize that an interaction between LDLR and IR might occur in HUVECs."
reach
"A co-immunoprecipitation assay found that LDL receptor (LDLR) and insulin receptor (IR) formed a complex in HUVECs."
sparser
"Studies from our laboratory have demonstrated the existence of a co-localized association of IR (insulin receptor) and LDLR (LDL receptor) on the plasma membrane of biological cells xref xref ."
reach
"Thus, immunoprecipitation studies were conducted and revealed that LDLR indeed forms a complex with IR in HUVECs."
reach
"The inter association between LDLR and IR may be a reason to render LDLR functionally inactive in presence of leptin."
reach
"These results indicate that IR and LDLR probably form a complex and translocate from the cell membrane to the cytoplasm after incubation in LDL."
sparser
"Thus, immunoprecipitation studies were conducted and revealed that LDLR indeed forms a complex with IR in HUVECs."
reach
"Ramakrishnan demonstrated an intracellular co-association and plasma membrane co-localization of IR and LDLR in HepG2 cells, and insulin stimulation of the cellular expression of LDLR and enhanced its functional activity by disrupting the co-localized IR and LDLR complex 40."
reach
"It is possible that LDL may stimulate the formation of an IR and LDLR complex and subsequently promotes translocation of the complex from cell membrane to cytosol, ultimately affecting the downstream signaling pathway, including autophagy."
trips
"This co-association of LDLR with IR and their dissociation by insulin may be an important part of the regulatory mechanism of the normal physiological receptor function in a biological system."
KCNH2 affects CANX
2 | 6 2
2 | 6 2
sparser
"Furthermore, the interaction between mutant hERG proteins and chaperone proteins, Calnexin and Calreticulin, play crucial roles in these processes."
sparser
"As shown in xref , treatment with lactacystin or ALLN but not leupeptin (a lysosome inhibitor) results in an increase in the levels of core-glycosylated, immature form of hERG, Calnexin and Calreticulin."
biogrid
No evidence text available
biogrid
No evidence text available
reach
"To assess the physical interaction between hERG and Calnexin and Calreticulin, immunoprecipitation was done with anti-Calnexin or anti-Calreticulin antibody, followed by Western blot analysis with anti-hERG antibody."
sparser
"Importantly, Calnexin interacted with hERG proteins in the ER in HEK293T cells."
reach
"The calnexin and hERG interaction was preserved in reciprocal pulldown immunoaffinity assays."
sparser
"Coimmunoprecipitation assays showed that Calnexin only interacted with the ER-residing form of hERG proteins ( xref ), suggesting that Calnexin interacts with hERG proteins in the ER."
sparser
"The calnexin and hERG interaction was preserved in reciprocal pulldown immunoaffinity assays."
sparser
"Coimmunoprecipitation assays showed that Calnexin only interacted with the ER-residing form of hERG proteins ( xref ), suggesting that Calnexin interacts with hERG proteins in the ER."
IL1R1 affects IL10
| 3 7
| 3 7
sparser
"However, suppression of IL-1R gene expression by IFN-gamma and IL-10 was associated with decreased tyrosine phosphorylation and nuclear translocation of the IL-4/IL-13-inducible transcription factor, Stat6, suggesting a potential mechanism by which IFN-gamma and IL-10 may mediate their suppressive effects."
sparser
"When only IPD-WRF patients were considered; the allele distribution of IL1R1 rs2160227 (χ 2  = 5.62, p = 0.03), rs13020778 (χ 2  = 5.73, p = 0.02), rs3917267 (χ 2  = 3.72, p = 0.05) and IL4 rs2227284 (χ 2  = 3.76, p = 0.05) and the genotype distribution of IL10 rs3024509 (χ 2  = 7.70, p = 0.02), IL1R1 rs3917254 (χ 2  = 13.40, p = 0.001), NFKBIZ rs645781 (χ 2  = 13.86, p = 0.001) and rs677011 (χ 2  = 9.06, p = 0.01) variants were associated with IPD risk."
reach
"When removing 37 cases with a history of PTB (6 of which resulted in PTB in this study), the IL-1Ra x IL-6 interaction was marginally significant (P = 0.068) and the IL-1Ra x IL-10 interaction was significant (P = 0.001)."
reach
"The interaction between IL-1Ra and IL-10 was also significant, indicating that mothers with high IL-1Ra and non detectable IL-10 were at greatest risk for PTB."
reach
"When removing 33 cases with preeclampsia (5 of which resulted PTB in this study), the IL-1Ra x IL-6 interaction was marginally significant (P = 0.072) and the IL-1Ra x IL-10 interaction was significant (P = 0.003)."
sparser
"In addition to CD101 being associated with increased Treg function, IL1R1 expression has been associated with increased Treg and anti-inflammatory IL10 secretion [ xref ]."
reach
"Our results indicate that in pregnant Hispanic women aged 14 to 40 years, at 22 to 24 weeks gestation, IL-1Ra with IL-6 had a direct interaction while IL-1Ra interacted inversely with IL-10 to predict PTB."
reach
"The interaction between IL-1Ra and IL-6 remained significant in the smaller model (chi 2 = 3.91, P = 0.048) as did the interaction between IL-1Ra and IL-10 (chi 2 = 8.96, P = 0.003)."
reach
"The IL-1Ra x IL-6 interaction was not significant (P = 0.159); however, the IL-1Ra x IL-10 interaction was significant (P = 0.003)."
reach
"The interaction between IL-1Ra and IL-6 and between IL-1Ra and IL-10 was significant (Wald = 4.01, P = 0.04 and Wald = 8.84, P < 0.003, respectively) and was also predictive of PTB."
DDR1 affects ADAM10
| 6 4
| 6 4
reach
"We next examined the interaction between DDR1 and ADAM10 on the cell surface using in situ proximity ligation assay (PLA)."
reach
"DDR1 interacts with ADAM10 on the cell surface."
reach
"The data indicate that both proform and active form of ADAM10 were coimmunoprecipitated with endogenous DDR1, suggesting that endogenous ADAM10 and DDR1 form a complex on the cell surface."
sparser
"We next investigated whether endogenous ADAM10 can form a complex with endogenous DDR1 in A431 cells."
reach
"This idea is supported by our observation that collagen stimulation of A431 cells resulted in loss of endogenous ADAM10 and DDR1 complex on the cell surface (XREF_FIG)."
sparser
"Although it is not clear whether ADAM10 and DDR1 directly interact with each other, these data suggest that they are at least in the same molecular complex on the cell surface."
sparser
"The data indicate that both proform and active form of ADAM10 were coimmunoprecipitated with endogenous DDR1, suggesting that endogenous ADAM10 and DDR1 form a complex on the cell surface."
sparser
"It was shown that DDR1 and ADAM10 form a stable complex even before collagen stimulation without cleavage, and collagen binding to DS domain of DDR1 somehow renders DDR1 available for ADAM10 to cleave [ xref ]."
sparser
"We next examined interaction of endogenous DDR1 and ADAM10 in A431 cells, using PLA ( xref )."
sparser
"We next examined the interaction between DDR1 and ADAM10 on the cell surface using in situ proximity ligation assay (PLA)."
CD68 affects CD4
| 7 3
| 6 3
reach
"When purified under conditions that retain its native structure, gp110 bound CD4 and elicited antisera that neutralized SIVmac251 with high titer."
sparser
"The G allele was significantly associated with reduced CD4 + and CD68 + cells on patient muscle biopsy."
sparser
"CD4 and CD68 expression were not associated with any of the clinicopathological features in our OSCC cohort."
sparser
"Longer DFS was significantly associated with high CD4 ( p = 0.025) and high CD68 ( p = 0.007)."
reach
"Therefore, steric hindrance may account for neutralization of HIV binding by antibodies that are actually directed to epitopes topographically distinct from the site of binding of gp110 to CD4."
reach
"Table XREF_TABLE demonstrates significant positive associations between the number of 4-HNE positive cells and CD4 + cells (P = 0.04; r = 0.60), CD8 + cells (P = 0.001; r = 0.70), CD20 + cells (P = 0.04; r = 0.68) and CD68 + cells (P = 0.04; r = 0.47)."
sparser
"Intratumoral CD4 and CD68 levels were not associated with prognosis in HCC patients."
sparser
"After 24 h, we examined the association of CD4 + and CD8 + T lymphocytes (for 4T1 model) and CD68 + macrophages (for both 4T1 and MDA231-LM2 models) with CMFDA + cancer cells in the lung parenchyma ( xref , xref )."
sparser
"This tumor growth attenuation is associated with a marked increase of CD8 + and CD4 + T-cell and NK cell infiltration and escape of CD68 + macrophages and Foxp3 + Treg cells from tumor tissues."
TLR4 binds CD4 and CD68. 1 / 1
| 1
sparser
"High-resolution fluorescence microscopy showed MHCII expressing macrophages and interaction with neighboring CD68, CD4, and TLR4 positive cells."
CCL5 affects CXCR4
| 8 2
CCL5 binds CXCR4.
| 7 2
| 7 2
reach
"CCL3 and MIP1alpha binding to CCR5 STA mutant receptor reduced its ability to form heterodimer with CXCR4, while the binding of CCL5 and RANTES to CCR5 or CXCL12 and SDF -1 to CXCR4 had no apparent effect."
sparser
"To examine the effects of MKEY in healing following I/R, 8 week-old male mice were treated with MKEY or sMKEY to block specific CCL5-CXCR4 interactions."
sparser
"For example, inhibition of platelet derived CXCR4–CCL5 heterodimer formation was shown to attenuate monocyte recruitment to inflamed vessel wall inApoE −/− mice xref and also reduce aneurysm formation in those animals."
sparser
"The β chemokine Rantes, which does not bind CXCR4, had no effect on infection."
sparser
"The downregulation of CXCR4 was specific for SDF-1α and was not observed when the cells were treated with RANTES, which does not bind CXCR4 (Fig. xref , a–c )."
reach
"For example, inhibition of platelet derived CXCR4 and CCL5 heterodimer formation was shown to attenuate monocyte recruitment to inflamed vessel wall in ApoE -/- mice XREF_BIBR and also reduce aneurysm formation in those animals."
sparser
"A specifically designed compound (MKEY) to block this CCL5-CXCR4 interaction is investigated as a potential therapeutic in a model of myocardial ischemia/reperfusion (I/R) damage."
sparser
"HIV further interacts with CXCR4 and CCL3 and CCL5."
sparser
"The natural ligand for fusin is presently unknown, but fusin does not bind RANTES, MIP-1α, or MIP-1β."
CCL5 phosphorylates CXCR4.
| 1
CCL5 phosphorylates CXCR4. 1 / 1
| 1
sparser
"In addition, CCL5 augmented the CXCR4 ligand-driven ERK phosphorylation in mononuclear cells."
ADAM10 affects IL1R1
| 10
| 10
sparser
"IL-1R is activated by its ligands IL-1α and IL-1β [ xref ; xref ]."
sparser
"We also show that P. aeruginosa activates NF-κB in macrophages through both the TIR-containing adaptor protein (TIRAP)/MyD88 dependent and the TRIF-dependent pathways, and that IL-1α and IL-1β activation of IL-1R1 is an important feedback pathway in the host response to P. aeruginosa."
sparser
"The TLRs recognise conserved molecules derived from bacteria, fungi and viruses and contribute towards the innate immune response whilst the IL-1Rs are activated by the pro-inflammatory cytokines, IL-1α, IL-1β, IL-18 and IL-33 [ xref ]."
sparser
"IL-1α and high mobility group box 1 (HMGB1), which activate IL-1R1 and TLR4, respectively, were proposed to play a central role in the phenotype observed and the expression levels of both molecules were increased in IL-1R8-deficient mice."
sparser
"IL-1α and IL-1β are two major cytokines able to activate IL-1R, and both of them may be released by stressed cells."
sparser
"The other speculation is that IL-33 induces IL-1α and IL-1β (data not shown), and then IL-1α and IL-1β in turn activate IL-1R to induce iNOS in macrophages xref ."
sparser
"Membrane IL-1α activates the IL-1R1 on adjacent cells by a mechanism termed “juxtacrine”."
sparser
"Indeed, liver lysates containing IL-1α promote neutrophilic migration in matrigel. xref Moreover, in peritonitis, IL-1α is released from necrotic cells and subsequently activates IL-1R1 present at the surface of mesothelial cells."
sparser
"In addition, IL-1α, which also activates IL-1R, could contribute to the inflammatory response in vivo ."
sparser
"Following EGFR activation IL-1α is released and activates IL-1R on keratinocytes creating a second autocrine loop leading to the activation of NF-κB signaling that modifies expression of specific keratinocyte genes involved in tumor formation including increasing expression and release of CXC ligands such as CXCL1 ( xref )."
VLDLR affects THBS1
| 4 5
| 3 5
reach
"Recently, it was also shown that thrombospondin-1 binds to Apoer2 and VLDLR in the brain where it participates in the chain migration of postnatal neurons along the rostral stream."
reach
"Thrombospondin-1 binds to ApoER2 and VLDL receptor and functions in postnatal neuronal migration."
sparser
"And the proliferation of microvascular endothelial cells can be inhibited by the interaction of TSP-1 with very low density lipoprotein receptor (VLDLR) ( xref )."
sparser
"The proliferation of HMVECs could be inhibited by the interaction of TSP1 with the very low density lipoprotein receptor (VLDLR)."
sparser
"Using adenovirus-mediated gene transfer experiments, we demonstrate that the very low density lipoprotein receptor can also bind and internalize TSP-1."
reach
"Similarly, we identified Thrombospondin-1 (THBS1), which binds to LRP8 (a.k.a. APOER2) and VLDLR receptors, also receptors for reelin, and seems to play a role in murine postnatal neuronal migration, as well as in synaptogenesis XREF_BIBR, XREF_BIBR."
reach
"In contrast to these antiangiogenic phenomena, TSP-1 may also bind ApoER2 (apolipoprotein E receptor 2) and VLDLR to promote neuronal migration."
reach
"has confirmed the interaction between the VLDLR and TSP-1."
THBS1 binds VLDLR and LRP8. 1 / 1
| 1
sparser
"Recently, it was also shown that thrombospondin-1 binds to Apoer2 and VLDLR in the brain where it participates in the chain migration of postnatal neurons along the rostral stream ( xref )."
TLR4 affects ENO1
| 5 4
| 5 4
sparser
"These well-documented data led us to evaluate the binding of ENO1 to TLR4."
reach
"Further to our present results that show ENO1 binding to TLR4, it would be interesting to study the direct interaction of ENO1 TLR4 and CD14 by surface plasmon resonance technology for better understanding of ENO1 action and to highlight the specific pathways involved."
reach
"This observation suggests that citrullination does not alter ENO1 binding to TLR4 or subsequent inflammatory response, while a loss of function has been reported for other proteins such as MBP-1 in multiple sclerosis XREF_BIBR."
sparser
"In order to compare the binding of ENO1 and LPS to TLR4, we performed a competitive binding assay with ENO1 and FITC-labelled LPS using HEK-Blue hTLR4 cells."
reach
"These well documented data led us to evaluate the binding of ENO1 to TLR4."
sparser
"These results suggest that ENO1 binds TLR4 to induce a pro-inflammatory response."
sparser
"These results suggest that ENO1 binds TLR4 but not in the same manner as LPS."
reach
"These results suggest that ENO1 binds TLR4 to induce a pro inflammatory response."
sparser
"Further to our present results that show ENO1 binding to TLR4, it would be interesting to study the direct interaction of ENO1 TLR4 and CD14 by surface plasmon resonance technology for better understanding of ENO1 action and to highlight the specific pathways involved."
TGFB1 affects CD4
| 5 4
TGFB1 binds CD4.
| 5 3
| 5 3
reach
"To determine if TGF-beta1 -/- CD4 + T-cells could bind free latent TGF-beta1, unfractionated CD4 + T-cells were activated for 48h, incubated with human latent TGF-beta1, washed and then stained for human LAP (XREF_FIG)."
reach
"These findings, plus the observation that suppression requires cell-cell contact, lead us to the conclusion that CD4 + CD25 + T cell mediated immunosuppression is mediated by cell surface bound TGF-beta1."
reach
"Inasmuch as the surface bound TGF-beta was detected by Abs whose target epitopes reside in both active TGF-beta and LAP, it is likely that surface TGF-beta1-positive CD4 + CD25 + T cells bind functionally inactive TGF-beta1 still associated with LAP."
sparser
"It is known that interaction of membrane-bound TGF-β1 with CD4 + T cells induces anergy ( xref , xref )."
sparser
"Oral tolerance is specifically associated with the development of iTreg cells from naïve CD4 + T cells that are activated in the presence of TGF-β1 and CD103 + classic dendritic cells in the gut that express interferon gamma regulatory factor 8 (IRF8) ( xref ) xref , xref ."
sparser
"Later, it has been suggested that TGF-β1-induced suppression of EAE is associated with apoptosis of CD4 + T cells [ xref ]."
sparser
"TGFB1 gene expression was significantly associated with activated CD4 and CD8 T cell infiltration regardless of DNA repair status, while WNT2 was associated with T cell infiltration only in tumors with wild-type DNA repair genes (Supplementary Fig.  xref )."
sparser
"The result corresponding with the previous evidence for transactivation of the TGF-β1 by HTLV-I Tax [38] , and we considered that membrane-bound TGF-β1 was not critically associated with immunosuppressive functions of CD25 + CD4 + T cells."
TGFB1 increases the amount of CD4.
| 1
TGFB1 increases the amount of CD4. 1 / 1
| 1
reach
"In addition our results show that infection of primary naive CD4 + T cells (low TGF-beta1 expressing cells) with a constitutively active GLI2 lentivirus enhances TGF-beta1 transcription."
IL1B affects CD44
| 2 7
IL1B increases the amount of CD44.
| 7
IL1B increases the amount of CD44. 7 / 7
| 7
reach
"Therefore, it is very likely that CD44 is related to hyaluronic acid production in human uterine cervix.Our study is the first report that IL-1beta increases the expression of CD44 mRNA in cultured human cervical fibroblasts."
reach
"IL-1beta, at concentrations from 1 to 100 pg/ml, stimulated the expression of CD44 mRNA in a dose dependent manner."
reach
"Expression of CD44 mRNA induced by interleukin-1beta in human cultured uterine cervical fibroblasts."
reach
"Role of activating protein-1 and high mobility group-I (Y) protein in the induction of CD44 gene expression by interleukin-1beta in vascular smooth muscle cells."
reach
"Northern analysis showed that IL-1beta promoted a dose- and time dependent induction of CD44 mRNA which reached 6.6-fold after 48 h, and nuclear run-on analysis showed that IL-1beta increased the rate of CD44 gene transcription within 8 h of stimulation."
reach
"Regulation of CD44 gene expression by the proinflammatory cytokine interleukin-1beta in vascular smooth muscle cells."
reach
"TG2 overexpression in MCF7 cells increased the surface expression of breast cancer stem cell marker CD44, and IL-1beta stimulation of MCF7_TG2 breast cancer cells further increased CD44 expression (Additional file 1 : Figure S3)."
IL1B binds CD44.
| 2
| 2
sparser
"Despite lack of increased expression of CD44, or expression of novel splice variants, we have demonstrated increased binding of exogenous fl-HA by CD44 following stimulation with either IL-1β or 25mM -glucose."
sparser
"Furthermore, blunted crystal phagocytosis was associated with attenuated induction of IL-1β expression and production by CD44 deficient macrophages."
GRN affects GFRA2
| 7 2
| 7 2
sparser
"Functional studies also showed that PGRN binds to GFRA2 in vitro."
reach
"Co-immunoprecipitation experiments in HEK293T cells were done to test for a direct interaction between GFRA2 and progranulin."
sparser
"We next hypothesized that GFRA2 might directly interact with PGRN and serve as a receptor for PGRN."
sparser
"Co-immunoprecipitation experiments in HEK293T cells were performed to test for a direct interaction between GFRA2 and PGRN"
sparser
"No effect of rs36196656 on plasma and cerebrospinal fluid PGRN levels was detected by ELISA; however, co-immunoprecipitation experiments in HEK cells did suggest a direct binding of PGRN and GFRA2."
sparser
"In-vitro, we obtained evidence of a direct binding of PGRN to GFRA2 which could suggest that GFRA2 may be a signaling receptor for PGRN; however, future experiments both in vitro and in vivo will be needed to determine the functional consequences of this interaction."
sparser
"Co-immunoprecipitation experiments in HEK293T cells were done to test for a direct interaction between GFRA2 and progranulin."
reach
"No effect of rs36196656 on plasma and CSF progranulin concentrations was detected by ELISA; however, co-immunoprecipitation experiments in HEK293T cells did suggest a direct binding of progranulin and GFRA2."
sparser
"No effect of rs36196656 on plasma and CSF progranulin concentrations was detected by ELISA; however, co-immunoprecipitation experiments in HEK293T cells did suggest a direct binding of progranulin and GFRA2."
VEGFA affects CRIM1
| 5 3
| 5 3
sparser
"It has also been shown that CRIM1 is able to interact with VEGFA, suggesting that CRIM1 modulates the delivery of VEGFA from the podocytes to the glomerular endothelial cells, thus regulating the release of this growth factor from the site of production [ xref ]."
reach
"In the current study, based on the known Vegfa binding by Crim1 and the expression of Crim1 in retinal vasculature, we tested the hypothesis that Crim1 is involved in the autocrine activity of Vegfa."
reach
"Based on known Vegfa binding by Crim1 and Crim1 expression in retinal vasculature, where angiogenesis is known to be Vegfa dependent, we tested the hypothesis that Crim1 is involved in the regulation of Vegfa signaling."
reach
"Our previous work showed that Crim1 binds and regulates VEGF-A activity in vivo, with Crim1 KST264 and KST264 displaying excessive VEGF-A diffusion away from the podocytes of the renal glomerulus (where Crim1 and VEGF-A are co-expressed), resulting in increased activation of VEGFR-2 in adjacent vascular endothelial cells."
sparser
"In the current study, based on the known Vegfa binding by Crim1 ( xref ) and the expression of Crim1 in retinal vasculature, we tested the hypothesis that Crim1 is involved in the autocrine activity of Vegfa."
sparser
"Based on known Vegfa binding by Crim1 and Crim1 expression in retinal vasculature, where angiogenesis is known to be Vegfa dependent, we tested the hypothesis that Crim1 is involved in the regulation of Vegfa signaling."
sparser
"Another study has provided evidence that Crim1 can physically bind signaling ligands such as Vegfa, Pgf or Pdgf before their secretion ( xref )."
sparser
"Combined, these data support a model in which CRIM1 regulates VEGFA autocrine activity in the previously defined ‘private loop’ ( xref ) and is consistent with the observation that Crim1 can form physical complexes with Vegfa ( xref )."
THBS1 affects ITGB3
2 2 4 |
THBS1 binds ITGB3.
2 2 2 |
2 1 2 |
biogrid
No evidence text available
biogrid
No evidence text available
hprd
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
1 |
hprd
No evidence text available
THBS1 activates ITGB3.
2 |
THBS1 activates ITGB3. 2 / 2
2 |
omnipath
No evidence text available
omnipath
No evidence text available
TGFB1 affects ITGB6
3 1 3 | 1
TGFB1 binds ITGB6.
1 3 | 1
1 2 | 1
hprd
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
sparser
"Furthermore, our data also demonstrated that histone acetyltransferase (HAT) CBP mediated histone H3 and H4 hyperacetylation, and RNA Polymerase II recruitment to ITGB6 promoter, facilitated the binding of transcription factor JunB to ITGB6 promoter after TGF-β1 stimulation."
1 |
omnipath
No evidence text available
TGFB1 increases the amount of ITGB6.
3 |
Transcriptionally active TGFB1 increases the amount of ITGB6. 3 / 3
3 |
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
CD47 affects CD274
| 8
| 8
sparser
"We applied ChIP (Chromatin ImmunoPrecipitation)-Seq analysis to mouse MYC T-ALL cells ( xref ) and the human B cell line P493-6 ( xref , xref ) and found high levels of MYC bound to the promoter regions of the genes coding for CD47 and PD-L1 ( xref , xref )."
sparser
"Mechanistically, MYC was shown to bind to the promoters of CD47 and PD-L1 as measured by chromatin immune-precipitation followed by sequencing (ChIP-Seq) [ xref ]."
sparser
"Oncogenic levels of MYC bound the CD47 and PD-L1 gene promoters in human osteosarcoma U2OS cells, whereas low levels of MYC did not ( xref )."
sparser
"Casey et al revealed that the MYC oncogene can regulate the antitumor immune response by directly binding to the promoters of the CD47 and programmed death ligand 1 (PD-L1) genes. xref Interleukin (IL)-6 has been demonstrated to upregulate CD47 expression on hepatoma cells by activating the signal transducer and activator of transcription 3 (STAT3) pathway. xref In addition, LMP1 upregulated c-myc via IL-6 induction followed by Jak3/STAT3 activation xref and it also upregulated PD-L1 via the STAT3, activator protein (AP)-1, and nuclear factor (NF)-kappa B pathways. xref Therefore, we infer that LMP1 may upregulate CD47 expression via the c-myc/IL-6/STAT3 pathway."
sparser
"MYC was found to bind directly to the promoters of the CD47 and PD-L1 genes."
sparser
"A recent report indicated that the oncogenic function of c-MYC may be mediated, at least in part, through induction of PD-L1 and the phagocytosis-inhibitory protein CD47 on the surface of tumor cells through direct binding of MYC to the promoter regions of CD274 and CD47 ( xref )."
sparser
"Direct binding of Myc with the promoters of the CD47 and PD-L1 genes has been identified. xref Suppression of Myc in mouse and human tumor cells decreased the levels of CD47 and PD-L1 mRNA and protein, while Myc inactivation attenuated CD47 and PD-L1 expression and enhanced the antitumor immune response."
sparser
"Notably, MYC activation of the CD47 and PD-L1 genes appears to require higher levels of MYC binding to the CD47 and PD-L1 promoters compared with genes involved in normal cell growth; they may, therefore, represent promoters that have been “invaded” by oncogenic MYC levels ( xref , xref )."
CD44 affects ADAM10
| 5 3
| 4 3
sparser
"We demonstrated by co-immunoprecipitation analysis that the ADAM10 associated with CD44 in control, untreated chondrocytes was predominately the 90 kD immature isoform whereas following IL-1β + OSM treatment, CD44 complexes contained the mature 70 kD isoform of ADAM10."
reach
"To further validate these findings, we examined the potential of a physical interaction between CD44 and ADAM10 using co-immunoprecipitation."
sparser
"In addition, simvastatin-mediated inhibition of cholesterol biosynthesis and the dissolution of lipid rafts is likely responsible for preventing interactions between CD44 and ADAM10, thereby blocking CD44 cleavage."
sparser
"Pre-incubation with simvastatin prior to treatment with IL-1β + Oncostatin M decreased the level of CD44 fragmentation, decreased the proportion of CD44 that transits into the lipid raft fractions, decreased ADAM10 activity and diminished the interaction between CD44 and ADAM10."
sparser
"To further validate these findings, we examined the potential of a physical interaction between CD44 and ADAM10 using co-immunoprecipitation."
reach
"Second, simvastatin inhibits the interaction between CD44 and ADAM10 due to a decrease in the proportion of CD44 existing in lipid raft.CD44 cleavage occurs in a variety of tissues and is mediated by membrane-type MMPs including MT1-MMP, ADAM10 and ADAM17 [7,25] although many recent studies point to ADAM10 as a major sheddase [7,29]."
reach
"In addition, we showed that simvastatin inhibited the generation of the mature form of ADAM10, ADAM10 activity as well as the interaction of CD44 and ADAM10.We demonstrated by co-immunoprecipitation analysis that the ADAM10 associated with CD44 in control, untreated chondrocytes was predominately the 90 kD immature isoform whereas following IL-1beta + OSM treatment, CD44 complexes contained the mature 70 kD isoform of ADAM10."
| 1
sparser
"Calcium influx augmented the release of exosomes containing functionally active forms of ADAM10 (a disintegrin and metalloprotease 10) and ADAM17 [TACE (tumour necrosis factor a-converting enzyme)] as well as CD44 and L1 cytoplasmic cleavage fragments."
ADAM10 affects NOTCH1
8 |
ADAM10 binds NOTCH1.
4 |
4 |
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
ADAM10 activates NOTCH1.
4 |
ADAM10 activates NOTCH1. 4 / 4
4 |
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
TNF affects CXCR4
4 | 3
TNF increases the amount of CXCR4.
4 |
Transcriptionally active TNF increases the amount of CXCR4. 4 / 4
4 |
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
TNF binds CXCR4.
| 3
| 3
sparser
"At one month of evolution, prehepatic portal hypertensive-rats present increased SDF-1 alpha levels in the hippocampus and cerebellum associated with increased TNF-α and CXCR4 levels in the hippocampus [ xref ]."
sparser
"The resulting MUC1 interacts with activated CXCR4 to downregulate TNFα expression."
sparser
"Mammalian CXCR4 forms with TNFalpha, several HSP proteins and GDF5 an activation cluster involved in monocyte LPS signal transduction [ xref ] and also acts synergistically with the colony-stimulating factor mediated mobilization of hematopoietic stem cells [ xref , xref ]."
TNF affects ABCA1
1 | 6
TNF increases the amount of ABCA1. 6 / 6
| 6
reach
"The expression of ABCA1 was increased by 5 ng/ml or 10 ng/ml TNF-alpha compared with control group, and was inhibited by 20 ng/ml TNF-alpha."
reach
"However, the role for TNF remains controversial since other studies have shown that TNF enhances ABCA-1 expression and the efflux of cholesterol in peritoneal macrophages stimulated with ApoA-I and since evidences from studies performed in murine models are also contentious."
reach
"Interestingly, TNFalpha treatment increased ABCA1 promoter activity and ABCA1 mRNA levels, and increased liver X receptor alpha protein expression, but had no effect on retinoid X receptor alpha and retinoic acid receptor alpha levels."
reach
"Therefore they concluded that TNF-alpha signaled primarily through NF-kappaB to induce ABCA1 expression in macrophages."
reach
"Thus, TNFalpha signals primarily through NF-kappaB to induce ABCA1 expression in macrophages."
reach
"In our study, the induction of ABCA1 expression by TNF-alpha was prevented by pre-treatment of GW9662."
Transcriptionally active TNF increases the amount of ABCA1. 1 / 1
1 |
biopax:ctd
No evidence text available
TLR4 affects MIF
| 5 2
| 5 2
sparser
"No evidence of an epistatic interaction between these TLR4 polymorphisms and MIF polymorphisms was found."
reach
"XREF_BIBR Under lipopolysaccharide (LPS) stimulation, MIF, CD74 and toll like receptor 4 (TLR4) could form a complex that significantly stimulates cell proliferation."
reach
"In view of previously published work suggesting a role for MIF in the expression level of TLR4 XREF_BIBR, XREF_BIBR, these results suggest an association between TLR4 and MIF in patients with autoimmune disease."
sparser
"Interactions between MIF, TLR4 and TCR/CD3 are complex and understanding their nature could have translational impacts on immunomodulatory approaches for treating inflammatory and autoimmune diseases."
sparser
"Additionally, no evidence for gene-gene interaction between TLR4 polymorphisms and the previously associated MIF gene polymorphisms was found (p = 0.40)."
sparser
"Upregulation of MIF, CD74 and TLR4 are associated with increasing clinical stage and provide an opportunity as novel gastric cancer chemoprevention and/or treatment strategy."
sparser
"These findings herein suggest that the cytoprotective functions of HO-1 in LPS-induced lung injury are associated with negative regulation of lung MIF and TLR4-induced inflammatory response."
THBS1 affects LRP8
| 2 5
| 1 5
reach
"In contrast to these antiangiogenic phenomena, TSP-1 may also bind ApoER2 (apolipoprotein E receptor 2) and VLDLR to promote neuronal migration."
reach
"Similarly, we identified Thrombospondin-1 (THBS1), which binds to LRP8 (a.k.a. APOER2) and VLDLR receptors, also receptors for reelin, and seems to play a role in murine postnatal neuronal migration, as well as in synaptogenesis XREF_BIBR, XREF_BIBR."
reach
"Recently, it was also shown that thrombospondin-1 binds to Apoer2 and VLDLR in the brain where it participates in the chain migration of postnatal neurons along the rostral stream."
reach
"Blake et al reported that TSP-1 promoted neural cell migration by binding to ApoER2 in postnatal neuronal migration [XREF_BIBR]."
sparser
"Similarly, we identified Thrombospondin-1 ( THBS1 ), which binds to LRP8 (a."
reach
"Thrombospondin-1 binds to ApoER2 and VLDL receptor and functions in postnatal neuronal migration."
THBS1 binds VLDLR and LRP8. 1 / 1
| 1
sparser
"Recently, it was also shown that thrombospondin-1 binds to Apoer2 and VLDLR in the brain where it participates in the chain migration of postnatal neurons along the rostral stream ( xref )."
TGFB1 affects ITGAV
7 |
3 |
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
1 |
omnipath
No evidence text available
1 |
omnipath
No evidence text available
1 |
omnipath
No evidence text available
1 |
omnipath
No evidence text available
SPP1 affects SDC4
| 4 3
| 4 3
reach
"Therefore, we asked whether the binding of syndecan-4 to OPN is dependent on HS or CS chains."
reach
"OPN and syndecan-4 proteins were immunoblotted in the bound fraction from the anti-syndecan-4 antibody coupled column but not from the control column, indicating the presence of association between OPN and syndecan-4."
sparser
"We further tested whether the interaction of OPN and syndecan-4 occurs under physiological conditions."
reach
"Therefore, it is of importance to examine whether syndecan-4 can associate with OPN and modulate OPN function."
sparser
"Therefore, we examined whether syndecan-4 binds to OPN in vitro."
sparser
"Therefore, it is of importance to examine whether syndecan-4 can associate with OPN and modulate OPN function."
sparser
"In addition, we confirmed the association of OPN and syndecan-4 by using genetically manipulated CHO cells transiently expressing human OPN, syndecan-4, or both OPN and syndecan-4 (Fig. S4, available at)."
SPP1 affects ITGB3
1 2 | 2 2
1 | 2 2
sparser
"Similarly, blockade of the interaction of integrin beta3 with OPN inhibited VSMC adhesion induced by OPN."
sparser
"CD44, a gene found in the dormancy expression profile which interacts with ITGB3 and osteopontin to mediate adhesion and signalling (reviewed in [ xref ] and [ xref ]), was also upregulated at the protein level (p=0.01)."
reach
"Moreover, evidence show that REL can interact with LYN and FCER1G genes and SPP1 can interact with ITGB3."
reach
"It has been shown that ITGB3 and ITGAV subunits together bind to SPP1 to generate stable adhesions between the maternal-fetal interface in pigs after the initial attachment of conceptus trophoblast to the endometrial luminal epithelium XREF_BIBR, XREF_BIBR."
hprd
No evidence text available
SPP1 binds ITGAV and ITGB3. 2 / 2
2 |
omnipath
No evidence text available
omnipath
No evidence text available
SIRPA affects PTK2B
| 2 5
| 2 5
reach
"Skaphom, ADAP and Pyk2 associate constitutively with Shps1, but become tyrosyl phosphorylated upon adhesion [34]."
reach
"Pyk2 recruitment to SHPS-1 is mediated via the interaction of Pyk2 Tyr402 and the Src in response to IGF-I."
reach
"Recruitment of FYB and SLAP -130 to SHPS-1 required SKAP55hom/R, whereas PYK2 associated with SHPS-1 independently."
reach
"Thus, Pyk2 recruitment to SHPS-1 plays an important role in regulating the IGF-I-stimulated mitogenic response."
reach
"Recruitment of Pyk2 to SHPS-1 signaling complex is required for IGF-I-dependent mitogenic signaling in vascular smooth muscle cells."
sparser
"Recruitment of FYB/SLAP-130 to SHPS-1 required SKAP55hom/R, whereas PYK2 associated with SHPS-1 independently."
sparser
"We reconstituted the interaction of SHPS-1 with either PYK2 or SKAP55hom/R ()."
LRP8 affects LDLR
| 5 2
| 4 2
reach
"This review focuses on interactions between PCSK9 and LDL receptor, VLDLR, ApoER2, CD36, CD81, and others."
reach
"Interaction between dimeric beta2GPI and LDL-R, apoER2 ' and VLDL-R was best described with a one-site binding model (half-maximal binding; approximately 20 nm for apoER2 ' and VLDL-R and approximately 300 nm for LDL-R), whereas the interaction between dimeric beta2GPI and LRP or megalin was best described with a two-site binding model, representing a high- (approximately 3 nm) and a low-affinity site (approximately 0.2 microm)."
sparser
"Association of ApoER2 and LDL receptor family with Reelin protein may also link certain neurodegenerative disorders such as Alzheimer’s dementia ( Bothwell and Giniger 2000 ; Helbecque and Amouyel 2000 ) with dysregulation of the Reelin signaling system."
sparser
"Reelin binding to Apoer2 and the very low-density-lipoprotein receptor (Vldlr), another member of the LDL receptor family, results in receptor clustering at the plasma membrane."
sparser
"The neurotrophic effects of ApoD and ApoE3 were associated with an increased expression of the low-density lipoprotein receptor and apolipoprotein E receptor 2."
sparser
"We observed a concentration-dependent binding of PCSK9 to LDLR, ApoER2 and mVLDLR ( Fig. 1 A)."
VLDLR binds LDLR and LRP8. 1 / 1
| 1
sparser
"Reelin-containing culture supernatant was incubated with protein A Sepharose beads to which LDLR, VLDLR, and ApoER2 ectodomain Fc fusion protein had been bound ( Figure 2B , lanes 1–3)."
ITGB1 affects CD63
1 4 | 1 1
1 4 | 1 1
hprd
No evidence text available
biogrid
No evidence text available
trips
"Ameloblastin bound to CD63 and promoted CD63 binding to integrin β1."
reach
"For example, TIMP-1 promotes cell survival in erythroleukemic cells after binding with a CD44 and proMMP -9 complex receptor [XREF_BIBR, XREF_BIBR] and in breast and lung epithelial cells after interacting with a CD63 and integrin-beta 1 complex receptor [XREF_BIBR, XREF_BIBR]."
hprd
No evidence text available
hprd
No evidence text available
hprd
No evidence text available
ITGAM affects CD4
| 7
| 7
sparser
"Our data suggest that the accumulation of GM-CSF-producing CD11b + CD4 + T cells is associated with disease progression in EAE, and that early anti-VLA-4 mAb therapy can prevent the accumulation of GM-CSF + CD11b + CD4 + T cells in the CNS by administration early in the course of disease progression."
sparser
"Taken together, these data support the early use of anti-VLA-4 mAb treatment to induce neuroprotection in progressive forms of CNS autoimmune disease by blocking the accumulation of GM-CSF-producing CD11b + CD4 + T cells in the CNS."
sparser
"Protection against SLE-mediated GN in Sle123 →ApoA-I tg mice was associated with reductions in kidney infiltrating CD4 + T cells ( xref ) as well as lower CD11b + monocytic and NIMPR14 + neutrophil infiltrates ( xref )."
sparser
"We hypothesized that the impairment in CD4 + T cell stimulation associated with CD11b + cells could result from the induction of a suppressor mechanism in CD11b + cells, as suppressor macrophages that induce T cell anergy have previously been described in mice harboring patent schistosome infections xref , xref ."
sparser
"Administration of 56-5 to mice increased disease progression in an experimental autoimmune encephalomyelitis model and this was associated with a considerable increase in the infiltration of CD4(+) T-cells, CD11b(+) monocytes and F4/80(+) macrophages in the spinal cord."
sparser
"The inhibitory effect of Sema3E was associated with a reduction of pulmonary CD11b + conventional dendritic cells and regulation of CD4 + T-cell cytokine response."
sparser
"Since the accumulation of CD11b + TLR-2 + CD4 + T cells in the CNS was associated with increasing neurodegeneration, future experiments are required to assess the pathogenic role of CD11b + TLR-2 + CD4 + T cells in regards to their possible neurodegenerative effector functions."
IL1B affects CD4
| 3 4
IL1B binds CD4.
| 3 1
| 3 1
sparser
"Factors released from the interaction between IL-1β-competent myeloid cells and CD4 + T cells are highly toxic to neurons."
sparser
"In xref and xref , it seems likely that IL-1β–expressing cells were associated with CD4 + cells, suggesting that the CD4 + cells might be involved, within the wall of the aneurysm, in activating IL-1β production in the dispersed macrophages and that, in turn, these cells might be activating the CD4 + cells, possibly through the presentation of autoantigens."
reach
"For Th17 polarizing conditions, CD4 + T cells were stimulated with plate bound anti-CD3 antibody (0.5 mug/ml) and anti-CD28 antibody (1 mug/ml) (BD Pharmingen), anti-IFN-gamma (2 mug/ml), anti-IL-4 (2 mug/ml), IL-1beta (20 ng/ml), and IL-6 (20 ng/ml) (R&D systems) for 72 h. Fn14-Fc was purchased from R&D systems."
sparser
"Therefore, mPGES-1 stimulates an intercellular interaction between CD4 + T cells by upregulating the autocrine function of IL-1β in activated CD4 + T cells, which release IL-17 to facilitate axonal and myelin damage in EAE mice."
IL1B increases the amount of CD4.
| 3
IL1B increases the amount of CD4. 3 / 3
| 3
reach
"This down-regulation of CD4 expression by LPS, TNF-alpha, and IL-1 beta occurs at the level of transcription."
reach
"Conversely, neither LPS nor TNF-alpha and IL-1 beta were able to modulate surface CD4 expression on quiescent or phytohaemagglutinin (PHA)-activated lymphocytes."
reach
"However, after 24h, IL-1beta significantly increased surface expression of the positive CD4 + T-cell co-stimulatory molecule, ICOS-L 57."
CXCR4 affects CD63
| 4 3
| 4 3
sparser
"These findings suggest that CD63 interacts with CXCR4 through the N-linked glycans-portion of the CD63 protein and that the complex induces direction of CXCR4 trafficking to the endosomes/lysosomes, rather than to the plasma membrane."
reach
"Either CD63 or CD63DeltaN formed a complex with CXCR4 at the Golgi apparatus and the late endosomes, while CD63 GD mutants lost the ability to form a complex with CXCR4 exclusively at the Golgi apparatus."
sparser
"Indeed, Yoshida et al. showed that CD63 had three N-linked glycosylation sites [ xref ], that CD63 interacts with CXCR4 through the N-linked glycans-portion of the CD63 protein and that the complex induces the direction of CXCR4 trafficking to the endosomes/lysosomes, rather than to the plasma membrane."
sparser
"In the present study, it was found that CD63 and its mutant efficiently interact with CXCR4 in live cells and that CD63-induced downregulation and interaction are significantly abrogated by the N-linked glycosylation inhibitor, TM."
reach
"Indeed, Yoshida et al. showed that CD63 had three N linked glycosylation sites [XREF_BIBR], that CD63 interacts with CXCR4 through the N linked glycans-portion of the CD63 protein and that the complex induces the direction of CXCR4 trafficking to the endosomes and lysosomes, rather than to the plasma membrane."
sparser
"Either CD63 or CD63DeltaN formed a complex with CXCR4 at the Golgi apparatus and the late endosomes, while CD63 GD mutants lost the ability to form a complex with CXCR4 exclusively at the Golgi apparatus."
reach
"These findings suggest that CD63 interacts with CXCR4 through the N linked glycans-portion of the CD63 protein and that the complex induces direction of CXCR4 trafficking to the endosomes and lysosomes, rather than to the plasma membrane."
CXCR4 affects CD164
| 4 3
| 4 3
sparser
"The knockdown of CD164 expression was associated with decreased chemokine receptor CXCR4 expression HCT116 cell surface and immunoprecipitation studies showed that CD164 formed complexes with CXCR4."
reach
"The knockdown of CD164 expression was associated with decreased chemokine receptor CXCR4 expression HCT116 cell surface and immunoprecipitation studies showed that CD164 formed complexes with CXCR4."
sparser
"We report here that CD164 is associated with CXCR4 in C2C12 myoblasts."
sparser
"On presentation of CXCL12 on fibronectin, CD164 associates with CXCR4, an interaction that temporally follows the association of CXCR4 with the integrins VLA-4 and VLA-5."
reach
"Moreover, it was reported that sialomucin endolyn (CD164), an adhesion receptor that regulates the adhesion of CD34 + cells to BM stroma and their recruitment into the cycle, associates with CXCR4, an interaction that follows the association of CXCR4 with the integrins VLA-4 and VLA-5 [XREF_BIBR]."
reach
"Here, we provide evidence that the sialomucin endolyn (CD164), an adhesion receptor that regulates the adhesion of CD34+ cells to bone marrow stroma and the recruitment of CD34+ CD38 (lo/-) cells into cycle, associates with CXCR4."
sparser
"The knockdown of CD164 expression was associated with decreased chemokine receptor CXCR4 expression HCT116 cell surface and immunoprecipitation studies showed that CD164 formed complexes with CXCR4."
VEGFA affects PDGFRA
| 4 2
| 4
sparser
"VEGF-A binds to both PDGFRalpha and PDGFRbeta and induces tyrosine phosphorylation that, when inhibited, results in attenuation of VEGF-A-induced MSC migration and proliferation."
sparser
"It has been known that VEGF-A binds to both PDGFR-α and PDGFR-β and induces tyrosine phosphorylation ( xref )."
sparser
"VEGF-A binds to both PDGFRα and PDGFRβ and induces tyrosine phosphorylation that, when inhibited, results in attenuation of VEGF-A–induced MSC migration and proliferation."
sparser
"Having established by several methods that VEGF-A 165 –stimulated tyrosine phosphorylation of both PDGFRs, we went on to confirm VEGF-A 165 binding to cell surface PDGFRα and PDGFRβ using a cross-linking approach."
| 2
reach
"VEGF-A 165 bound to both PDGFRalpha and PDGFRbeta."
reach
"After VEGF-A 165 stimulation, PDGFR immunoprecipitation, and immunoblot analysis, a distinct association between VEGF-A and PDGFRalpha or PDGFRbeta was demonstrated (XREF_FIG)."
TNF affects IL6ST
| 1 5
TNF increases the amount of IL6ST.
| 4
TNF increases the amount of IL6ST. 4 / 4
| 4
reach
"Enhancement of IL-6 receptor beta chain (gp130) expression by IL-6, IL-1 and TNF in human epithelial cells."
reach
"On the other hand, both TNF-alpha and LPS upregulate gp130 surface expression and its release from vascular endothelial cells."
reach
"Moreover, we found that TNF-alpha and IL-6 secreted by activated Kupffer cells dramatically increased TNFR1 and GP130 expression in hepatocytes compared to untreated control cells."
reach
"In RASFs, the expression of gp130 subunit was significantly upregulated by TNFalpha while the IL12Rbeta2 receptor subunit was expressed neither constitutively nor induced by TNFalpha."
TNF binds IL6ST.
| 1 1
| 1 1
sparser
"There were no significant associations between cord blood IL-6, TNF and gp130 and polymorphisms of the encoding genes."
reach
"Additionally, challenging hepatocyte specific gp130 knockout animals with lipopolysaccharides (LPS) lead to an onset of acute liver injury with an increase of hepatocyte apoptosis associated with elevated tumor necrosis factor alpha (TNF-alpha) serum levels and reduced nuclear factor kappaB (NF-kappaB) activation in hepatocytes."
TNF affects CD44
| 1 4 1
| 1 4 1
sparser
"Recent clinical work using TNF-alpha inhibitors for the treatment of ovarian cancer makes the study of TNF-alpha interactions with CD44 crucial to determining treatment a success or a failure."
sparser
"A positive correlation was also obtained between TNF-α and CD44 expression, and co-upregulation of TNF-α and CD44 was associated with primary tumor stage, distant metastasis, and poor prognosis."
trips
"Tumor necrosis factor-inducible gene 6 interacts with CD44, which is involved in fate-change of hepatic stellate cells."
reach
"Tumor necrosis factor inducible gene 6 interacts with CD44, which is involved in fate-change of hepatic stellate cells."
sparser
"Ifn -γ which is also upregulated in B6 but notCcr2 −/− mice has also been shown to enhance TNF-α mediated binding of CD44 to HA xref ."
sparser
"Real-time PCR analysis showed that the treated A549 cells highly over expressed TNF-α, which was associated with a significant reduction of CD44 gene expression levels (p  <  0.05)."
TNF affects ANTXR1
| 6
| 6
sparser
"Upon tumor necrosis factor α (TNF-α) stimulation, MOAP-1 associates with the TNF receptor 1, subsequently, RASSF1A was recruited to this complex and then participates in the death receptor-dependent apoptosis[ xref ]."
sparser
"It was previously shown xref that freshly isolated murine peritoneal macrophages underwent apoptosis upon HSV-2 infection, which was associated with the up-regulation of Fas and TNF-receptor 1 (TNF-R1) pathways."
sparser
"Upon TNF stimulation, TNF receptor 1 binds TRADD, which in turn recruits TRAF2, cIAP1 and cIAP2, and subsequently the linear ubiquitin assembly complex (LUBAC) [ xref ]."
sparser
"This is surprising as another study showed OUA to block the activation of the TNF/NF-κB pathway by interfering with the interaction between TNF receptor 1 and TRADD in HeLa cell cultures [ xref ]."
sparser
"TNF binds to the extracellular domains of TNF receptor 1 (TNFR1) and collects TNFR1-associated death domain protein (TRADD) to the cytoplasm death domain of the TNFR1."
sparser
"One study showed that TNF binds to TNF receptor 1 (TNFR1) and riboflavin kinase (RFK) to activate NOX1 leading to cell death [ xref ]."
TNF affects AGTR1
2 | 4
TNF binds AGTR1.
| 4
| 4
sparser
"The aim of the present study was to examine plasma AT1-AA titer in severe preeclampsia and determine whether change in AT1-AA level was associated with TNF-α and VEGF."
sparser
"Moreover, TNF- α –induced hypertension (97±2 to 112±2 mm Hg; P <0.05) in pregnant rats was associated with AT1-AA production (TNF- α rats 9.2±2.3 U versus NP rats 1.0±0.8 U; P <0.05)."
sparser
"We have recently reported that the hypertension in response to placental ischemia is associated with increases in plasma levels of sFlt-1, sEng, TNF-α, and AT1-AA. xref , xref We also demonstrated that chronic infusion of TNF-α or AT1-AA, at rates to mimic the increase of these factors observed in placental ischemic pregnant rats, significantly contributes to elevated blood pressures. xref – xref Moreover, we found that chronic infusion of TNF-α in pregnant rats stimulated the production of AT1-AA and the blood pressure response to TNF-α or AT1-AA were attenuated by treatment with an angiotensin type 1 receptor antagonist. xref , xref Although these findings suggest an important interaction between TNF-α and AT1-AA in the blood pressure response to placental ischemia, it is unknown whether these factors interact in regulating sFlt-1 and sEng production."
sparser
"Moreover, TNF-alpha-induced hypertension (97+/-2 to 112+/-2 mm Hg; P<0.05) in pregnant rats was associated with AT1-AA production (TNF-alpha rats 9.2+/-2.3 U versus NP rats 1.0+/-0.8 U; P<0.05)."
TNF increases the amount of AGTR1.
2 |
Transcriptionally active TNF increases the amount of AGTR1. 2 / 2
2 |
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
TGFB1 affects ITGB8
1 3 | 1 1
1 2 | 1 1
hprd
No evidence text available
sparser
"Previous studies have shown that ITGB8 could interact with TGF-β1 at the fetomaternal interface during early pregnancy []."
reach
"Previous studies have shown that ITGB8 could interact with TGF-beta1 at the fetomaternal interface during early pregnancy [35]."
omnipath
No evidence text available
omnipath
No evidence text available
1 |
omnipath
No evidence text available
ITGAM affects TLR4
| 1 5
ITGAM increases the amount of TLR4.
| 3
ITGAM increases the amount of TLR4. 3 / 3
| 3
reach
"To further test if TLR4 expressing skin-resident immune cells are involved in the hBD2 induced itch, we conditionally ablated TLR4 expression in the myeloid cell lineage by generating the LysM cre; Tlr4 f/f mice as we found that TLR4 was primarily expressed by CD11b + / CD11c - dermal macrophages besides a small percentage of dendritic cells and eosinophils (see XREF_SUPPLEMENTARY in this article 's Online Repository at www.jacionline.org)."
reach
"As shown in XREF_FIG, there was no difference in the percentage of lung CD11b + DCs that expressed TLR4 or TLR5, or the mean fluorescence intensity (MFI) of TLR4 and TLR5 expression by lung CD11b + DCs, in DNA-PKcs fl/fl as compared to DNA-PKcs fl/fl; Cd11c-Cre mice."
reach
"Thus, modified expression of TLR4 or TLR5 by lung CD11b + DCs does not appear to mediate impaired T cell priming to HDM in DNA-PKcs fl/fl; Cd11c-Cre mice."
ITGAM binds TLR4.
| 1 2
| 1 2
reach
"Binding of dCyaA to CD11b and CD18 integrin may favor a TLR4 and CD11b interaction, or dCyaA could directly interact with TLR4 via its acyl chains."
reach
"The interaction between LPS, CD11b, and TLR4 is still insufficiently understood."
sparser
"At the moment, we do not know how NE and CD11b or TLR4 interact to promote the up-regulation of phagoctyosis, but our results of co-localization support the hypothesis that Leishmania induces the rearrangement of cell surface components in macrophages, bringing CR3 and NE to a common signaling platform."
IL15 affects CD4
| 4 2
| 4 2
reach
"There was a significant inverse association between serum IL-15 and CD4 + total memory and central memory T cells (p = 0.034 and p = 0.037), _ FIG."
sparser
"IL-15 levels were inversely associated with CD4 + total memory and central memory T cells."
sparser
"It was surprising that increased levels of plasma IL-15 was not associated with increased proliferation or activation of memory CD4 T cells, but significantly correlated with the extent of viral infection in these cells."
reach
"We observed that in mice given food antigen, cooperation between IL15 and CD4 (+) T cells is necessary and sufficient to activate CD8 (+) T cells and damage the small intestine."
sparser
"CD4 + T cells stimulated with cytokine-matured DC expressed high levels of CTLA-4, whereas IL-15 or p38i treatment of DC was associated with reduced CD4 + T cell expression of CTLA-4, particularly following combined IL-15/p38i treatment of DC ( xref , left)."
sparser
"Notably, during HIV-1 infection and other lymphopenic conditions, homeostatic proliferation of CD4 T cells is associated with elevated serum concentrations of γc-cytokines IL-7 and IL-15[ xref , xref , xref ]."
IL10 affects IFNGR1
| 6
IL10 inhibits IFNGR1. 6 / 6
| 6
sparser
"Moreover, IL-10 may directly inhibit proliferation and production of IL-2, IFN-γ, IL-4, IL-5, and TNF-α by CD4 + T cells, thus it regulates both Th1 and Th2 immune responses ( xref )."
sparser
"Inhibition of both IL-12 and IFN-γ by IL-10 promotes development of Th2 type cytokine pattern."
sparser
"Moreover, IL-10 negatively inhibited the pro-inflammatory cytokines IFN-γ, TNF-α, IL-12β, and IL-2 that play roles in adaptive immune response [ xref ]."
sparser
"Traditionally, the cytokines IL-2 and IFN-γ are inhibited by IL-10 [ xref ]."
sparser
"To assess its function, rdIL-10 was produced in human embryonic kidney 293 cells and its bioactivity was demonstrated through IL-10-induced inhibition of proinflammatory cytokine mRNA expression IFN-γ, TNF-α, and IL-2 of Con A-stimulated PBMC."
sparser
"IL-10 inhibits TNF-α, IL-1β, or IFN-γ induced surface ICAM-1 protein expression in astrocytes, but does not have any effect on mRNA steady-state levels, suggesting translational or post-translational regulation of ICAM-1 ()."
CCL5 affects GPR75
6 |
CCL5 binds GPR75.
3 |
3 |
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
CCL5 activates GPR75.
3 |
CCL5 activates GPR75. 3 / 3
3 |
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
ADAM17 affects ITGB1
6 |
ADAM17 binds ITGB1.
3 |
3 |
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
ADAM17 activates ITGB1.
3 |
ADAM17 activates ITGB1. 3 / 3
3 |
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
TNF affects NOTCH1
| 4 1
| 4 1
sparser
"By linking Notch and TNFα it was shown that (1) Notch-1 mucosal expression differs in inflamed and non-inflamed mucosa and increases in response to anti-TNFα treatment; (2) Notch-1 function is regulated by TNFα inhibitors; (3) Notch-1 binds to TNFα; and (4) Notch-1 inhibition prevents anti-TNFα-induced T cell cycle arrest but not apoptosis."
sparser
"In parallel with our findings, Daniel et al. [43] reported that TNF-α inhibited Mfn2 expression in cells and that Notch1 could directly bind to TNF-α [44] , supporting positive regulation of Mfn2 by Notch1 via TNF-α inhibition."
sparser
"TNF promoted p52/RELB binding to NICD, which enhanced binding at the RBPjκ site within the Hes1 promoter."
reach
"By linking Notch and TNFalpha it was shown that (1) Notch-1 mucosal expression differs in inflamed and non inflamed mucosa and increases in response to anti-TNFalpha treatment; (2) Notch-1 function is regulated by TNFalpha inhibitors; (3) Notch-1 binds to TNFalpha; and (4) Notch-1 inhibition prevents anti-TNFalpha-induced T cell cycle arrest but not apoptosis."
sparser
"The upregulation of constitutive nuclear factor NF-κB, as well as CD30, CD40, tumor necrosis factor (TNF)-α, and Notch1 interactions contributes to these processes ( xref )."
TNF affects NGFR
| 5
| 5
sparser
"The only exception is NGFR, which binds non‐TNF‐like ligands and signals as a dimer ( Locksley et al. , 2001 )."
sparser
"4-lBB and OX-40 are members of tumor necrosis factor (TNF)-nerve growth factor receptor subfamily that bind TNF receptor-associated factors and activate nuclear factor lCB. ~o!."
sparser
"This is an intriguing possibility in light of the apparent interaction between TNF and p75NTR, since TACE and MMPs are involved in proteolytic cleavage-related modulation of signaling in both systems [ xref , xref , xref ]."
sparser
"Among the envelope glycoproteins, gD is a potential candidate because it has been shown to interact with a member of the tumor necrosis factornerve growth factor receptor family [53,54] ."
sparser
"Thus, NgR1 forms a complex with Leucine rich repeat and Ig domain containing 1 (LINGO-1) and tumor necrosis factor family member (TROY) and/or low affinity nerve growth factor receptor (p75)."
TLR4 affects SIRPA
| 1 4
| 1 4
reach
"Collectively, these results demonstrate that SIRPA inhibits TLR4 expression and directly interacts with TLR4."
reach
"31 In our study, we found that the expression of TLR4 was downregulated by SIRPA after pressure overload and that SIRPA can directly interact with TLR4."
sparser
"In addition, CD47 is the ligand of SIRPA, and CD47/SIRPA interaction is the major determinant of escape from phagocyte-mediated cell clearance. xref In our study, we demonstrated that SIRPA physically interacted with TLR4; therefore, SIRPA may behave similarly to CD14, xref which promotes the endosome/lysosome-mediated degradation of TLR4."
reach
"43 In our study, we demonstrated that SIRPA physically interacted with TLR4; therefore, SIRPA may behave similarly to CD14, 42 which promotes the endosome and lysosome mediated degradation of TLR4."
reach
"We then performed coimmunostaining and coimmunoprecipitation experiments to validate whether SIRPA physically interacts with TLR4."
TLR4 affects CD274
| 5
| 5
sparser
"In the present study, we assayed the expression level and association of TLR4 and PD-L1 in lung cancer tissues and evaluated the predicting role of TLR4 in cancer cells on postoperative survival in NSCLC patients receiving pulmonary lobectomy."
sparser
"TLR4 expression was closely associated with PD-L1 expression."
sparser
"As shown in Figure xref C, the TLR4 expression level was significantly associated with PD-L1 level ( r  = 0.545, P  < 0.0001)."
sparser
"Taken together, we conclude that expression of TLR4 in lung cancer is associated with PD-L1 and could predict the outcome of patients with NSCLC receiving pulmonary resection for cancer."
sparser
"Therefore, it is hypothesized that the expression level of TLR4 is associated with PD-L1 in cancer cells."
TIMP1 affects NR3C2
| 5
TIMP1 binds NR3C2.
| 3
| 3
sparser
"We found that the N-terminal 22 000 Mr fragment is capable of binding to TIMP in a similar manner to the whole molecule resulting in the formation of a TIMP- 22 000 Mr fragment complex."
sparser
"The data additionally shows that the C-terminal 27000 Mr domain will not bind to TIMP on its own suggesting that the TIMP-binding ability of collagenase resides mainly or entirely in the N-terminal domain."
sparser
"Intact fibroblasts cultured in the presence of tunicamycin synthesized an Mr 20 000 form of tissue inhibitor of metalloproteinases, detectable intracellularly and extracellularly."
TIMP1 inhibits NR3C2.
| 2
TIMP1 inhibits NR3C2. 2 / 2
| 2
sparser
"In contrast to our own initial data they also reported inhibition of both whole molecule collagenase and 22 000 Mr fragment by TIMP at a 1:1 molar stoichiometry."
sparser
"Nagase et al. [8] have also described the inhibition of the 22 000 Mr fragment by TIMP; however they report that inhibition occurs at a 1:1 molar ratio of TIMP to 22000 Mr fragment and they do not mention any attenuation of inhibition compared to that of the whole molecule."
TIMP1 affects CD44
| 4 1
| 3 1
reach
"Previous studies have demonstrated that TIMP-1 binds a proMMP9 and CD44 complex that facilitates erythroid cell survival and is localized to the cell surface [XREF_BIBR]."
sparser
"Interestingly, CD44 also correlates with increased aggressiveness and resistance to radiation therapy and chemotherapeutics (reviewed in xref ) and TIMP-1 binding of the proMMP-9/CD44 complex has been shown to mediate cell survival through Akt activation xref ."
sparser
"Therefore, our results indicate that the anti-apoptotic signalling of TIMP-1 depends on the formation of a ternary complex between TIMP-1, proMMP-9 and CD44 at the UT-7 erythroid cell surface."
sparser
"Importantly, we uncover that TIMP1 suppresses osteoblast growth and differentiation by targeting the AKT pathway, and this is associated with TIMP1-mediated induction of PTEN via its binding to the cell surface receptor CD44."
TIMP1 binds CD44 and CD63. 1 / 1
| 1
sparser
"Other studies have also reported that TIMP-1 can bind to CD63 or the pro-MMP9/CD44 complex, thereby activating survival pathways in some cells [ xref , xref ]."
THBS1 affects ITGB1
1 4 |
THBS1 binds ITGB1.
1 2 |
1 2 |
omnipath
No evidence text available
omnipath
No evidence text available
hprd
No evidence text available
THBS1 activates ITGB1.
2 |
THBS1 activates ITGB1. 2 / 2
2 |
omnipath
No evidence text available
omnipath
No evidence text available
TGFBR1 affects PMEPA1
| 5
| 5
reach
"TMEPAI associates with TbetaRI to promote degradation of TbetaRI in the lysosome."
reach
"GST-TMEPAI interacted with TbetaRI, and bound weakly to Smad2, but not with other Smads or TbetaRII."
reach
"To verify the interaction between TMEPAI and TbetaRI, an immunoprecipitation experiment was performed."
reach
"These results indicate that TMEPAI associates with TbetaRI and promotes its lysosomal degradation.To provide evidence for TMEPAI in regulating tumor growth in vivo, A549 cells stably knocked down for TMEPAI or stably overexpressing TMEPAI were injected into BALB/c nude mice."
reach
"TMEPAI associates with the TGF-beta type I receptor (TbetaRI) and promotes its degradation in the lysosome."
TGFB1 affects NRP2
| 4 1
| 4 1
sparser
"Combined with the inhibition of membrane-bound TGF-β1 by NRP2 targeting siRNA ( xref ), these results supported the hypothesis of a direct binding activity of TGF-β1 by NRP2 leading to smad2/3 phosphorylation in colorectal cancer cells."
sparser
"To examine if NRP2 could directly bind active TGF-β1, we studied the binding of TGF-β1 to NRP2-Fc by Surface Plasmon Resonance (SPR)."
reach
"To examine if NRP2 could directly bind active TGF-beta1, we studied the binding of TGF-beta1 to NRP2-Fc by Surface Plasmon Resonance (SPR)."
sparser
"Together, these data suggest that NRP2 expression associates with less-differentiated high-grade tumors and TGF-β1 expression in HCC patients."
sparser
"Moreover, NRP2 expression was associated with an increase of TGF-β1 on HT29 cytoplasmic membrane, while treatment of Colo320 with NRP2-siRNA decreased membrane-bound TGF-β1 ( xref )."
TGFB1 affects LRP1
| 3 2
| 3 2
reach
"42 Moreover, LRP1 can bind TGF-beta1 and TGF-beta2 and thereby inhibit cell proliferation and regulate vascular remodeling, respectively."
reach
"Furthermore, LRP1 and TGFbetaR (V), can directly bind TGFbeta1 XREF_BIBR, as well as enter into a complex with TGFbetaR (I) XREF_BIBR."
sparser
"LRP1 is involved in different cellular processes, such as lipid homeostasis, signal transduction and endocytosis. xref , xref LRP1 also acts as a “protease sink” responsible for cellular uptake of ADAMTS-5 from the extracellular space. xref Moreover, LRP1 can bind TGF-β1 and 2 and thereby inhibit cell proliferation and regulate vascular remodelling, respectively. xref After AngII treatment, LRP1 was less abundant in aortas of Adamts5 Δcat mice."
sparser
"LRP1 is involved in different cellular processes, such as lipid homeostasis, signal transduction, and endocytosis. xref , xref LRP1 also acts as a protease sink responsible for cellular uptake of ADAMTS-5 from the extracellular space. xref Moreover, LRP1 can bind TGF-β1 and TGF-β2 and thereby inhibit cell proliferation and regulate vascular remodeling, respectively. xref After AngII treatment, LRP1 was less abundant in aortas of Adamts5 Δcat mice."
sparser
"The direct binding of both TGFβ1 and TGFβ2 to LRP1 was demonstrated by surface plasmon resonance experiments xref ."
TGFB1 affects CXCR4
1 | 4
1 | 4
sparser
"The major findings of this study are: (1) Platelet surface expression of TGF-β1 correlates with platelet surface expression of SDF-1 and its receptors CXCR4 and CXCR7 in patients with symptomatic coronary artery disease; (2) CXCR4 as well as CXCR7 are independently associated with TGF-β1 levels. (3) Platelet surface expression of TGF-β1 increases significantly after stimulation of platelets with recombinant SDF-1 in vitro ; (4) SDF-1 induced TGF-β1 degranulation is diminished by blocking of either CXCR4 or CXCR7; (5) however surface expression levels of SDF-1, CXCR4 and CXCR7 do not alter significantly in presence of recombinant TGF-β1."
sparser
"This suggested that high CXCR4, TGF-β1, and Ang2 expression levels might be associated with reduced sensitivity to these treatments."
sparser
"Conclusions: Our findings indicate that the oncogenic MSH6-CXCR4-TGFB1 feedback loop is a novel therapeutic target for GBM and that PTT is associated with the inhibition of the MSH6-CXCR4-TGFB1 loop."
sparser
"MSH6, CXCR4 and TGFB1 formed a triangular MSH6-CXCR4-TGFB1 feedback loop that accelerated gliomagenesis, proliferation (G1 phase), migration and invasion (epithelial-to-mesenchymal transition; EMT), stemness, angiogenesis and antiapoptotic effects by regulating the p-STAT3/Slug and p-Smad2/3/ZEB2 signaling pathways in GBM."
omnipath
No evidence text available
PTGER3 affects IL1B
| 5
| 5
sparser
"Increased levels of IL-1beta and PGE(2) were associated with body mass index >or=30 kg/m(2)."
sparser
"IL-6 did increase IL-1beta-induced PGE(2) formation in unstimulated cells but not in cells stimulated with arachidonic acid (AA; 10(-5) M), suggesting that IL-6 effects were mediated at the level of AA release."
sparser
"The close parallel between the kinetics of COX-2 expression and PGE synthesis indicated that IL-1β-induced PGE formation in TSMCs is mediated through the enhanced expression of COX-2."
sparser
"Clinically, high-gingival crevicular fluid levels of PGE-2, IL-1β, or IL-6 have been associated with their elevated levels in amniotic fluid.[ xref ] The inflammatory response appears to be the privileged pathway of the pathogenic periodontal disease influence on pregnancy, as suggested for other major systemic diseases, including cardiovascular diseases or diabetes.[ xref ]"
sparser
"Higher levels of GCF IL-1beta and PGE(2) were significantly associated with clinical signs of periodontal disease and independently related to patient-based anthropomorphic measures, behaviours and exposures in community-dwelling adults."
PRNP affects CANX
| 4 1
| 4 1
sparser
"We for the first time analyzed PrP-calnexin interaction."
sparser
"This possibility may be supported by the report that similarly to CypB, CNX interacts with PrP and reduces PrP-mediated toxicity (Wang et al., xref )."
reach
"The immunoprecipitation, confocal microscope and native polyacrylamide-gel electrophoresis results indicated that calnexin could bind PrP both in vitro and in vivo."
sparser
"The immunoprecipitation, confocal microscope and native polyacrylamide-gel electrophoresis results indicated that calnexin could bind PrP both in vitro and in vivo."
sparser
"Coimmunoprecipitation experiments showed that calnexin associates with YFP-PrP ∗ , but not as strongly with wild-type YFP-PrP, suggesting a misfolding-dependent interaction ( xref A and xref C)."
LRP6 affects LDLR
| 2 3
| 2 3
sparser
"LRP6 can form a complex with LDLR, facilitating receptor-mediated endocytosis of LDL particles [ xref , xref ], and also directly bind apolipoprotein E-containing lipoproteins."
reach
"LRP6 forms a complex with LDLR, clathrin, and autosomal recessive hypercholesterolemia protein, and is required for clathrin mediated vesicular LDL uptake."
sparser
"Here, we further show that Wnt ligand stimulation induces conformational change of the Frz-LRP6 complex and leads to hexamer formation containing the core LDLR domain-mediated LRP6 homodimer that is stabilized by two pairs of Wnt3a and Frz8, that is, Wnt3a-Frz8-LRP6-LRP6-Frz8-Wnt3a."
reach
"Furthermore, co-localization and complex formation between LRP6 and LDLR in LRP6 mutant fibroblast showed impaired internalization of LDL particles."
reach
"Once LDL-C binds to LDLR, LRP6 forms a complex with LDLR, LDLRAP1, and clathrin to initiate a clathrin dependent endocytosis."
LRP1 affects CANX
1 1 | 1 2
1 1 | 1 2
sparser
"It is not surprising that both calnexin and calreticulin associate with LRP because of their broad substrate specificity; the list of glycoproteins currently known to interact with calnexin and calreticulin is extensive, and no particular type of N-glycoprotein (soluble lysosomal, secreted, bound to internal or plasma membranes, etc.) is thought to be excluded [50] ."
biogrid
No evidence text available
reach
"A reverse co-immunoprecipitation assay was also performed to confirm the association between LRP and calnexin."
hprd
No evidence text available
reach
"It is not surprising that both calnexin and calreticulin associate with LRP because of their broad substrate specificity; the list of glycoproteins currently known to interact with calnexin and calreticulin is extensive, and no particular type of N-glycoprotein (soluble lysosomal, secreted, bound to internal or plasma membranes, etc.) is thought to be excluded [50]."
IL6ST affects IL10
| 3 2
| 3 2
sparser
"This interaction between IL6ST rs10471960 and IL10 rs3024493 SNPs was not detected in the Canadian population ( P =0.65) or when the populations were combined ( P =0.020)."
sparser
"In the epistasis study, a suggestive interaction between IL6ST rs10471960 and IL10 rs3024493 SNPs was observed in the population that originated in the northern Finland ( P =0.0003)."
reach
"87 However, Gu et al 82 evaluated the associations between IL-4, IL-6, and IL-10 and the IL receptor genes, IL-4R, IL-6R, and IL-10R, and CMM susceptibility; they reported that 4 SNPs in the IL-6R gene were associated with an increased risk of CMM, but none of the other genes exhibited any other associations."
reach
"To our knowledge, interactions between IL6ST and IL10 have not been reported previously."
sparser
"To our knowledge, interactions between IL6ST and IL10 have not been reported previously."
IL1B affects TRPC3
| 1 4
IL1B increases the amount of TRPC3.
| 4
IL1B increases the amount of TRPC3. 4 / 4
| 4
reach
"Interleukin-1beta specifically upregulated TRPC3 protein expression in myometrial cells without influencing TRPC3 mRNA and had no effect of TRPC4 mRNA or protein [XREF_BIBR]."
reach
"IL-1 beta did not alter TrpC1, 3, 4, 6, or 7 mRNA expression; but IL-1 beta exclusively up-regulated TrpC3 protein expression (P < or = 0.05)."
reach
"Specifically, IL1B modulates protein expression of TRPC3 (a putative calcium channel) and SR Ca 2+ -ATPases, initiates spontaneous [Ca 2+] i oscillations and augments calcium influx pathways and a store operated current [XREF_BIBR, XREF_BIBR]."
reach
"The induction of TRPC3 protein expression by IL1B may in part explain the increase in TRPC3 expression observed in uterine muscle at labour onset and provides a plausible mechanism by which cytokines could induce premature labour."
IL1B binds TRPC3.
| 1
TNF binds TRPC3 and IL1B. 1 / 1
| 1
sparser
"An increased TRPC3 expression was significantly associated with increased expression IL-1β or TNF-α."
IL1B affects ANTXR1
| 5
| 5
sparser
"IL-1α and IL-1β bind to the IL-1 receptor 1 (IL-1R1) [ xref , xref ]."
sparser
"IL-1α and IL-1β both bind to the IL-1 receptor 1 (IL-1RI), which is present on almost all cell types, including structural cells such as airway epithelial cells [ xref , xref ]."
sparser
"Both IL-1α and IL-1β bind to IL-1 receptor 1 (IL-1R1)."
sparser
"IL-1 signaling is activated when either of the agonistic IL-1 ligands i.e. IL-1α or IL-1β binds to the IL-1 receptor 1 (IL-1R1) which then forms a complex with the IL-1 receptor accessory protein (IL-1RAcP)."
sparser
"Both IL-1α and IL-1β interact with the IL-1 receptor 1 (IL-1R1) and recruit the IL-1 receptor accessory protein (IL-1R3, formerly IL-1RAcP) to induce a downstream signal via several inflammatory kinases, such as Myd88, ERK, JNK and NFκB, leading to transcription of inflammatory, catabolic genes [ xref - xref ]."
IL1A affects F3
| 5
IL1A increases the amount of F3. 5 / 5
| 5
reach
"Up-regulation of TF expression by human TNFalpha or IL-1alpha shortened PEC induced coagulation time, while siRNA mediated knockdown of TF expression prolonged coagulation time."
reach
"Such a potentialization between glucocorticoids and IL-1 alpha was not observed for another marker of endothelial activation, IL-1 alpha induced stimulation of coagulation tissue factor expression."
reach
"PCA and tissue factor level induced by IL-1alpha are lower in PDECs than in HSVECs."
reach
"For example, assembly of small amounts of terminal complement complexes on endothelial cells induces the production of IL-1alpha, which acts on endothelial cells in an autocrine manner to induce the expression of tissue factor, plasminogen activator inhibitor Type I, and various other inflammatory factors (Saadi et al., 1995, 2000)."
reach
"IL-1alpha enhanced the expression of IL-1alpha, IL-2, IL-6, and IL-8; nuclear factor of kappa light chain enhancer in B-cells (NFkappaB)-1, NFkappaB-2, and NFkappaB-inhibitor; cyclin dependent kinase inhibitor and monocyte chemotactic protein-1; and transiently increased tissue factor expression."
IL10 affects F3
| 5
F3 binds IL10. 5 / 5
| 5
sparser
"In the current study, we found that a deficiency of TF in myeloid cells was associated with enhanced IL-10 production, a reduction in the loss of ΔΨm, reduced apoptosis and increased M. tb growth in macrophages."
sparser
"However, the complex physiological changes that occur during pregnancy make it difficult to confirm whether TF expression is associated with IL-10 in vivo."
sparser
"For example, studies in mouse model systems have shown that deficiency of IL-10 is associated with tissue factor (TF) activities together with markers of systemic coagulation and vascular thrombosis xref ."
sparser
"0.1 and 10 U/ml IL-10 was associated with a concentration-dependent decrease in TF mRNA (Fig. 4)."
sparser
"TF IL-10 detection was not associated with hyaline membrane disease, antenatal steroids or influenced by TF sample volume."
C3 affects LRP1
1 4 |
C3 binds LRP1.
1 2 |
C3 binds LRP1. 3 / 3
1 2 |
hprd
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
C3 activates LRP1.
2 |
C3 activates LRP1. 2 / 2
2 |
omnipath
No evidence text available
omnipath
No evidence text available
AXL affects ADAM10
2 3 |
2 3 |
omnipath
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
hprd
No evidence text available
hprd
No evidence text available
ACP2 affects CD4
| 5
ACP2 activates CD4.
| 4
ACP2 activates CD4. 4 / 4
| 4
sparser
"This might be related to CD4 + LAP + Foxp3 + T and IL-17A + CD4 + T (Th17) cell activation, evidenced by flow cytometry of splenocytes."
sparser
"This might be related to CD4 + LAP + Foxp3 + T and IL-17A + CD4 + T (Th17) cell activation, evidenced by flow cytometry of splenocytes."
sparser
"This might be related to CD4 + LAP + Foxp3 + T and IL-17A + CD4 + T (Th17) cell activation, evidenced by flow cytometry of splenocytes."
sparser
"This might be related to CD4 + LAP + Foxp3 + T and IL-17A + CD4 + T (Th17) cell activation, evidenced by flow cytometry of splenocytes."
ACP2 binds CD4.
| 1
| 1
sparser
"Finally, we investigated the association of CD4 + Foxp3 + LAP + T cells with tumor stage."
VEGFA affects RET
| 2 2
VEGFA phosphorylates RET.
| 1 2
VEGFA phosphorylates RET. 3 / 3
| 1 2
reach
"Earlier studies have shown that VEGFA164 signaling interacts with that of GDNF, and that VEGFA can phosphorylate RET; moreover, GDNF is up-regulated by the addition of human VEGFA165, and KDR and RET are co-immunoprecipitated."
reach
"VEGF-A stimulates proliferation and branching of ureteric bud via phosphorylation of the Ret receptor and upregulation of its major ligand, glial derived neurotrophic factor (GDNF) [XREF_BIBR, XREF_BIBR]."
sparser
"Earlier studies have shown that VEGFA164 signaling interacts with that of GDNF, and that VEGFA can phosphorylate RET ( xref ); moreover, GDNF is up-regulated by the addition of human VEGFA165, and KDR and RET are co-immunoprecipitated."
VEGFA binds RET.
| 1
| 1
sparser
"These findings provide evidence for a novel cooperative interaction between VEGFR2 and RET that mediates VEGF-A functions in ureteric bud cells."
VEGFA affects PKD1
| 4
VEGFA activates PKD1.
| 3
VEGFA activates PKD1. 3 / 3
| 3
sparser
"PKD1 that is activated in endothelial cells by vesicular endothelial growth factor (VEGF) phosphorylates HDAC5 at Ser259/498 and induces cell proliferation and angiogenesis ( xref )."
sparser
"VEGF-A activated PKD1 by inducing its phosphorylation of Ser 744/748 in the activation loop, most likely by protein kinase Cα [ xref ] ( xref )."
sparser
"It appears, therefore, that integrin αvβ3 underwent constitutive Rab5 and Rab4-dependent recycling through early endosomes, and that the activation of PKD1 by VEGF-A inhibited the endocytosis of αvβ3 via an unknown mechanism."
VEGFA phosphorylates PKD1.
| 1
VEGFA phosphorylates PKD1. 1 / 1
| 1
sparser
"Although both Ang-1 and VEGF induced significant PKD1 phosphorylation, the relative rise in PKD1 phosphorylation in response to VEGF is relatively stronger (≈29-fold) compared with that elicited by Ang-1 (≈5-fold; online-only xref )."
TRPV4 affects TRPV2
| 2 2
| 2 2
reach
"However, we can not totally exclude the possibility that TRPV2 and TRPV4 form a heterodimer and translocate to the site receiving mechanical stress."
reach
"BBB permeability is increased by activation of TRPV4 and TRPV2 complex."
sparser
"However, we cannot totally exclude the possibility that TRPV2 and TRPV4 form a heterodimer and translocate to the site receiving mechanical stress."
sparser
"Although there are no reports of direct Cav3 interactions with TRPV2 or TRPV4, both channels are expressed in myotubes and myofibers and have been linked to MSC activity and elevated Ca 2+ in normal and mdx myofibers xref – xref ."
TNF affects IFNGR1
3 | 1
TNF increases the amount of IFNGR1.
3 |
Transcriptionally active TNF increases the amount of IFNGR1. 3 / 3
3 |
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
TNF binds IFNGR1.
| 1
| 1
reach
"Candidate gene studies indicated associations between polymorphic alleles of SLC11A1 (formerly called NRAMP1), IL4, IFNGR1, and TNFA (encoding TNF-alpha) and development of visceral leishmaniasis, asymptomatic infection, or PKDL [XREF_BIBR - XREF_BIBR]."
THBS1 affects CD44
| 3 1
| 3 1
sparser
"TSP-1 interacts with CD44 ligands or HA binding proteins to influence CD44 expression [ xref ]."
sparser
"These studies indicate a clear connection between the two molecules, and since both CD44 and TSP-1 bind multiple ligands there is a distinct possibility that one or more of these ligands could bridge TSP-1 with CD44, thus, facilitating the DBP binding site complex."
reach
"However, there are indirect associations between CD44 and TSP-1 that may be relevant to understanding how TSP-1 assists DBP in enhancing chemotaxis to C5a."
sparser
"We believe that TSP-1 bridges cell surface receptors and facilitates (i.e., accelerates) formation of the DBP binding site complex, but there is no evidence that TSP-1 directly interacts with either CD44 or annexin A2, two molecules that we have previously shown are part of the DBP binding site ( xref )."
TGFB1 affects ITGB1
1 1 | 1 1
TGFB1 binds ITGB1.
1 | 1
| 1
reach
"This distribution change may allow outside-in signaling, because the integrin-beta1A+ D extracellular domains may allow interactions between (myo) fibroblasts and/or myocytes and the ECM to " sense " the mechanical wall stress of RV hypertension, septal shift, altered geometry, and increased fibrillar collagen, to trigger RV and septal HP biochemical signaling and ECM remodeling.26, 27 We previously identified the TGF-beta1 pathway as a central mediator of fibrosis in RV pressure load.13 TGF-beta1 binds integrin-beta1, which reciprocally activates latent TGF-beta1 and its profibrotic signaling.28, 29, 30 Consistent with our invitro results, integrin-beta1 inhibition in fibroblasts blocks TGF-beta1 activation and prevents fibrosis.31, 32 Activated TGF-beta1 induces collagen type I production through signaling cascades (eg, Smad2/3), which are active in our models.33, 34, 35, 36 This was supported by our invitro experiments that showed that blocking integrins decreased contractile activity of stretched fibroblasts."
1 |
omnipath
No evidence text available
TGFB1 phosphorylates ITGB1.
| 1
TGFB1 phosphorylates ITGB1 on T788. 1 / 1
| 1
rlimsp
"Transforming growth factor (TGF)-beta1 specifically phosphorylates beta1 integrin (threonine 788-789) via Smad-2 and Smad-3, causing a conformational change of the extracellular component with an inside-out mechanism."
TGFB1 increases the amount of ITGB1.
1 |
Transcriptionally active TGFB1 increases the amount of ITGB1. 1 / 1
1 |
biopax:ctd
No evidence text available
TGFB1 affects BMPR2
| 2 2
TGFB1 binds BMPR2.
| 1 2
| 1 2
reach
"For rectal cancer BMP1interacted with NFkappaB1, Smad7, and TGFbeta1; BMP2 interacted statistically significantly with TGFbeta1; BMPR1B interacted with Smad7 and TGFbetaR1; BMPR2 interacted with NFkappaB1 and TGFbeta1; and GDF10 interacted with NFkappaB1, Smad2, and TGFbeta1 (XREF_TABLE)."
reach
"For colon cancer BMP2 interacted with NFkappaB1, Smad3, TGFbeta1, Smad2 and Smad7; BMP4 interacted statistically with NFkappaB1 and Smad3, BMPR1B with NFkappaB1, Smad2, Smad7, Smad3, Smad4, and TGFbeta1; BMPR1A with Smad7 and TGFbeta1, and BMPR2 interacted significantly with Smad3, Smad7, and TGFbeta1."
sparser
"For rectal cancer BMP1interacted with NFκB1 , Smad7 , and TGFβ1; BMP2 interacted statistically significantly with TGFβ1; BMPR1B interacted with Smad7 and TGFβR1; BMPR2 interacted with NFκB1 and TGFβ1 ; and GDF10 interacted with NFκB1 , Smad2 , and TGFβ1 ( xref )."
TGFB1 phosphorylates BMPR2.
| 1
TGFB1 phosphorylates BMPR2. 1 / 1
| 1
sparser
"Expression cloning of the TGF-p type II receptor, a functional transmembrane serine/threonine kinase."
TGFB1 affects AGTR1
| 3 1
| 3 1
sparser
"These findings support our results that showed that decreased opn gene expression was associated with decreased TGF-β1 and AT1 receptor expression after rhEC-SOD administration in the kidneys of diabetic rats ( Figs."
sparser
"Therefore, this study aimed to assess whether ARBs attenuate proliferation and fibrosis in our established fibrotic tumor model, and also to clarify the mechanisms of Angiotensin II–AT1 receptor–TGF-β1 molecular interactions in gastric cancer."
reach
"Interaction between AT1 and TGFbeta1 is a novel observation in trophoblast and suggests new avenues for the study of placentation."
sparser
"Interaction between AT1 and TGFbeta1 is a novel observation in trophoblast and suggests new avenues for the study of placentation."
SPP1 affects F3
| 4
SPP1 binds F3. 4 / 4
| 4
sparser
"OPN and TF are positively associated with malignancy, especially vascular thrombosis."
sparser
"LXR ligands also exhibit a similar repression of tissue factor (TF) and osteopontin, both of which are associated with the development of atherosclerosis."
sparser
"Expression of OPN and TF were also significantly associated with both OS and TRR."
sparser
"The elevated levels of OPN and TF were associated with signal activation of nuclear factor κB (NFκB) and extracellular signal-regulated kinases (ERK)."
SORL1 affects LDLR
| 2 2
| 2 2
sparser
"Thus, we hereby investigated the binding of LDLR domain of Ldlr to Vg."
reach
"Ligand blotting of LR11 transfected cells demonstrated that LR11 binds apolipoproteinE containing lipoproteins, as well as other members of LDL receptor gene family."
reach
"Sortilin, SorLA and HAB bind the LDL receptor associated protein RAP [4,11,12]."
sparser
"Association of apolipoprotein A-V with the low density lipoprotein receptor-related protein or SorLA resulted in enhanced binding of human chylomicrons to receptor-covered sensor chips."
SIRPA affects PRLR
| 4
| 4
sparser
"Our findings have shown that PRLr, β 1 integrin, and SIRPα interact in both estrogen receptor–positive (ER + ) and ER − breast cancer cell lines, whereas SIRPα expression/function is associated with an ECM context-dependent modulation of PRLr signaling."
sparser
"The interaction between the PRLr and SIRPα in MDA-MB-231 was comparable with that seen in the T47D cells ( xref )."
sparser
"To that end, the interaction of SIRPα with the PRLr, β 1 integrin, and Jak2 was tested ( xref and xref )."
sparser
"SIRPα interacts with the PRLr, β 1 integrin, and Jak2 in breast cancer cells."
PLAUR affects LDLR
| 1 2 1
| 1 2 1
sparser
"LR11 colocalizes with uPAR on the cell surface and inhibits the LDL receptor-related protein (LRP)-mediated binding and internalization of uPAR."
reach
"We used hepatic overexpression of soluble full-length murine uPAR in Western-diet fed LDLR -/- mice acting as a decoy receptor for uPAR ligands and competing endogenous membrane bound uPAR."
sparser
"We noted that maspin (a) colocalized with uPA and uPA receptor (uPAR), (b) enhanced the interaction between uPAR and low-density lipoprotein receptor related protein, and (c) induced rapid internalization of uPA and uPAR."
trips
"Direct binding of occupied urokinase receptor (uPAR) to LDL receptor-related protein is required for endocytosis of uPAR and regulation of cell surface urokinase activity."
NAMPT affects NOTCH1
| 1 3
NAMPT increases the amount of NOTCH1.
| 3
NAMPT increases the amount of NOTCH1. 3 / 3
| 3
reach
"At present, we do not know whether NF-kappaB p65 directly or indirectly mediates the induction of Notch1 expression by visfatin."
reach
"Here, we provide evidence for the regulation of Notch1 gene expression by visfatin and describe the role of the visfatin-Notch1 axis in breast cancer cells."
reach
"Considering that Notch1 acts as an oncogene and as a tumor suppressor in human cancer, it will be interesting to investigate whether visfatin also promotes Notch1 expression in other types of cancer, including skin cancer, hepatocellular carcinoma, and head and neck squamous cell carcinoma, in which Notch1 functions as a tumor suppressor."
NAMPT binds NOTCH1.
| 1
| 1
sparser
"However, little information on visfatin-Notch1 interactions in cancer is available."
M6PR affects CTSD
| 4
| 3
sparser
"In the latter study, the authors demonstrated an interaction between M6PR and pCathD."
sparser
"Cathepsin D binds to the monocyte/macrophage mannose-6-phosphate receptor [44,45,69], which determines the sorting of cathepsin D between intracellular and plasma membrane components."
sparser
"Both treatments resulted in suppression of cellular proliferation and the induction of a cell death with no detectable caspase-3 activation or DNA fragmentation, however, it was associated with increased accumulation of cathepsin D, cellular vaculolization, expression of the mannose-6-phosphate receptor, and the autophagy marker LC3-II, all of which are believed to be associated with autophagy."
SORT1 binds CTSD and M6PR. 1 / 1
| 1
sparser
"Cathepsin H has previously been demonstrated to interact with sortilin, while cathepsin D interacts with both sortilin and the M6PR."
LGALS3BP affects ITGB1
1 1 2 |
1 1 2 |
omnipath
No evidence text available
omnipath
No evidence text available
biogrid
No evidence text available
hprd
No evidence text available
LDLR affects FZD1
| 3 1
| 3 1
sparser
"These Authors proposed that, upon release from the dense granules of cardiomyocytes, pro-ANP binds to Fz1 and LDLR repeats 1-4, is cleaved by the catalytic domain and releases the mature and biologically active ANP (Fig. xref )."
sparser
"The low density lipoprotein receptor-1, LRP1, interacts with the human frizzled-1 (HFz1) and down-regulates the canonical Wnt signaling pathway."
reach
"Binding of Wnt3a to Frizzled-1 (Fz1) and low-density lipoprotein receptor related protein 5/6 (LRP5/6) facilitates the phosphorylation of LRP5/6, and triggers the interaction of Fz and LRP5/6 complex with dynamic multiprotein complexes."
sparser
"The amino terminal domain of DKK1 plays an inhibitory role on Wnt signalling by binding to the low-density lipoprotein receptor-related protein (LRP5/LRP6) component of the Wnt receptor complex [ xref ]."
ITGB1 affects CANX
1 3 |
1 3 |
hprd
No evidence text available
biogrid
No evidence text available
hprd
No evidence text available
hprd
No evidence text available
IL1B affects TRPV4
4 |
Transcriptionally active IL1B increases the amount of TRPV4. 4 / 4
4 |
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
IL1B affects PDGFRA
| 2 2
IL1B phosphorylates PDGFRA.
| 2
IL1B phosphorylates PDGFRA. 2 / 2
| 2
sparser
"IL-1beta-stimulated c-Src, PDGFR, and Akt phosphorylation and proMMP-9 expression were attenuated by the inhibitors of c-Src (PP1), PDGFR (AG1296), and PI3K (LY294002), respectively, or transfection with dominant negative plasmid of c-Src or short hairpin RNAs of PDGFR and Akt."
sparser
"Src, PDGFR, and PI3K/Akt mediated the effects of IL-1beta because pretreatment with PP1, AG1296, and wortmannin also abrogated IL-1beta-stimulated Src, PDGFR, and Akt phosphorylation, respectively."
IL1B increases the amount of PDGFRA.
| 2
IL1B increases the amount of PDGFRA. 2 / 2
| 2
reach
"Collectively, these findings support the notion that C/EBPdelta mediated increase in PDGFR-alpha expression by IL-1beta is involved in smooth muscle cell hyperplasia by partial deletion of XBP1."
reach
"Active CREB prevents activation of PDGFRalpha promoter-luciferase reporter activity by CCAAT and enhancer binding protein-delta (C/EBPdelta), shown to mediate IL-1beta stimulation of PDGFRalpha expression."
IL1B affects HRH1
| 4
IL1B binds HRH1.
| 2
| 2
sparser
"The same signalling pathway is involved in the interactions between histamine, interleukin-1beta, and interleukin-6, where NGF secretion is amplified."
sparser
"In this review, the biochemical mechanisms of histamine-stimulated NGF synthesis and secretion, and interactions between histamine, interleukin-1beta, and interleukin-6 are discussed."
IL1B activates HRH1.
| 2
IL1B activates HRH1. 2 / 2
| 2
sparser
"Moreover, an experimental study of central administration of interleukin-1β in rats demonstrated that interleukin-1β may stimulate synthesis and release of hypothalamic histamine at presynaptic terminals by activation of histidine decarboxylase (a histamine-synthesizing enzyme) and thus facilitate the degradation of extracellular histamine by the activation of histamine-N-methyltransferase (a degrading enzyme). xref These results indicate that interleukin-1β activates neural histamine turnover in the hypothalamus."
sparser
"Moreover, interleukin-1beta may activate the turnover of hypothalamic neural histamine."
IL1B affects CNR1
| 4
IL1B increases the amount of CNR1. 4 / 4
| 4
reach
"Next, we examined a possibility that the male specific upregulation of CB1 expression by IL-1beta can be mediated by the differential expression of AR in TG between the two sexes."
reach
"Interleukin-1 beta (IL-1beta), a proinflammatory cytokine, upregulated CB1 mRNA expression in TG of male rats."
reach
"In this study, however, we demonstrated that the IL-1beta induction of CB1 expression was prevented only in the presence of flutamide, but not ICI 182,780."
reach
"In this study, we confirmed that IL-1beta application reliably and significantly increases CB1 expression in TG primary cultures prepared from intact male rats (XREF_FIG)."
IL1B affects ABCA1
4 |
Transcriptionally active IL1B decreases the amount of ABCA1. 4 / 4
4 |
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
IGF2R affects CTSD
1 | 2 1
1 | 2 1
hprd
No evidence text available
reach
"As shown in XREF_SUPPLEMENTARY, 86% of the Ctsk activity and 16% of the Ctsd activity from WT lysates bound the CI-MPR column."
sparser
"Newly synthesized CTSD binds CI-M6PR in the TGN and is subsequently translocated into endosomes (Figure xref )."
sparser
"Interestingly, when analyzing the cathepsins' interaction with the CI-MPR, the authors observed that, unlike cathepsin H, which bound exclusively to sortilin, cathepsin D was also able to bind to the CI-MPR."
ENO1 affects CD47
| 2 2
| 2 2
sparser
"The interaction between CD47 and ENO1 was verified by co-immunoprecipitation (co-IP)."
sparser
"Our mechanistic investigations demonstrated that CD47 interacted with ENO1 and protected it from ubiquitin-mediated degradation, subsequently promoting glycolytic activity and phosphorylation of ERK in CRC cells."
reach
"Our mechanistic investigations demonstrated that CD47 interacted with ENO1 and protected it from ubiquitin mediated degradation, subsequently promoting glycolytic activity and phosphorylation of ERK in CRC cells."
reach
"The interaction between CD47 and ENO1 was verified by co-immunoprecipitation (co-IP)."
CD274 affects AXL
| 3 1
| 3 1
sparser
"PD-L1 expression is associated with Axl and PI3 kinase signaling."
sparser
"Thus in three separate HPV-negative HNSCC cohorts, Axl-PI3 kinase signaling was associated with PD-L1 expression."
sparser
"Validating these associations clinically, we show that PD-L1 expression in resected tumors is associated with Axl and PI3K/Akt expression in HPV-negative HNSCC tumors, and is associated with loco-regional recurrence following radiotherapy in multiple patient cohorts, across multiple evaluation platforms."
reach
"These findings confirmed the clinical association between PD-L1, Axl, and the PI3K pathway."
ATP6AP2 affects ATP6AP1
3 | 1
3 | 1
biogrid
No evidence text available
biogrid
No evidence text available
biogrid
No evidence text available
sparser
"Messenger RNA (mRNA) expression of ATP6AP1- and ATP6AP2 -mutant forms was detected in all ATP6AP1- and ATP6AP2- mutant GCTs analyzed by RNA sequencing and/or complementary DNA (cDNA) sequencing, respectively (Supplementary Figs.  xref , d)."
VEGFA affects PTPRZ1
3 |
3 |
biogrid
No evidence text available
biogrid
No evidence text available
biogrid
No evidence text available
VEGFA affects CXCR4
| 2 1
| 2 1
sparser
"The expression of CXCR4 in BC cells was associated with increased expression of VEGF-A (Figure xref ), vimentin and p-GSK-3β and decreased expression of E cadherin (Figure xref )."
sparser
"We demonstrate here that the expression of CXCR4 in BC cells is associated with increased expression of VEGF-A. Increased expression of VEGF and its receptors correlates with increased MVD, cell proliferation, and tumor growth rate, which impairs patient survival in diverse cancers [ xref , xref , xref ]."
reach
"Specifically, VEGFA, CXCR4, GLUT1, HK2, and PFKFB3 were all associated with gained enhancers."
VEGFA affects CD47
| 2 1
THBS1 binds VEGFA and CD47. 2 / 2
| 2
sparser
"The increase in capillarity may be associated by changes in the interaction between VEGF-A, TSP-1, and CD47."
sparser
"Additional studies are required to investigate the signaling mechanism of (−)-epicatechin on the VEGF-A-TSP-1-CD47 interaction as well as determine the prolonged effects upon cessation."
| 1
reach
"The increase in capillarity may be associated by changes in the interaction between VEGF-A, TSP-1, and CD47."
VCAN affects ITGB1
1 2 |
1 2 |
hprd
No evidence text available
omnipath
No evidence text available
omnipath
No evidence text available
TYRO3 affects GRN
| 3
| 3
sparser
"In contrast to the binding of Gas6 to Tyro3 (Fig.  xref ), PGRN did not bind to Tyro3 by itself (Fig.  xref ), nor did BDNF interact with Tyro3 (Fig.  xref )."
sparser
"Surface Plasmon Resonance (SPR) analysis confirmed that PGRN inhibited binding of Gas6 to Tyro3 in a concentration-dependent manner (Fig.  xref , left panel)."
sparser
"The top candidate was Tyro3, and our investigations of this factor revealed that PGRN inhibited binding of Gas6 to Tyro3 (Figs.  xref and xref )."
TNFRSF1A affects ADAM17
1 | 1 1
1 | 1
reach
"The TNF-alpha-converting enzyme TACE can cleave membrane bound TNFR1 and TNFR2 to yield soluble TNF receptors, which have higher affinity for TNF-alpha."
biogrid
No evidence text available
| 1
sparser
"In the present study, we showed that development of cardiac hypertrophy was closely associated with the up-regulation of myocardial TNFR1, ADAM-17 and TNF-α, indicating an important role of TNF–α signal system in cardiac hypertrophy."
TNF affects LRP1
| 3
| 3
sparser
"Moreover, Scuderi et al. [ xref ] and Andrade et al. [ xref ] showed that TNFα and IFNα may be associated with persistent LRP."
sparser
"Among these factors, only LRP, P-gp and TNF-α were associated with response to platinum-based chemotherapy."
sparser
"TNFα and IL1β are associated with the initiation of the APR after influenza infection, acting in the brain regions responsible for regulation of temperature, sleep, food intake and sickness behavior ( xref ; xref )."
TNF affects KCNN1
| 3
TNF activates KCNN1. 3 / 3
| 3
sparser
"TNFα activated Sk1 and induced its translocation to the smooth muscle cell membrane."
sparser
"As shown in Figure 2 , TNFα activates SK-1 in a biphasic pattern with significant increases observed at 10 minutes and 4 to 6 hours after TNFα treatment."
sparser
"First, TNFα-induced activation of SK-1 in ECs was confirmed using an enzymatic assay."
TNF affects CNR1
3 |
Transcriptionally active TNF increases the amount of CNR1. 3 / 3
3 |
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
TNF affects AXL
| 1 2
TNF increases the amount of AXL.
| 2
TNF increases the amount of AXL. 2 / 2
| 2
reach
"TNF and IFN-alpha also elevated Axl expression (XREF_FIG)."
reach
"Since it had been reported that Axl regulates TNFalpha transcription through induction of TWIST, we analyzed TWIST expression but found no difference in the amount of TWIST RNA between naive and EAE induced Axl-/- and WT mice (data not shown)."
TNF binds AXL.
| 1
TNF binds AXL. 1 / 1
| 1
sparser
"Increased formation of AXL-NTF triggers subsequent intracellular cleavage."
TLR4 affects CD68
| 2 1
| 1 1
sparser
"We should further explore the association of TLR4 with CD68 and CD163 TAMs, MyD88, and nuclear factor κB, respectively, to clarify the specific mechanism of the complexity about TLR4 signal and TAMs."
reach
"The correlation between protein expression levels and clinical parameters, as well as the association between CD68 and TLR4 were analyzed."
TLR4 binds CD4 and CD68. 1 / 1
| 1
sparser
"High-resolution fluorescence microscopy showed MHCII expressing macrophages and interaction with neighboring CD68, CD4, and TLR4 positive cells."
TIMP1 affects PTGER3
| 3
| 3
sparser
"Inhibition of PGE 2 production by both EPA and DHA has been reported; however, formation of PGE 3 by EPA with human lung cancer cells has not been clearly demonstrated previously due to the lack of an adequate analytical method."
sparser
"Concomitant with the reduction of PGE 2 , incubation with EPA (100 μM) significantly increased PGE 3 formation from 0.43±0.15 ng/5 million cells in control cells to 5.12±1.05 ng/5 million cells in treated cells ( p <0.001) ( Fig. 8 )."
sparser
"These data suggest again that the lack of antiproliferative activity of EPA in H1299 cells may be associated with the relative lack of formation of PGE 3 due to a lower level of COX-2 expression."
THBS1 affects SDC4
| 1 2
| 1 2
reach
"There are indications that binding of TSP-1 to syndecan-4 proteoglycan mediates tubulogenesis and their protection from apoptosis [XREF_BIBR]."
sparser
"There are indications that binding of TSP-1 to syndecan-4 proteoglycan mediates tubulogenesis and their protection from apoptosis [ xref ]."
reach
"However, by binding to syndecan-4, TSP-1 can also exert pro angiogenic effects, protecting ECs from apoptosis and stimulating tubulogenesis [XREF_BIBR]."
THBS1 affects CD4
| 1 2
| 1 2
reach
"Given the lack of empirical data and the complexity of the signaling processes, we set out here to interrogate potential mechanisms for the inhibition of VEGF and VEGFR2 signaling to ERK1/2 and calcium by TSP1 and CD4 interaction utilizing a detailed rule based model of VEGF signaling to ERK1/2 and calcium incorporating VEGFR2, the co-receptor NRP1, and the detailed dynamics of the receptors."
reach
"Additionally, TSP-1 binds CD4 to block HIV entry into target cells."
sparser
"Additionally, TSP-1 binds CD4 to block HIV entry into target cells ( xref )."
TGFB1 affects PKD1
| 2 1
| 2 1
reach
"However, the precise interactions between polycystin 1, IL-8, and TGF-beta1 remain largely unexplored."
sparser
"Therefore, we hypothesized that IL-8 and TGF-β1 may be closely associated with polycystin 1 and may be required for the contribution of Tg737 to hypoxia-induced invasion and migration in HCC cells."
sparser
"However, the precise interactions between polycystin 1, IL-8, and TGF-β1 remain largely unexplored."
TGFB1 affects PDGFRB
3 |
Transcriptionally active TGFB1 increases the amount of PDGFRB. 3 / 3
3 |
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
TGFB1 affects NOTCH1
| 2 1
| 2 1
sparser
"Moreover, we demonstrated a physical interaction between Smad3 and NICD that was enhanced in the presence of TGF-β1."
reach
"Next, to confirm the association between TGF-beta1 and NOTCH1, we stimulated WM35, A375 and A2058 cells with rhTGF-beta1 (5 ng/ml) for 48 h."
sparser
"Pretreatment of SMCs with DAPT or expression of a soluble Jagged1 protein (inhibiting Notch signal) blocked TGF-β1-induced NICD binding activity to the primer 6 sequence ( xref )."
SPP1 affects OSMR
| 3
| 3
sparser
"Indeed increased expression of tartrate-resistant acid phosphatase (Acp5), bone sialoprotein (spp1), osteopontin and oncostatin M receptor was associated with chronic MHV induced CNS disease ( xref )."
sparser
"g003 osteopontin and oncostatin M receptor was associated with chronic MHV induced CNS disease TREM2/DAP12 mRNA expression."
sparser
"Indeed increased expression of tartrate-resistant acid phosphatase (Acp5), bone sialoprotein (spp1), osteopontin and oncostatin M receptor was associated with chronic MHV induced CNS disease (Table S4 )."
SORT1 affects CTSD
| 1 2
| 2
reach
"In mammals, cathepsin D (aspartyl protease), prosaposin C and acid sphingomyelinase can also interact with their receptor sortilin via stretches of amino acids."
reach
"Cathepsin H has previously been demonstrated to interact with sortilin, while cathepsin D interacts with both sortilin and the M6PR."
SORT1 binds CTSD and M6PR. 1 / 1
| 1
sparser
"Cathepsin H has previously been demonstrated to interact with sortilin, while cathepsin D interacts with both sortilin and the M6PR."
PLAUR affects ENO1
| 2 1
| 2 1
sparser
"To directly examine the ability of these molecules to interact, we performed a cell-free dot blotting assay and found that ENO1, uPA, and uPAR interact with each other, while plasminogen only interacts with ENO1 ( xref )."
sparser
"ENO1 was able to interact with uPA, and uPAR; resulting in augmentation of cell migration and invasion."
reach
"In this study, we demonstrated that surface ENO1 interacted with plasminogen, uPA and uPAR on the PE089 and LLC and luc lung cancer cell lines."
NR3C2 affects MME
| 3
| 3
sparser
"The antibody bound three polypeptides with Mr = 180,000, 56,000 and 32,000 in hydroxylapatite fraction of 10S DNA polymerase alpha by immunoblot."
sparser
"Sodium dodecyl sulfate-polyacrylamide gel electrophoresis in the presence and absence of 2-mercaptoethanol indicated that in Peak II, catalytically active Mr 29,500 protein is associated with the other two polypeptides by disulfide bonds."
sparser
"Furthermore, these polypeptides typically may interact with low Mr compounds as Heme, vitamins, metal ions, etc."
NR3C2 affects IL10
| 3
| 3
sparser
"IL10 gene variants rs1800896 and rs3024498, which were associated with incident MCR, have not, to our knowledge, been reported to predict incident MCI."
sparser
"The association of IL10 SNPs, rs1800896 (HR = 1.673; 95%CI= 1.200–2.331; p value=0.002) and rs3024498 (HR =1.896; 95%CI= 1.290–2.786; p value=0.001) with incident MCR in the full model was significant even when adjusted for OPUS/OPEL status to account for the LonGenity study design."
sparser
"The association of the IL10 polymorphisms rs1800896 (HR= 1.758; 95%CI= 1.208–2.560; p value=0.003) and rs3024498 (HR= 1.984; 95%CI= 1.305–3.017; p value=0.001) with incident MCR still remains significant even after removing these 15 MCI cases."
MME affects FGFR1
| 3
| 3
sparser
"Finally, Smith et al. used phage display techniques to generate Avimer Tm polypeptides that can simultaneously bind with high affinity FGFR1c and KLB, thus maintaining selectivity for the FGF21 receptor complex xref ."
sparser
"A-domain library is screened for Avimer™ polypeptides that bind FGFR1 or β-Klotho ( xref )."
sparser
"Both polypeptides interact with FGFR1 with similar affinity [37,38] ."
LYVE1 affects BSG
| 3
| 3
reach
"Notably, CD147 (also known as emmprin or basigin) is shown to control HA synthesis and interact with the HA receptors CD44 and LYVE-1."
reach
"These results support interactions between emmprin, LYVE-1 and BCRP on the surface of chemoresistant PEL cells."
reach
"In summary, this study provides the first description of cooperative interactions between emmprin, LYVE-1 and BCRP in regulating chemotherapeutic resistance, specifically for PEL."
LDLR affects ABCA1
| 3
| 3
sparser
"These changes were associated with decreased hepatic expression of SR-B1, ABCA1, and LDL receptor, proteins involved in modulating the lipid content of HDL."
sparser
"The interactions of ABCA-1 (SBP and PP), LDL-R (DBP), LIPC (SBP and DBP), and SCARB1 (PP) and overweight/obesity on blood pressure levels were also detected."
sparser
"We have found no interaction between epsins and ABCA1, LDLR, or CD36."
KIT affects CD63
2 | 1
2 | 1
biogrid
No evidence text available
sparser
"Rather, the kinetics of SCF binding to c-Kit were altered when c-Kit associated with CD63."
biogrid
No evidence text available
ITGAM affects F3
| 3
ITGAM binds F3.
| 2
| 2
reach
"The physiologic agonists collagen and ADP increased monocyte-platelet and neutrophil-platelet aggregates and increased leukocyte surface Mac-1 and CD11b and surface bound tissue factor, FXa and fibrinogen."
reach
"Geometric mean fluorescence and per cent positive data were collected for each subpopulation to measure the binding of test antibodies directed at CD42a, tissue factor, coagulation FXa, bound fibrinogen, activated Mac-1, and CD11b."
ITGAM increases the amount of F3.
| 1
ITGAM increases the amount of F3. 1 / 1
| 1
reach
"TF was expressed by CD11b + / F4/80 + macrophages specifically in the inflammation prone VAD and at higher levels in CD11b + / CD11c + versus CD11b + / CD11c - adipose tissue macrophages (XREF_FIG)."
ITGAM affects CD44
| 1 2
ITGAM increases the amount of CD44.
| 2
ITGAM increases the amount of CD44. 2 / 2
| 2
reach
"We found that CD44 in 4-month-old mice was highly expressed by all CD11b + CD45 high but not CD11b + CD45 low CNS MPs in WT and 5xFAD mice, suggesting that CD11b + CD45 high CNS MPs may be of peripheral origin but it still remains possible that CD44 expression is upregulated by microglia with aging and in inflammatory states."
reach
"We also found that CD44, recently suggested as a marker of peripherally derived CNS infiltrating immune cells in mice, was highly expressed by CD11b + CD45 high CNS MPs but not by CD45 low CNS MPs in both WT and 5xFAD mice."
ITGAM binds CD44.
| 1
| 1
sparser
"Fig. 6 E shows that CD44 expression is closely associated with CD11b expression in leukemia cells treated with cyclopamine (correlation coefficient r = 0.76)."
IL6ST affects IL15
| 3
| 3
sparser
"As indicated in the left panel of xref B, IL-15-gp130 was not detected after coimmunoprecipitation from lysates of single-transfected cells, indicating that IL-15-gp130 did not unspecifically interacted with anti-GFP-antibodies or protein G agarose."
sparser
"However IL-15-gp130 was coimmunoprecipitated with IL-15-gp130-EYFP as indicated on the right panel of xref B. We conclude that IL-15-gp130 can form homodimers on the cell surface that induce gp130-dependent but cytokine-independent signaling."
sparser
"To demonstrate the physical interaction of two IL-15-gp130 proteins, we performed coimmunoprecipitation experiments using lysates containing IL-15-gp130 and IL-15-gp130-EYFP."
IL1B affects ITGB8
| 3
IL1B increases the amount of ITGB8. 3 / 3
| 3
reach
"Here we report the mechanism of increased ITGB8 expression by IL-1beta."
reach
"IL-1beta activates Itgb8 expression by chromatin remodeling and exposure of binding sites for additional transcription factors, and the expression of Itgb8 in different cell types corresponds with the chromatin state of the Itgb8 core promoter."
reach
"We have previously shown that the proinflammatory cytokine interleukin-1beta (IL-1beta) increases ITGB8 expression on lung fibroblasts, which increases alphavbeta8 mediated TGF-beta activation in fibrosis and pathologic inflammation."
IL1B affects IFNGR1
3 |
Transcriptionally active IL1B increases the amount of IFNGR1. 3 / 3
3 |
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
IL15 affects AXL
| 2 1
IL15 binds AXL.
| 1 1
| 1 1
reach
"IL-15 also interacts with the tyrosine kinase receptor AXL to prevent apoptosis in fibroblasts XREF_BIBR."
sparser
"IL-15 also interacts with the tyrosine kinase receptor AXL to prevent apoptosis in fibroblasts xref ."
IL15 phosphorylates AXL.
| 1
IL15 phosphorylates AXL. 1 / 1
| 1
sparser
"Treatment with IL-15 induced tyrosine phosphorylation of both Axl and IL-15Rα , and activation of the phosphatidylinositol-3 kinase (PI-3K)-Akt pathway, indicative of the functional nature of this heterologous receptor pairing."
IL10 affects PTGER3
| 3
IL10 binds PTGER3.
| 2
| 2
sparser
"Three regulatory factors associated with mucosal tissues, PGE(2), IL-10, and TGFbeta, inhibited the ability of spleen pDCs to produce type I IFN in a dose-dependent fashion."
sparser
"Since formation of lipid bodies (LB) and PGE(2) production have been associated with IL-10 induction, the effect of PGE(2), the formation of LB, and the role of PPAR-γ were assessed."
IL10 inhibits PTGER3.
| 1
IL10 inhibits PTGER3. 1 / 1
| 1
sparser
"At variance with TGF-1, IL-10 inhibited both LPS-induced PGE and NO synthesis, the effect being more pronounced in the case of PGE release ( )."
IL10 affects CD44
| 3
| 3
sparser
"A phosphorylation-dependent interaction between the amino-terminal portion of Eta-1 and its integrin receptor stimulated IL-12 expression, whereas a phosphorylation-independent interaction with CD44 inhibited IL-10 expression."
sparser
"Alone, IL-10 induced HA binding to PBMC monocyte CD44, while in contrast, IL-10 inhibited IL-1-induced monocyte CD44 binding to HA."
sparser
"The protection was associated with suppression of early IL-10 and IL-13 production as well as expansion of CD44 hi CD4 + and CD8 + T cells."
IGF1R affects CCL5
| 3
| 3
sparser
"In tumor lesions, the local expression of CCL5 was negatively associated with the expression of the IGF1R (r =-0.6614, p < 0.0001) (Figure xref )."
sparser
"In tumor lesions, the local expression of CCL5 was negatively associated with the expression of IGF1R."
sparser
"In the present study, we showed that the level of CCL5 was significantly increased by shRNA-induced IGF1R silencing, and in tumor lesions, the local expression of CCL5 was negatively associated with the expression of the IGF1R, suggesting that IGF1R took part in immunoregulation in the tumor microenvironment."
HLA-A affects DERL1
2 1 |
2 1 |
biogrid
No evidence text available
biogrid
No evidence text available
hprd
No evidence text available
GRIN1 affects CANX
1 2 |
1 2 |
biogrid
No evidence text available
hprd
No evidence text available
hprd
No evidence text available
GRIA1 affects ADAM10
| 2 1
| 2 1
sparser
"These results suggest an interdependence between the alterations of ADAM10 and GluR1 binding to SAP97 in Hp of AD patients."
reach
"These results suggest an interdependence between the alterations of ADAM10 and GluR1 binding to SAP97 in Hp of AD patients.Although the etiology of AD remains unclear, the leading hypothesis is that accumulation of Abeta peptide is the causative event of the pathogenesis (Hardy and Selkoe, 2002)."
sparser
"These data point to an alteration of SAP97 capability to bind ADAM10 and GluR1, but not NR2A, in AD Hp."
GPNMB affects CD44
| 1 2
| 1 2
sparser
"A similar study from the same lab found that GPNMB can directly bind to CD44 in mesenchymal stem cells [ xref ]."
reach
"A similar study from the same lab found that GPNMB can directly bind to CD44 in mesenchymal stem cells [XREF_BIBR]."
reach
"Previous work from the Safadi laboratory demonstrated that GPNMB can directly bind to CD44 in osteoclast precursor cells through docking studies and immunoprecipitation [XREF_BIBR]."
DNER affects CD274
| 3
| 3
sparser
"BET inhibitors decrease binding of IRF1 to PD-L1 promoter."
sparser
"Instead, we show that BET inhibitors decrease binding of IRF1 protein to the PD-L1 promoter."
sparser
"We also demonstrate that BET inhibitors decrease binding of IRF1 to the PD-L1 promoter in PSCs."
CXCR4 affects CXCL16
| 2 1
| 2 1
sparser
"Kaplan-Meier analysis revealed that patients with high CXCR6 expression had significantly lower OS than did those with low CXCR6 expression ( P = 0.049), whereas the level of CXCL12, CXCR4, and CXCL16 expression was not associated with the OS of cervical cancer patients ( xref )."
sparser
"CXCR4 and CXCL16 expressions were closely associated with overall survival in Kaplan-Meier analysis ( χ 2 = 4.67, P < 0.05; χ 2 = 4.48, P < 0.05)."
reach
"CXCR4, CXCR5 and CXCR6 bind their respective homeostatic chemokine ligands, SDF-1 and CXCL12, BCA-1 and CXCL13 and CXCL16."
CD44 affects ADAM17
| 3
| 2
sparser
"This observation together with our findings suggests that TPA-mediated Rac activation promotes the redistribution of both pro form of ADAM17 and CD44 to the plasma membrane, leading to ADAM17 activation and clustering of the activated protease and substrate, which might be required for triggering the proteolytic processing."
sparser
"Conversely, no colocalization of ADAM17 and CD44 could be detected ( Figure 7b ) indicating that there is no constitutive interaction between CD44 and ADAM17."
| 1
sparser
"Calcium influx augmented the release of exosomes containing functionally active forms of ADAM10 (a disintegrin and metalloprotease 10) and ADAM17 [TACE (tumour necrosis factor a-converting enzyme)] as well as CD44 and L1 cytoplasmic cleavage fragments."
CD274 affects PTPN6
| 3
CD274 phosphorylates PTPN6.
| 2
CD274 phosphorylates PTPN6. 2 / 2
| 2
sparser
"PD-1 activation in DRG nociceptive neurons by PD-L1 induced phosphorylation of the tyrosine phosphatase SHP-1, inhibited sodium channels and caused hyperpolarization through activation of TREK2 K + channels."
sparser
"Moreover, PD-L1-induced SHP-1 phosphorylation was blocked by SHP-1 inhibitor sodium stibogluconate (SSG) in dissociated DRG neurons ( xref )."
CD274 binds PTPN6.
| 1
| 1
sparser
"In particular, we show that the inability of exogenous WT Tregs to function in PD-L1 deficient iALI mice is associated with the recruitment of SHP-1 to the injured lung."
VEGFA affects TLR4
| 1 1
| 1 1
reach
"We demonstrated here, for the first time, that both drugs have potent pro inflammatory effects, mediated via activation of Toll like receptor 4 on the endothelial cell surface by drug bound to VEGF-A."
sparser
"We report that both drugs markedly increase gene expression and protein secretion of chemokines on endothelial cells, a process that is dependent on drug binding to secreted VEGF-A with subsequent activation of Toll-like receptor 4."
VEGFA affects INSR
| 1 1
VEGFA increases the amount of INSR.
| 1
VEGFA increases the amount of INSR. 1 / 1
| 1
reach
"Our results have shown that the insulin receptor regulates VEGF-A transcription and expression, which is consistent with literature that IGF-I and insulin regulate VEGF-A through hypoxia inducible factor-1alpha (HIF1alpha) in other types of cancer."
VEGFA binds INSR.
| 1
VEGFA binds INSR and KIT. 1 / 1
| 1
sparser
"Moreover, important mechanisms of biological interaction between VEGFA-KIT and VEGFA-INSR were also observed."
VEGFA affects FGFR1
| 2
| 2
sparser
"VEGFA was significantly associated to FGFR1 , HIF1A , KDR1 ( VEGFR) , PDGFA and FGF2 . xref depicts the correlation between gene expression levels."
sparser
"Increased levels of c-met are associated with VEGFA and FGFR-1, all of which contribute to angiogenic processes [ xref ]."
VEGFA affects AQP1
| 1 1
| 1 1
sparser
"AQP1 may interact with VEGFA and play a role in VM, especially under hypoxic conditions, but the heterogeneity of MM cells may result in different dominant pathways between patients."
reach
"AQP1 may interact with VEGFA and play a role in VM, especially under hypoxic conditions, but the heterogeneity of MM cells may result in different dominant pathways between patients."
TRPM7 affects TNF
| 2
| 2
sparser
"Our results further showed that TNFα did not directly interact with TRPM7, indicating that TNFα was not a direct activator of TRPM7 channel."
sparser
"Furthermore, co-immunoprecipitation assay showed that TNFα did not directly interact with TRPM7 in SNU739 and HLF cells (Additional file xref : Figure S1i)."
TRPC3 affects ADAM17
| 1 1
| 1 1
sparser
"In proliferating basilar artery smooth muscle cells or basilar arteries of hypertensive rats, co-immunoprecipitation assay revealed an interaction between TRPC3 and ADAM17 upon Ang II stimulation."
reach
"In proliferating basilar artery smooth muscle cells or basilar arteries of hypertensive rats, co-immunoprecipitation assay revealed an interaction between TRPC3 and ADAM17 upon Ang II stimulation."
TRPA1 affects IL1B
| 1 1
| 1 1
reach
"In addition to the mechanisms described above, a more direct interaction between TRPA1 and IL-1beta in MSU crystal induced inflammation is possible, as TRPA1 activation has been reported to enhance IL-1beta production in keratinocytes [XREF_BIBR], and a similar effect was found in the present study in the air-pouch model."
sparser
"In addition to the mechanisms described above, a more direct interaction between TRPA1 and IL-1β in MSU crystal-induced inflammation is possible, as TRPA1 activation has been reported to enhance IL-1β production in keratinocytes [ xref ], and a similar effect was found in the present study in the air-pouch model."
TNFRSF1A affects IL1RN
| 2
sparser
"Several investigators also found increases in sTNFR1 in the serum of SZ patients. xref reported association of TNFR1 and IL-1RA with general severity of psychotic symptoms in SZ."
sparser
"Hope et al. (2013) reported association of TNFR1 and IL-1RA with general severity of psychotic symptoms in SZ."
| 2
sparser
"Nevertheless, additional studies are needed to determine if the unexpected hepcidin response in anemic Slc39a14 −/− -FeO mice is associated with erythropoiesis-driven factors that repress hepatic hepcidin production."
sparser
"Although BMP6 is known to upregulate hepcidin expression, higher levels of BMP6 mRNA in Slc39a14 −/− -FeO mice compared with WT-FeO mice were not associated with further increases in hepcidin expression ( xref )."
TNF affects SORT1
| 1 1
| 1 1
reach
"Using coimmunoprecipitation and surface plasmon resonance (SPR) we replicated the interaction between PGRN and sortilin and that between TNF and TNFRI/II, but not the interaction between PGRN and TNFRs."
sparser
"Here, we report that in addition to trophic factor production, muscle produces proBDNF that may promote MN death via interaction with the p75 NTF receptor and sortilin."
TNF affects ROBO1
| 2
| 2
reach
"Slit processing generates an N-terminal fragment (SlitN) that binds to Robo1 and Robo2 receptors and mediates Slit repulsive activity, as well as a C-terminal fragment (SlitC) with an unknown receptor and bioactivity."
reach
"Its N-terminal fragment (approximately 120kDa), termed Slit2N, can bind to Robo1 to inhibit gp120 and co-receptor-induced cytoskeletal rearrangements associated with LIMK- and cofilin regulated actin polymerization in activated and resting CD4 + T cells."
TNF affects RHO
| 2
TNF activates RHO. 2 / 2
| 2
sparser
"It is established that TNFα can activate Rho family GTPases, including Rac/Cdc42 [ xref – xref ] and RhoA [ xref ]."
sparser
"TNF- α -induced activation of Rho family GTPases has also been reported in diverse cellular contexts ( xref - xref ), but the molecular events underlying and regulating the activation process remain poorly understood."
TNF affects PTPN6
| 2
| 2
sparser
"In endothelial cells, SHP-1 is physically associated with VEGFR2 and is also required for both TNFα-mediated and tissue-inhibitor of metalloproteinases (TIMP)-mediated inhibition of angiogenesis xref ."
sparser
"SHP-1 is also associated with the inhibition of endothelial cell proliferation mediated by TNF-alpha and the reduction in angiogenesis by the inactivation of KDR/flk-1 [ xref ]."
TNF affects PLXNA3
| 2
TNF activates PLXNA3. 2 / 2
| 2
sparser
"TNFα alone does not strongly activate J-Lat 6.3, 8.4 and 9.2 cells, as shown in Fig. xref , and as reported [ xref ]."
sparser
"Although there were differences in the extent of activation that depended on the order of addition, Aza-CdR always enhanced activation of J-Lat 6.3 by TNFα, with FI-Aza ranging between 3.8 and 1.9."
TNF affects PLXNA2
2 |
2 |
biogrid
No evidence text available
biogrid
No evidence text available
TNF affects NRP1
2 |
2 |
biogrid
No evidence text available
biogrid
No evidence text available
TNF affects NEO1
2 |
2 |
biogrid
No evidence text available
biogrid
No evidence text available
TNF affects KCNH1
| 2
TNF inhibits KCNH1. 2 / 2
| 2
sparser
"Analysis of several satellite cell regulators revealed that TNFα is capable of inhibiting Notch-1 in satellite cells and C2C12 myoblasts, which was also found to be dependent on NF-κB. Notch-1 inhibition occurred at the mRNA level suggesting a transcriptional repression mechanism."
sparser
"Analysis of several satellite cell regulators revealed that TNFalpha is capable of inhibiting Notch-1 in satellite cells and C2C12 myoblasts, which was also found to be dependent on NF-kappaB."
TNF affects HRH1
| 2
TNF inhibits HRH1.
| 1
TNF inhibits HRH1. 1 / 1
| 1
sparser
"These results show that IL-1 alpha and TNF-alpha inhibit histamine- and carbachol-stimulated isolated parietal cell secretion and that, for IL-1 alpha, this effect does not depend on mucosal prostaglandin synthesis."
TNF binds HRH1.
| 1
| 1
sparser
"The release of pre-formed histamine and TNF-α and the newly-formed arachidonic acid metabolites are largely responsible for the early symptoms of the asthmatic reaction including bronchoconstriction [ xref , xref ]."
| PMC
TLR4 affects NAMPT
| 1 1
| 1 1
sparser
"Furthermore, visfatin has been associated with the innate immune receptor toll-like receptor 4 (TLR4), which plays a key role in cartilage and bone inflammatory and catabolic responses."
reach
"Our analysis of the structure of the MD-2 and LPS complex, however, indicates that LPS binding to TLR4 maps to the protruding region of NAMPT and PBEF (S402-N412), suggesting that NAMPT and PBEF may intrinsically adopt a conformation capable of direct TLR4 binding and activation."
TLR4 affects BST2
| 2
| 2
sparser
"This study was aimed to assess the effects of BUD, ACL and FO in bronchial epithelial cells exposed to cigarette smoke extract (CSE) by evaluating: a) Expression of TLR4 and survivin and LPS binding by flow cytometry; b) expression of HDAC2, HDAC3, SIRT1 and FoxO3 and activation of the ERK 1/2 pathway by western blot; c) IL-8 mRNA levels and release by Real Time-PCR and ELISA, respectively."
sparser
"This decrease in TLR4 mRNA was associated with decreased surface expression of TLR4/MD2 complex, measured by flow cytometry (66 ± 14%, n=4, p <0.03) ( xref )."
TLR4 affects ATP6AP1
| 2
| 2
sparser
"The interaction between neurotransmitter NMDA receptor subunit 1 (GluN1) and immune receptor TLR4 in N9 and EOC 20 microglial cells was examined in the present study."
sparser
"The aim of the present study was to determine whether LPS induces interactions between the Toll-like receptor 4 (TLR4) and the ionotropic glutamate receptor N-methyl-D-aspartate subunit 1 (GluN1) in N9 and EOC 20 microglial cells."
TIMP1 affects F3
| 2
| 2
reach
"Besides, an association between TIMP-1 and APACHE-II (rho = 0.33; P = 0.001), TF (rho = 0.43; P < 0.001), and TNF-alpha (rho = 0.43; P < 0.001) was found in our study."
reach
"We found an association between TIMP-1 and APACHE-II (rho = 0.33; P = 0.001), TF (rho = 0.43; P < 0.001) and TNF-alpha (rho = 0.43; P < 0.001) (XREF_TABLE)."
THBS1 affects ITGAV
1 1 |
1 |
biogrid
No evidence text available
1 |
hprd
No evidence text available
THBS1 affects F3
| 2
| 2
sparser
"The results of the current study indicated that anti-inflammatory TIPE2 levels are associated with levels of the coagulation substances TF and TSP-1."
sparser
"However, further studies are required to determine whether TIPE2 participates in the pathogenesis of asthma by interacting with the coagulation substances TF and TSP-1."
TGFB1 affects PTGER4
| 1 1
TGFB1 increases the amount of PTGER4.
| 1
TGFB1 increases the amount of PTGER4. 1 / 1
| 1
isi
"Furthermore, we demonstrated a synergistic effect of TGF-beta1 and Vit D on the expression of COX-2 and synthesis of PGE2, and this effect could be attenuated by silencing the expression of VDR."
TGFB1 binds PTGER4.
| 1
| 1
reach
"In conclusion a positive association between PGE2 and TGFbeta1 and bone formation markers-osteoprotegerin and osteocalcin, as well as a comparable BMD in UC patients and healthy individuals was shown."
TGFB1 affects PLAUR
2 |
Transcriptionally active TGFB1 increases the amount of PLAUR. 2 / 2
2 |
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
TGFB1 affects PAX8
2 |
TGFB1 inhibits PAX8.
1 |
TGFB1 inhibits PAX8. 1 / 1
1 |
signor
"DNA Binding Activity of Pax8 to the NIS Promoter Is Reduced by Smad3. TGF-β decreases Pax8 DNA binding to the NIS promoter and also found a physical interaction between Pax8 and Smad3."
TGFB1 binds PAX8.
1 |
1 |
signor
"DNA Binding Activity of Pax8 to the NIS Promoter Is Reduced by Smad3. TGF-β decreases Pax8 DNA binding to the NIS promoter and also found a physical interaction between Pax8 and Smad3."
TGFB1 affects NR3C2
| 2
| 2
sparser
"Meanwhile, gene NR3C2, FOXQ1 and TGFB1 interacted with multiple genes."
sparser
"Similarly, TUDCA induced GR and MR nuclear translocations (p < 0.05) and markedly prevented MR protein changes associated with TGF-beta1 (p < 0.05) without affecting GR protein levels."
TGFB1 affects HRH1
| 2
TGFB1 inhibits HRH1.
| 1
TGFB1 inhibits HRH1. 1 / 1
| 1
sparser
"The results suggest that there are pharmacological differences in the response of isolated parietal cells to TGF alpha-mediated inhibition of histamine and carbachol."
TGFB1 binds HRH1.
| 1
| 1
sparser
"These studies demonstrate that histamine is an important regulator of fibroblast IL-11 production, that histamine interacts with TGF-beta 1 in the induction of this cytokine, and that this interaction is mediated, to a great extent, by a pretranslational mechanism that is dependent on H1 receptors and a calcium/calmodulin-dependent activation pathway."
TGFB1 affects ATP6AP2
| 1 1
| 1 1
reach
"Our findings demonstrate that there are strong interactions between prorenin, ATP6AP2, and TGFB1 and that this system has a greater capacity in female amnion to stimulate profibrotic pathways, thus maintaining the integrity of the fetal membranes."
sparser
"Our findings demonstrate that there are strong interactions between prorenin, ATP6AP2, and TGFB1 and that this system has a greater capacity in female amnion to stimulate profibrotic pathways, thus maintaining the integrity of the fetal membranes."
TGFB1 affects ANTXR1
| 2
TGFB1 binds ANTXR1.
| 1
| 1
sparser
"Further CHIT1 interacts with TGF-β1 to augment fibroblast TGF-β receptor 1 and 2 expression and TGF-β-induced signaling. xref As an effector molecule of macrophage differentiation and activation, the role of CHIT1 is getting more attention as a modifier of tissue fibrosis or airway remodeling in addition to its role in innate immune response. xref , xref Since ILD and COPD are representative chronic lung diseases resulting from abnormal injury and tissue repair responses, the role and effects of CHIT1 in the development of these diseases are of great interest to understand the pathogenic mechanism of these diseases."
TGFB1 activates ANTXR1.
| 1
TGFB1 activates ANTXR1. 1 / 1
| 1
sparser
"TGFβ1-induced MXRA5 up-regulation was prevented by either interference with TGFβ1 activation of the TGFβ receptor 1 (TGFBR1, ALK5) or by the vitamin D receptor agonist paricalcitol."
SPP1 affects S1PR1
2 |
2 |
omnipath
No evidence text available
omnipath
No evidence text available
SPP1 affects CXCR4
| 1 1
| 1 1
sparser
"Zhang et al. demonstrated that in cell lines from hepatocellular carcinoma, as an analogue of SDF-1, OPN can also bind to CXCR4 and promote cell migration [ xref ]."
reach
"Zhang et al. demonstrated that in cell lines from hepatocellular carcinoma, as an analogue of SDF-1, OPN can also bind to CXCR4 and promote cell migration [XREF_BIBR]."
SPP1 affects CD4
| 2
| 2
sparser
"Studies have also shown that the absence of OPN is associated with B-cell abnormalities including the generation of memory B-cells and their persistence as early as primary HIV or SIV infection ; decreased levels of OPN have also been associated with impaired CD4 T-cell migration and survival ."
sparser
"Here we report that activation of ICOS in CD4(+) T cells promoted interaction of the p85α regulatory subunit of the signaling kinase PI(3)K and intracellular osteopontin (OPN-i), followed by translocation of OPN-i to the nucleus, its interaction with Bcl-6 and protection of Bcl-6 from ubiquitin-dependent proteasome degradation."
SORT1 affects LDLR
| 2
| 2
reach
"Sortilin, SorLA and HAB bind the LDL receptor associated protein RAP [4,11,12]."
reach
"Because both sortilin and Tg bind to the low-density lipoprotein receptor associated protein (RAP), we investigated whether RAP serves such a function."
SLC3A2 affects CD44
1 | 1
1 | 1
biogrid
No evidence text available
sparser
"Such analysis with antibodies to CD44 revealed that both xCT and CD98hc indeed physically interact with CD44 ( Figure 5 E)."
SDC4 affects GPNMB
| 2
| 2
reach
"gpNMB on antigen presenting cells inhibits T-cell activation by binding to syndecan-4 (SD-4) on T cells 45, 46."
reach
"XREF_BIBR, XREF_BIBR GPNMB binding to syndecan-4 leads to the recruitment of syntenin and the CD148 protein tyrosine phosphatase, the activation of which occurs following complex formation and is required for syndecan-4 mediated suppression of T-cell activation."
SCARB1 affects LDLR
| 2
| 2
sparser
"In LDL receptor–deficient mice, attenuated expression of SCARB1 was associated with increased LDL-C and accelerated atherosclerosis [ xref , xref ]."
sparser
"In LDL receptor-deficient mice, attenuated expression of SCARB1 was associated with increased LDL-C and accelerated atherosclerosis xref , xref ."
RNF149 affects ACVR1
2 |
2 |
biogrid
No evidence text available
biogrid
No evidence text available
RGMB affects CD274
| 2
| 2
reach
"In contrast, PD-L1 and PD-L2 can exert inhibitory function independent of PD-1 by binding to B7-1 (CD80) and RGMb, respectively."
reach
"XREF_BIBR PD-1 binds programmed death ligand 1 and 2, while PD-L1 also interacts with CD80 and PD-L2 interacts with RGMb (repulsive guidance molecule B)."
PTPRA affects CD63
| 1 1
| 1 1
sparser
"Immunoprecipitation of tissue lysates from renal cortex and outer medulla or 293T cells transfected with CD63 reveals that CD63 was associated with RPTPalpha both in situ and in transfected cells."
trips
"Immunoprecipitation of tissue lysates from renal cortex and outer medulla or 293T cells transfected with CD63 reveals that CD63 was associated with RPTPalpha both in situ and in transfected cells."
PTGER4 affects IL1B
| 2
| 2
reach
"Furthermore, IL-1 beta can interact with NO and PGE2 during steroid genesis [XREF_BIBR]."
reach
"Following the above concept, we have at- tempted to characterize in vitro the interactions between IL-1B, IL-6, TNF-ot, LTB4 and PGE2, the major pro in- flammatory cytokines and eicosanoids of hp-Mth."
PTCH1 affects HLA-A
2 |
2 |
biogrid
No evidence text available
biogrid
No evidence text available
PRNP affects ADAM10
| 1 1
| 1 1
reach
"Our data here provide the solid molecular basis for the endoproteolysis of ADAM10 on PrP molecules and interaction between ADAM10 and PrP (C)."
sparser
"Our data here provide the solid molecular basis for the endoproteolysis of ADAM10 on PrP molecules and interaction between ADAM10 and PrP(C)."
PLXNB2 affects LMAN2
2 |
2 |
biogrid
No evidence text available
biogrid
No evidence text available
PLXNA3 affects HLA-E
2 |
2 |
biogrid
No evidence text available
biogrid
No evidence text available
PAQR3 affects LDLR
| 2
| 2
sparser
"The interaction of PAQR3 with LDLR and PCSK9 was analyzed by co-immunoprecipitation and immunofluorescent staining."
sparser
"PAQR3 interacts with the β-sheet domain of LDLR and the P-domain of PCSK9 respectively."
OSM affects NR3C2
| 2
| 2
sparser
"The 32,000-Mr form of oncostatin M was not produced by cells transfected with plasmids (G195 and G196) in which a potential trypsinlike cleavage site within the hydrophilic C-terminal domain was altered by site-directed mutagenesis."
sparser
"A 32,000-Mr fragment was produced by trypsin treatment of the 36,000-Mr form of oncostatin M. These observations suggest that the 32,000-Mr form of oncostatin M was derived from the 227-amino-acid propeptide by proteolytic cleavage at or near the paired basic residues at positions 195 and 196."
OPRM1 affects HNRNPK
| 2
| 2
sparser
"To determine the physical interaction of hnRNP K, RPA32, αCP1, αCP2, αCP2-KL, and αCP3 with the mouse Oprm1 promoter, EMSAs were performed using in vitro translated [ 35 S]methionine-labeled proteins ( xref ) and a single strand oligonucleotide (NS) ( xref ) derived from the Oprm1 single strand DNA sequence."
sparser
"Heterogeneous nuclear ribonucleoprotein K (hnRNP K) binds to the promoter region of mu-opioid receptor (MOR) to regulate its transcriptional activity."
NTRK1 affects HNRNPK
1 | 1
1 | 1
sparser
"Moreover, the NGF/TrkA-dependent inhibition of cell viability was significantly enhanced by knockdown of hnRNP K using small interfering RNA, demonstrating that hnRNP K is a novel target associated with the regulation of TrkA-dependent SK-N-MC cancer cell death enhanced by NGF."
biogrid
No evidence text available
NR3C2 affects BST2
| 2
| 2
sparser
"Proc Natl Acad Sci, US 73, 2881-2886 46 Darzynkiewicz Z, Traganos F, Staiano- Coico I,, Kapuscin- ski J, Melamed MR (1982) Interactions of rhodamine 123 with living cells studied by flow cytometry."
sparser
"Cytometry 1, 98-108 30 Darzynkievicz Z, Traganos F, Staiano-Coico L, Kapunscin- ski J, Melamed MR (1982) Interactions of rhodamine 123 with living cells studied by flow cytometry."
NPC1 affects CTSD
| 1 1
| 1
reach
"It has been recently shown that aspartyl cathepsin CtsD most likely indirectly binds to NPC1 and that NPC1 could modulate CtsD levels and processing [XREF_BIBR]."
CTSD binds ABCA1 and NPC1. 1 / 1
| 1
sparser
"First, CYCLO stimulated lysosomal proteolytic activity by increasing cathepsin D activity, levels of cathepsins B and D and two proteins known to interact with cathepsin D, NPC1 and ABCA1."
MME affects CD4
1 | 1
CD4 binds MME. 2 / 2
1 | 1
sparser
"Interestingly, antibody-mediated cross-linking of CD4 stimulates Lck kinase activity in murine thymocytes ( xref ) and T cell clones ( xref ), suggesting that binding of CD4 to MHC class II polypeptides under physiologic conditions may, by itself, stimulate Lck activity."
biogrid
No evidence text available
LPAR1 affects ACP2
2 |
2 |
biogrid
No evidence text available
biogrid
No evidence text available
LDLR affects IL6ST
| 2
| 2
reach
"XREF_BIBR, XREF_BIBR Our network analyses using 2 different bioinformatics tools also revealed a central role for MMP9 in AAA, with IPA identifying direct interactions between ERG, IL6R and LDLR, and MMP9, and Consensus PathDB identifying a direct interaction between ERG and MMP9 with secondary interactions between both SMYD2 and LDLR and MMP9."
reach
"Both analyses revealed a central role for MMP9 in AAA, with IPA identifying direct interactions (physical contact between 2 molecules such as binding or phosphorylation) between ERG, IL6R and LDLR, and MMP9, and Consensus PathDB identifying a direct interaction between ERG and MMP9 with secondary interactions (interactions without physical contact, such as signaling events) between both SMYD2 and LDLR, and MMP9."
KRT1 affects CTSD
| 1 1
| 1
reach
"In the MB-435-based network 2 (XREF_FIG), the involvement of the TNFalpha and TGFbeta signaling axis is associated with RPSA, GLO1, and CTSD interactions with TNF as well as CTSD and KRT1 interactions with TGFB1."
TGFB1 binds CTSD and KRT1. 1 / 1
| 1
sparser
"In the MB-435-based network 2 ( xref ), the involvement of the TNFα/TGFβ signaling axis is associated with RPSA, GLO1, and CTSD interactions with TNF as well as CTSD and KRT1 interactions with TGFB1."
JMJD6 affects BST2
| 2
| 2
sparser
"We quantified the binding of fluorescent Annexin V to accessible phosphatidylserine in the outer cell membrane by cytometry, as a measure of early apoptotic events."
sparser
"Cytoplasmic free calcium mobilization in platelets, expression of P-selectin, phosphatidylserine, and microparticle formation, measured by whole blood flow cytometry, in hypertensive patients."
ITGB1 affects ITGAM
| 2
| 2
sparser
"Therefore, compared to those in WT or apoE -/- mice on ND, CD11c + monocytes in apoE -/- on HFD were not only increased in number, but also displayed increased granularity with increased expression of CD11b and CD29, which are associated with cell activation."
sparser
"These CD11c + monocytes contained abundant lipid in the cytoplasm and expressed high levels of CD11b and CD29, which are associated with cell activation."
ITGB1 affects BSG
2 |
2 |
hprd
No evidence text available
hprd
No evidence text available
ITGAM affects LY75
| 1 1
ITGAM increases the amount of LY75.
| 1
ITGAM increases the amount of LY75. 1 / 1
| 1
reach
"Chimeric antibodies against lectin antigen-uptake receptors efficiently target antigen to specific DC subsets, including DCIR2 expressed by CD11b + cDC2 and DEC-205 expressed by CD8 + cDC1 and some migratory DCs."
ITGAM binds LY75.
| 1
| 1
sparser
"An additional study investigating intratracheal inoculation of Y. pestis showed the interaction of this bacterium with CD11c + DEC205 + CD11b- cells in the airways and lung."
ITGAM affects CD47
| 1 1
| 1 1
reach
"Using proximity ligation assay, the authors convincingly demonstrate a physical association between CD11b and CD47 on the retinal MC in the AMD models."
sparser
"Also, it is unknown whether more efficient association of CFH(Y402H) with CD47-CD11b has a parallel in its complement-inhibiting activity."
IL6ST affects ADAM17
| 2
| 2
reach
"To reveal the mechanism of sIL-6R production, we investigated the expression of ADAM17, an important mediator of membrane bound IL-6R shedding."
reach
"As shown in XREF_FIG, both IL-6R and IL-6R-5N could be efficiently coimmunoprecipitated with MPD17-CANDIS, indicating that the glycans are not mandatory for the IL-6R and ADAM17 interaction."
IL31RA affects GRN
| 1 1
| 1
reach
"Therefore, even if the GpL domain of GpL-TNF did bind irreversibly to PGRN, a huge surplus of " GpL-free " PGRN would have been available in our experiments to block TNFR1 and TNFR2 binding by GpL-TNF (or by GpL-TNF in complex with PGRN)."
TNF binds IL31RA and GRN. 1 / 1
| 1
sparser
"Therefore, even if the GpL domain of GpL-TNF did bind irreversibly to PGRN, a huge surplus of “GpL-free” PGRN would have been available in our experiments to block TNFR1/TNFR2 binding by GpL-TNF (or by GpL-TNF in complex with PGRN)."
IL2RG affects CAPNS1
1 1 |
1 1 |
biogrid
No evidence text available
hprd
No evidence text available
IL1RN affects F3
| 2
IL1RN inhibits F3.
| 1
IL1RN inhibits F3. 1 / 1
| 1
sparser
"Analysis of the expression kinetics and regulation by IL-1 of the β-glucan-induced TFs identified by the genome-wide gene expression study uncovered the NFKBIZ gene (encoding IκB-ζ) as the earliest expressed, β-glucan-induced, TF that was inhibited by IL-1RA."
IL1RN binds F3.
| 1
| 1
sparser
"These treatments were also associated with increased IL-1ra, CD142, and VEGF ( xref , xref )."
IL1B affects SDC4
| 2
IL1B increases the amount of SDC4. 2 / 2
| 2
reach
"Wang et al. have demonstrated that IL-1beta treatment increases syndecan-4 (SDC4) expression and its promoter activity by activating NF-kappaB, leading to enhanced ADAMTS-5 synthesis and aggrecan degradation in human NP cells [72]."
reach
"Importantly, analysis of human NP tissues showed a strong correlation between levels of SDC4 and ADAMTS-5 with aggrecan neoepitopes, suggesting that an increase in SDC4 expression by cytokines IL-1beta and TNF-alpha contributes to aggrecan turnover in human disease."
IL1B affects PTGFR
| 2
IL1B increases the amount of PTGFR. 2 / 2
| 2
reach
"Induction of cyclooxygenase-2 and prostaglandin F2alpha receptor expression by interleukin-1beta in cultured human granulosa-luteal cells."
reach
"The IL-1beta treatment implicated by microarray analysis increased gene expression levels of PTGS-2, PTGFR, NFkappa-B p65, IL-17, and IL-8."
IL1B affects ITGB1
2 |
Transcriptionally active IL1B decreases the amount of ITGB1. 2 / 2
2 |
biopax:ctd
No evidence text available
biopax:ctd
No evidence text available
IL1A affects HRH1
| 2
IL1A inhibits HRH1. 2 / 2
| 2
sparser
"These results show that IL-1 alpha and TNF-alpha inhibit histamine- and carbachol-stimulated isolated parietal cell secretion and that, for IL-1 alpha, this effect does not depend on mucosal prostaglandin synthesis."
sparser
"IL-1 alpha (500 and 1000 ng/ml) inhibited histamine plus IMX-stimulated AP uptake by 36% and 34%, respectively."
IL15 affects CD44
| 2
| 2
reach
"IL-15 interacts with the gamma chain of the IL-2 receptor (CD122) and hence the IFN-I reactive CD8 CD44 hi T cells also express CD122."
reach
"Although IL-15Ralpha confers high binding affinity for IL-15, whether this chain is essential for IL-15 binding by CD44 hi CD8 + cells in mice, however, is unclear."
IL10 affects IFNAR1
| 2
| 2
sparser
"Two way ANOVA analysis of IL-10 expression showed a significant effect of treatment ( F  = 7.04, df 1,15, p  = 0.0181) but not of strain ( F  = 2.06, df 1,15, p  = 0.1718) and no interaction ( F  = 3.40, df 1,15, p  = 0.0850) indicating that the poly I:C-induced increase in hippocampal COX-2 and IL-10 expression is attenuated in IFNAR1 −/− mice."
sparser
"It will be interesting to investigate whether IFNAR equally interacts with IL-10 and IL-22 receptor complexes."
IL10 affects ANTXR1
| 2
| 2
sparser
"Also, a recent study used in-vitro testing of peripheral blood monocytes of patients treated with TNFi to identify that transmembrane TNF crosslinking induced concentrations of soluble TNF receptor 1, soluble IL-1 receptor 1 and IL-10 strongly associated with good EULAR response (AUC 0.91–1.00) [ xref ]."
sparser
"Human IL-10 binds IL-10 receptor 1 (IL-10R1) with 1000-fold higher affinity than EBV IL-10."
HNRNPK affects GRIA1
| 2
| 2
sparser
"In contrast with the effect of BDNF, activation of the receptors for PDGF (PDGFR-β), which also belong to the receptor tyrosine kinase family, did not decrease the interaction of hnRNP K with GluA1, GluN1, and BDNF mRNAs."
sparser
"Importantly, on TrkB-Fc infusion, HFS did not affect the interaction of hnRNP K with the GluN1, GluA1, and hnRNP K mRNAs ( xref ), showing a key role for TrkB signaling in the regulation of the RNP interaction with the transcripts after induction of LTP."
HNRNPK affects CRY1
1 | 1
1 | 1
sparser
"We also do not know whether the hnRNPK that is phosphorylated by ATM is bound to RNA, or whether such phosphorylation affects hnRNPK binding to RNA and vice versa."
biogrid
No evidence text available
HLA-A affects ERBB3
2 |
2 |
biogrid
No evidence text available
biogrid
No evidence text available
GLG1 affects CD44
| 2
| 2
sparser
"E-selectin binds to glycosylated CD44 and E-selectin ligand 1 (ESL1) [ xref ]."
sparser
"Here, using mice lacking T-synthase in endothelial and hematopoietic cells, we found that E-selectin bound to CD44 and ESL-1 in lysates of T-synthase-deficient neutrophils."
FCGR1A affects IGF1R
| 2
FCGR1A activates IGF1R. 2 / 2
| 2
sparser
"Many years later, Pritichard et al. reported that IGF-I and GD-IgG could bind and activate IGF-IR ( xref )."
sparser
"Importantly, the finding of an induction by GD-IgG on hyaluronan production in the face of no response to TSH suggests the potential for GD-IgG activating IGF-1R. In aggregate, the reports of van Zeijl et al ( xref ) may share important similarities with that of Smith and Hoa ( xref )."
ENO1 affects EDNRA
| 2
| 2
sparser
"Ru(PPh(3))(3)HCl reacts with 1,1'-bis(diphenylphosphino)ferrocene (dppf) to give the 16-electron complex Ru(dppf)(PPh(3))HCl (1d), which upon treatment with NaBAr(4)(F), affords [Ru(dppf){(eta(6)-C(6)H(5))PPh(2)}H]BAr(4)(F) (8), in which the PPh(3) ligand binds eta(6) through one of the PPh(3) phenyl rings."
sparser
"A slightly bulkier m-terphenyl thiolate, SDmp, prevents its nickel complex from forming a Ni-Ni bond, and the mononuclear nickel(I) center of 3 is bound to PPh(3) and SDmp through interactions with the sulfur and a eta(2)-mesityl."
DMXL2 affects ANTXR1
2 |
2 |
biogrid
No evidence text available
biogrid
No evidence text available
CXCR4 affects C3
| 2
| 2
sparser
"The migration of PECs induced by C3a was associated with an increased expression (P < 0.05) of CXCR4 ( xref )."
sparser
"The present findings in mice had an important clinical correlate in ten patients with proteinuric nephropathy characterized by activated CD24-positive PECs, who exhibited glomerular accumulation of C3 and C3a associated with high expression of both CXCR4 and GDNF in the glomerular lesions."
CXCR4 affects BST2
| 2
| 2
sparser
"At multiple time points, we measured binding to surface CXCR4 by flow cytometry using 3 anti-CXCR4 antibodies: 12G5, 1D9, and 2B11."
sparser
"We next examined the binding of HCLX to cell-surface CXCR4 by flow cytometry."
CD44 affects BST2
| 2
| 2
sparser
"Treatment of MUC1-positive CD138+ cells from LEN-sensitive Patient 1 with GO-203 was associated with suppression of CD44 expression as determined by flow cytometry ( xref , left; xref )."
sparser
"Given that circulating CD45 - CD90 + CD44 + cells detected by flow cytometry were associated with early HCC recurrence, circulating cancer stem cell markers may have significant prognostic values in HCC [ xref ]."
CD4 affects CD164
| 2
| 2
sparser
"The results demonstrate that the malignancy genes are predominantly associated with CD164 + CD4 + T cells and that CD164 is also expressed in skin–residing CD4 + T cells of CTCL patients."
sparser
"The expression of Sézary signature genes, FCRL3, Tox and miR-214 is mainly associated with circulating CD164 + CD4 + T cells in Sézary syndrome patients."
CD4 affects CCL5
| 2
| 2
sparser
"CIBERSORT analysis suggested that a high CCL5 expression was associated with recruitment of CD8 T cells, CD4 activated T cells, NK activated cells and macrophages M1."
sparser
"CIBERSORT analysis () xref in five public TNBC datasets suggested that a high CCL5 expression (comparing the upper tertile vs the lower tertile) is associated with recruitment of CD8 cells, activated CD4 memory T cells, activated NK cells and Macrophages M1 ( Fig.  xref ) ."
CD274 affects CD44
| 2
CD274 increases the amount of CD44.
| 1
CD274 increases the amount of CD44. 1 / 1
| 1
reach
"Mechanistically, CD44 activated PD-L1 transcription in part through its cleaved intracytoplasmic domain (ICD), which bound to a regulatory region of the PD-L1 locus containing a consensus CD44-ICD binding site."
CD274 binds CD44.
| 1
| 1
reach
"Splenic naive CD44 low CD8 + T cells isolated from WT and Cbl-b -/- mice were stimulated with anti-CD3 and anti-CD28 abs in the presence of plate bound PD-L1 Ig or control Ig."
CCL5 affects PTK2B
| 1 1
CCL5 phosphorylates PTK2B. 2 / 2
| 1 1
sparser
"Furthermore, CCL5 and CCL4 can induce the phosphorylation of Pyk2 in the human T cell line, DU6 [80] and Pyk2 activation by CCL4 has been shown to be dependent on CCR5 activation [81] ."
reach
"Furthermore, CCL5 and CCL4 can induce the phosphorylation of Pyk2 in the human T cell line, DU6 [80] and Pyk2 activation by CCL4 has been shown to be dependent on CCR5 activation [81]."
CANX affects AMFR
1 | 1
1 | 1
biogrid
No evidence text available
sparser
"Recruitment of LC3 to a Gp78/calnexin-positive ER domain that is closely associated with depolarized mitochondria supports a role for the ER in mitophagy."
ADAM17 affects ERBB3
| 1 1
ADAM17 phosphorylates ERBB3.
| 1
ADAM17 phosphorylates ERBB3. 1 / 1
| 1
rlimsp
"Furthermore, pre-treatments with metalloprotease inhibitor (TNF-α protease inhibitor-1) and specific knockdown of TNF-α-converting enzyme (TACE) with TACE siRNA prevented cigarette smoke-induced NRG1β release, ErbB3 phosphorylation and mucin production, suggesting the role of TACE in cigarette smoke-mediated NRG1β/ErbB3 signalling activation."
ADAM17 increases the amount of ERBB3.
| 1
ADAM17 increases the amount of ERBB3. 1 / 1
| 1
reach
"We further show that the induction of this anti-apoptotic signalling pathway is based on upregulated expression of HER3 ligands, their shedding by the metalloprotease ADAM17, and is dependent on the HER2 receptor."
ADAM10 affects TLR4
| 2
ADAM10 activates TLR4. 2 / 2
| 2
sparser
"IL-1ra, an anti-TLR4 antibody, and also the inhibition of JNK and NF-κB restored the decrease in synaptic functions in Tir8/Sigirr-deficient mice, demonstrating the key role of IL-1RI-and TLR4-activation by IL-1α and high mobility group box 1 (HMGB1), respectively, in this model."
sparser
"IL-1α and high mobility group box 1 (HMGB1), which activate IL-1R1 and TLR4, respectively, were proposed to play a central role in the phenotype observed and the expression levels of both molecules were increased in IL-1R8-deficient mice."
XPR1 affects RAB5C
1 |
1 |
biogrid
No evidence text available
VEGFA affects TRPC6
| 1
VEGFA activates TRPC6. 1 / 1
| 1
sparser
"We have shown, by whole-cell patch clamp of chinese hamster ovary cells overexpressing TRPC3 or TRPC6, that VEGF and OAG activate cation currents through heterologously expressed TRPC3 and TRPC6 channels [ xref ]."
VEGFA affects TRPC3
| 1
VEGFA activates TRPC3. 1 / 1
| 1
sparser
"We have shown, by whole-cell patch clamp of chinese hamster ovary cells overexpressing TRPC3 or TRPC6, that VEGF and OAG activate cation currents through heterologously expressed TRPC3 and TRPC6 channels [ xref ]."
VEGFA affects S1PR1
1 |
Transcriptionally active VEGFA increases the amount of S1PR1. 1 / 1
1 |
biopax:pid
No evidence text available
VEGFA affects RYR2
| 1
| 1
sparser
"Ryr2 and Cacna1g were strongly positively associated to VegfA , with the r values of 0.814, and 0.730, respectively; while both are negatively associated to that of VegfB , with correlation r values of −0.463 and −0.436."
VEGFA affects PTPN6
| 1
| 1
sparser
"To determine the association of the SHP-1/p-STAT3/VEGF-A cascade and tumor metastatic ability, we analyzed the protein expression of SHP-1, p-STAT3, and VEGF-A in several TNBC cell lines."
VEGFA affects PTK2B
| 1
VEGFA phosphorylates PTK2B. 1 / 1
| 1
sparser
"VEGFA induced Pyk2 tyrosine phosphorylation in a time-dependent manner with maximum effect at 10 min ( xref )."
VEGFA affects NR3C2
| 1
VEGFA inhibits NR3C2. 1 / 1
| 1
sparser
"It is interesting that, neither VEGF nor RCC supernatants were able to inhibit MLR if they had been added only during DC maturation/activation, rather than during the 7-day differentiation culture from monocytes."
VEGFA affects MMD
| 1
| 1
sparser
"Both the concentrations of VEGF-A (P = 0.25) and MMP-2 (P = 0.69) were not significantly associated with MMD after adjusting for AL."
VEGFA affects LYVE1
1 |
1 |
biogrid
No evidence text available
VEGFA affects KCNH2
| 1
| 1
sparser
"A similar approach might be applied to VEGF-A whose high expression is associated with poor prognosis [ xref ]: in fact, we showed that in colorectal [ xref ] and gastric [ xref ] cancers hERG1 expression is significantly associated with VEGF-A expression and the combined therapy with bevacizumab and hERG1 blockers impairs tumor growth in mouse models [ xref ]."
VEGFA affects IGF1R
| 1
| 1
sparser
"High levels of serum VEGF-A, IGF-I and IGF-IR were significantly associated with the presence of lymph nodes metastasis (P=0.007, P=0.007 and P=0.03, respectively) and incidence of mortality (P<0.001, P=0.009 and P=0.03, respectively)."
VEGFA affects AGTR1
| 1
| 1
reach
"In this study we evaluated the possible association between VEGFA, eNOS, AGT, AGTR1, ACE, and HMOX-1 gene polymorphisms and the development of the most frequent prematurity complications, namely RDS requiring MV, BPD, IVH and ROP in a large population of preterm infants."
VDAC2 affects RAB5C
1 |
1 |
biogrid
No evidence text available
VDAC2 affects MME
1 |
1 |
biogrid
No evidence text available
VDAC1 affects SLC3A2
1 |
1 |
biogrid
No evidence text available
VDAC1 affects RAB5C
1 |
1 |
biogrid
No evidence text available
VDAC1 affects MME
| 1
| 1
sparser
"The finding that imported polypeptides bind to a specific region of the VDAC protein implicates this channel in the process by which precursor proteins are recognized at and translocated across the mitochondrial outer membrane."
VDAC1 affects CANX
1 |
1 |
biogrid
No evidence text available
VDAC1 affects BSG
1 |
1 |
biogrid
No evidence text available
VCAN affects EBP
| 1
VCAN inhibits EBP. 1 / 1
| 1
sparser
"Efficient repair by re-synthesis of elastic fibers in alveoli of COPD patients may be hampered by the inhibition of EBP by versican, particularly by its CS/DS chains ( xref )."
VAC14 affects CD274
1 |
1 |
biogrid
No evidence text available
VAC14 affects BSG
1 |
1 |
biogrid
No evidence text available
TSPO affects TNF
| 1
| 1
sparser
"The decrease in TSPO mRNA was associated with a decrease in TNFα mRNA as well as a decrease in CXCL10."
1 |
1 |
hprd
No evidence text available
TRPV1 affects MME
| 1
| 1
sparser
"Molecular docking made possible establishing the spatial structure of the complexes, the nature of the polypeptides binding with TRPV1, as well as functionally important structural elements involved in the complex formation."
TRPV1 affects IL10
| 1
| 1
sparser
"DPV576-induced TRPV1 expression was associated with significant inhibition in the secretion of IFN-γ and increase in IL-10."
TRPM7 affects TGFB1
| 1
| 1
sparser
"Possible TGF-β1 and TRPM7 interactions were examined using RT-PCR and western blotting analyses with ASMCs."
TRPM4 affects TNF
| 1
| 1
sparser
"Coexpression of Sur1 and Trpm4 in necrotic endothelial cells was also associated with vasogenic edema indicated by upregulated perivascular tumor necrosis factor, extravasation of serum immunoglobulin G, and associated inflammation."
TRPC6 affects TGFB1
| 1
| 1
reach
"However, it has little been known about the functional association between TGFbeta1 and TRPC6 in vascular smooth muscle cells (VSMCs)."
TRPC1 affects MME
| 1
| 1
sparser
"TRPC1 forms heterotetramers with other TRPC polypeptides resulting in cation channels which are non-selective."
TRAM1 affects HLA-A
1 |
1 |
biogrid
No evidence text available
TNFSF9 affects SCN3B
1 |
1 |
biogrid
No evidence text available
TNFSF12 affects TNFRSF11A
| 1
sparser
"Two more signaling pathways, TWEAK and RANKL-RANK signaling pathways, which are associated with the production of pro-inflammatory cytokines and bone development were also enriched in OA chondrocytes [ xref , xref ]."
TNFRSF1A affects MIF
| 1
| 1
sparser
"In an analysis of multiple markers simultaneously, increased IL-8 [AHR, 0.80, 95% confidence interval (95% CI) 0.70-0.91, P < 0.001] and TNFR-I (AHR, 0.63, 95% CI 0.50-0.79, P < 0.001) were associated with slower recovery, and increased IL-8 (AHR, 1.26, 95% CI 1.14-1.39, P < 0.001); MIF (AHR, 1.18, 95% CI 1.08-1.28, P < 0.001) and TNFR-I (AHR, 1.26, 95% CI 1.02-1.56, P < 0.03) were associated with mortality."
TNFRSF1A affects IL1B
| 1
| 1
reach
"Previous studies reported that IL1beta and TNFalpha exert toxic effects by binding to their cognate receptors, IL1-R1 and TNFR1, respectively, triggering downstream signaling pathways that activate transcription factors, such as NFkappaB or AP1 which in turn lead to the production of NO and ROS."
TNFRSF1A affects IL10
| 1
| 1
reach
"IFN alpha can impact on dendritic cell differentiation (Luft et al., 1998; McRae et al., 2000) and controls the expression of various pro inflammatory cytokines such as IL-8 or IL-18 (Aman et al., 1993; Kaser et al., 2002) and induces several anti-inflammatory mediators such as IL-1 receptor antagonist (IL-1Ra), soluble TNF receptor p55, IL-10 and IL-18 binding protein (Aman et al., 1996; Tilg et al., 1993, 1995)."
TNFRSF1A affects CD63
| 1
| 1
reach
"The MV preparations consisted of phospholipid bound vesicles containing the serum proteins albumin, fetuin-A, and apolipoprotein A1; the mineralization associated enzyme alkaline phosphatase; and the exosome proteins TNFR1 and CD63."
TNFRSF1A affects ADAM8
| 1
sparser
"ADAM8 activity was also associated with TNFR1 release, and ADAM8 cleavage of TNFR1 has been previously observed in the context of neurodegeneration xref ."
TNFRSF11A affects CD274
| 1
sparser
"The anti-RANKL/PD-1 BsAb retained binding to both RANKL and PD-1 and blocked the interaction with respective counter-structures RANK and PD-L1."
TNFRSF11A affects BST2
| 1
sparser
"For the RANK expression analysis, a concordant expression pattern was observed using mAbs in IHC on a variety of positive and negative controls compared with expression analysis tested using other methods, such as flow cytometry using mAbs which bind RANK via distinct epitopes and RT-PCR."
TNF affects TGFBR1
| 1
| 1
sparser
"Although the data obtained to date are preliminary, they confirm that the binding of TNFa to its type I receptor is associated with endothelial cell activation and hypotension."
TNF affects SORL1
| 1
| 1
sparser
"Here we showed that Ldlr gene deficiency was associated with an impaired overexpression of both IL-6 and TNFα during the early phases of liver regeneration after PH."
TNF affects RTN4R
| 1
| 1
sparser
"In fact, tumor vessels, but not other CD13-expressing tissues, express a functionally active form of CD13 that binds NGR-TNF [ xref ]."
TNF affects ROBO2
| 1
| 1
reach
"Slit processing generates an N-terminal fragment (SlitN) that binds to Robo1 and Robo2 receptors and mediates Slit repulsive activity, as well as a C-terminal fragment (SlitC) with an unknown receptor and bioactivity."
TNF affects PTGER3
| 1
| 1
sparser
"These effects were associated with an increase in levels of PGE(2) and TNF-α."
TNF affects PDGFRA
| 1
TNF phosphorylates PDGFRA. 1 / 1
| 1
sparser
"TNF-α stimulated c-Src, PDGFR, and EGFR phosphorylation, which were reduced by PP1."
TNF affects PAQR3
| 1
TNF inhibits PAQR3. 1 / 1
| 1
sparser
"The possibility that TNFα is a more general antagonist of human PAQRs is supported by data shown in xref , which demonstrate TNFα-dependent inhibition of basal signaling of PAQR3, PAQR4, mPRγ, mPRβ and PAQR11."
TNF affects OPRM1
1 |
Transcriptionally active TNF increases the amount of OPRM1. 1 / 1
1 |
biopax:ctd
No evidence text available
TNF affects NTRK3
| 1
| 1
reach
"This assay showed that TrkC interacted with the N-terminal fragment containing the RING motif and C 2 H 2 zinc fingers of NTRAP (ZFS), but not with its C-terminal half (NTRAPc; XREF_FIG, A and B)."
TNF affects NALCN
| 1
| 1
sparser
"However, clinical use of non-selective TNF inhibitors is associated with an increased risk of infections."
TNF affects MMD
| 1
TNF inhibits MMD. 1 / 1
| 1
sparser
"The possibility that TNFα is a more general antagonist of human PAQRs is supported by data shown in xref , which demonstrate TNFα-dependent inhibition of basal signaling of PAQR3, PAQR4, mPRγ, mPRβ and PAQR11."
TNF affects LY96
| 1
| 1
sparser
"Furthermore, a genetically determined higher activity of LY96 (−1625 C>G) and TNFA (−308 G>A) was associated with reduced risk of UC."
TNF affects LGR5
| 1
| 1
sparser
"Results : Pten loss in Lgr5 + HFSCs promoted SCC formation, which was attenuated in TNF -/- mice."
TNF affects KCNK2
| 1
| 1
reach
"This binding was selective since NT was unable to displace the binding of 125 I-spadin and the N-terminal fragment Gln1-Arg16 bound to TREK-1 with a very low affinity (1 microM) close to that reported with NTSR3 and sortilin (XREF_FIG) XREF_BIBR."
TNF affects KCNA3
| 1
TNF activates KCNA3. 1 / 1
| 1
sparser
"Tumor necrosis factor-alpha-induced activation of macrophages increased Kv1.3 with no changes in Kv."
TNF affects ITGB3
1 |
Transcriptionally active TNF increases the amount of ITGB3. 1 / 1
1 |
biopax:ctd
No evidence text available
TNF affects IL17RC
| 1
| 1
sparser
"It has been shown that the full-length IL-17RC formed homodimer and inhibited TNFα-induced apoptosis in prostate cancer cells [ xref ]."
TNF affects IL10RB
| 1
| 1
sparser
"Furthermore, LGG -dependent increases in IL-10R2 were associated with reductions in TNF-α, MIP-2 and disease severity in a murine model of intestinal injury in the immature colon."
TNF affects GRIA1
| 1
TNF phosphorylates GRIA1 on S863. 1 / 1
| 1
reach
"Carrageenan induces TNF dependent phosphorylation of GluR1 at ser 845."
TNF affects GAL
| 1
TNF binds GAL. 1 / 1
| 1
sparser
"In contrast, Pioglitazone-induced PPARγ activation exacerbated D-galactosamine (GalN)/lipopolysaccharide (LPS) hepatitis associated with an increased production of TNFα by Kupffer cells and increased sensitivity of hepatocytes towards TNFα after in vivo Pioglitazone administration."
TNF affects FGFR1
| 1
| 1
sparser
"Here, we show that FGFR-1 can interact with the TNF receptor superfamily member fibroblast growth factor-inducible molecule 14 (Fn14) resulting in cardiomyocyte cell cycle reentry."
TNF affects F2R
| 1
TNF binds F2R. 1 / 1
| 1
sparser
"Results showed that dsVEGF-706 transfection restored the endothelial-like tube formation of HTR-8/SVneo cell that was inhibited by TNF-α."
TNF affects CUL5
| 1
TNF increases the amount of CUL5. 1 / 1
| 1
sparser
"Here, we found that TNFα-induced VACM-1 expression was reduced by an NF-κB inhibitor Bay11-7082 ( xref B,C)."
TNF affects CRY1
| 1
TNF inhibits CRY1. 1 / 1
| 1
sparser
"Additionally, exogenous TNF-α inhibited c-cbl protein level vice versa."
TNF affects CELSR2
1 |
1 |
biogrid
No evidence text available
TNF affects CACNA1B
| 1
| 1
sparser
"Inhibition of N-type VGCCs following TNFalpha incubation was associated with a decrease in CaV2.2 mRNA and reduced membrane localization of CaV2.2 immunoreactivity."
TNF affects ATP6AP2
| 1
| 1
sparser
"In summary, renal ischemia is associated with increased expression of PRR, NF-κB, the inflammatory cytokine TNF-α, and UACR."
TMEM63B affects LGALS3BP
1 |
biogrid
No evidence text available
TLR4 affects IL1RN
| 1
| 1
sparser
"Prior research indicates an interaction between IL-1ra and TLR4 in a mouse model of arthritis, as TLR4 stimulation enhances arthritis severity in IL-1ra deficient mice whereas TLR4 deficiency is protective ( xref )."
TLR4 affects IL1A
| 1
| 1
reach
"The four SNPs that had significant single SNP associations with either IL-1alpha (IL-1RAP rs6444435) or IL-1beta (IL-1R2 - rs4851527 and rs4851531, IL-1RAP - rs6765375) in AA were tested for interaction effects with the two SNPs in TLR4 (rs1554973 and rs7856729) that were associated with IL-1alpha and IL-1beta in European Americans in a previous study."
TLR4 affects BSG
| 1
| 1
sparser
"Tasquinimod is a small molecule with a quinoline-3-carboxamide structure that binds to S100A9 and blocks its interaction with TLR4, RAGE and EMMPRIN expressed on different subsets of myeloid cells. xref Tasquinimod has been shown to exert immunomodulatory, anti-angiogenic and anti-metastatic properties in preclinical studies. xref "
TLR4 affects ADAM17
| 1
| 1
sparser
"Percent body fat was directly associated with skeletal muscle TLR4 (r = 0.52, p < 0.01) and TACE (r = 0.50, p < 0.01), whereas fasting blood glucose was directly associated with TACE and sTNFα."
TIMP1 affects TRPC5
| 1
TIMP1 inhibits TRPC5. 1 / 1
| 1
sparser
"The data suggest that the dietary ω-3 fatty acids lino., DHA and EPA inhibit the TRPC5 homomeric and TRPC1-TRPC5 heteromeric channels."
TIMP1 affects KIT
| 1
TIMP1 inhibits KIT. 1 / 1
| 1
sparser
"In addition, TIMP-1 inhibited c-Kit shedding in CRC cells grown in the presence of exogenous TIMP-1."
TIMP1 affects ITGB1
| 1
| 1
reach
"In human melanoma cell lines, TIMP interacts with ITGB1 and CD63 and assists melanomagenesis and resistance to the cell death program."
TIMP1 affects EFEMP1
| 1
| 1
sparser
"Interaction between fibulin-3 and tissue inhibitor of metalloproteinases-3 (TIMP-3) was reported in vitro and the C-terminal fibulin module was shown to be responsible for this interaction ( xref )."
THBS1 affects S1PR1
| 1
| 1
sparser
"We then performed a ChIP assay to elucidate whether the interaction of mutant p53 with Rad21 affects its binding to the transcription factor-binding site of the S1PR1 and THBS1 genes."
THBS1 affects NOTCH1
| 1
| 1
reach
"TSP1 binds Notch1 by complexing with Jagged1 [XREF_BIBR] and/or Contactin [XREF_BIBR] to inhibit NPC differentiation into oligodendrocytes, thereby promoting their differentiation into nerve cells."
THBS1 affects IL6ST
| 1
| 1
sparser
"Among other seven genes, gene FCGR2A is associated with SLE, gene HSPA1A is involved in antigen-processing, genes THBS1 and IL6ST are associated with cytokine-cytokine receptor induced signaling, and genes GADD45A, THBS1, and CHEK1 are associated with p53 signaling pathway."
THBS1 affects CACNA2D1
| 1
reach
"Immunoprecipitation with anti-FLAG antibodies revealed that the SD2-alpha2delta-1 interaction was diminished in the presence of GBP (XREF_FIG) suggesting that GBP blocks TSP induced synapse formation by interfering with the interaction between alpha2delta-1 and TSP."
TGFBR3 affects CCL5
| 1
| 1
sparser
"As it has been previously reported that K562 cells express betaglycan and syndecan-3 , these data further rule out RANTES binding to betaglycan."
TGFBR1 affects ADAM17
| 1
| 1
reach
"As TACE was shown recently to associate with the ectopically expressed TbetaRI in cells expressing HER2 XREF_BIBR, we investigated by co-immunofluorescence if endogenous TbetaRI associated with TACE in PC-3U cells."
TGFB1 affects VDAC1
1 |
Transcriptionally active TGFB1 decreases the amount of VDAC1. 1 / 1
1 |
biopax:ctd
No evidence text available
TGFB1 affects PLXNC1
| 1
TGFB1 activates PLXNC1. 1 / 1
| 1
sparser
"TGFβ1 activates semaphorin 7A and its receptors plexin C1 and β1 integrin subunit and induces proliferation of fibroblasts, lung fibrosis and remodeling in mice."
TGFB1 affects NID1
| 1
TGFB1 increases the amount of NID1. 1 / 1
| 1
reach
"As transforming growth factor (TGF)-beta1 seems to be the most effective mediator in the stimulation of matrix protein synthesis, we were interested in the modulation of basement membrane proteins collagen type IV, laminin, and entactin expression by TGF-beta1 in liver sinusoidal endothelial cells (SECs), especially since a stimulation of the synthesis of collagen type IV but not of entactin and laminin by TGF-beta1 has been demonstrated in a fibrosarcoma cell line."
TGFB1 affects MCOLN1
| 1
| 1
sparser
"The stress response-implicated TRPML1 interactors are particularly interesting in the light of predicted interactions between TRPML1 and TGF-β1 regulators."
TGFB1 affects LYVE1
| 1
| 1
sparser
"TGFβ1 can bind CD44 hyaluronic acid receptor and regulate several of the chemokines such as MCP1 (Ccl2) and Haptoglobin (Hp) mRNA."
TGFB1 affects KCNH2
1 |
Transcriptionally active TGFB1 decreases the amount of KCNH2. 1 / 1
1 |
biopax:ctd
No evidence text available
TGFB1 affects GRIA3
| 1
| 1
sparser
"We found that GRIA3 is a target of miR-330-3p and that miR-330-3p stimulates EMT progress by mediating GRIA3-TGF-β1 interaction."
TGFB1 affects F3
| 1
TGFB1 phosphorylates F3. 1 / 1
| 1
sparser
"To add further complication, TAK-1 TGF-p activated kinase 1 there are circumstances in which downstream effects of TCF T-cell factor Wnt signalling can be triggered without Wnts TGF-f3 transforming growth factor-p vegetal 1 [25-27,2829] and others in which certain Wnts can signal w WIF-1 Wnt-inhibitory factor-l without apparently involving some of the core components of the canonical signalling pathway [30,31,32."
TGFB1 affects F2RL2
| 1
TGFB1 activates F2RL2. 1 / 1
| 1
sparser
"To verify whether changing the ratio of Smad2 and Smad3 would similarly affect transcriptional activation of pAR3-luc and pCAGA-luc by TGF-β1 we depeleted PANC-1 cells of the two R-Smads by siRNA transfection prior to TGF-β1 stimulation of reporter gene activity."
TGFB1 affects EPHB6
| 1
| 1
sparser
"Interactions with EphB6, TGFβ1, and Insulin suggest the possible contribution of these crucial signaling factors in mutant p53 oncogenic gain-of-functions."
TGFB1 affects EFEMP1
| 1
| 1
sparser
"Compared with soluble TβRIII, which, as expected, efficiently bound TGF-β xref , fibulin-3 did not directly bind TGF-β1 ( xref )."
TGFB1 affects EDNRA
| 1
| 1
sparser
"The observed association of the genetic modifiers TGF-β1 and EDNRA in the penetrance of CAVD further supports their involvement in genesis of the vas deferens."
TGFB1 affects DDR1
| 1
| 1
sparser
"This interaction between DDR1 and TGFβ1-Smad3 signaling can explain, at least partly, the decreased progression of renal fibrosis after the inhibition of DDR1 expression in the antisense groups."
TGFB1 affects CRY1
| 1
| 1
sparser
"From the mRNA levels of TGF-β1, it may be concluded that reduction in PHB concomitantly promotes the formation of TGF-β1 and vice versa ."
TGFB1 affects BMPR1B
| 1
| 1
sparser
"Other studies show that BMPR-IB formation promoted by TGF-β1 enhances BMP-2-induced osteogenic functions in bone marrow stromal cells in vitro [ xref ]."
TGFB1 affects ACVR1
| 1
| 1
reach
"BMP7 binds specifically to ALK3 and ALK6 receptors, whereas TGFbeta1 binds to ALK2 and ALK5 receptors XREF_BIBR, XREF_BIBR, XREF_BIBR."
SSTR2 affects C3
| 1
| 1
sparser
"It showed better binding affinity and more interaction with SSTR2 (Figure xref ), as it specifically interacts with SSTR2 at ASP 39 , VAL 106 , GLY 182 , ASN 186 , GLY 187 , TRP 188 and SER 285 by its LYS, ASN, TRP and CYS residues."
SPP1 affects LYVE1
| 1
| 1
sparser
"CD44 is a hyaluronic acid receptor that interacts with ligands such as collagens, osteopontin and matrix metalloproteases ( xref , xref )."
SPP1 affects KCNQ2
| 1
SPP1 inhibits KCNQ2. 1 / 1
| 1
sparser
"We were especially interested in studying patients with LOTS, since they show intrasaccadic decelerations and saccadic hypometria, which might reflect either premature inhibition of ipsilateral EBN by OPN or early discharge of contralateral IBN due to cFN dysfunction."
SPP1 affects KCNJ10
| 1
| 1
sparser
"We go on to discuss other potential biomarkers from MS serum and cerebrospinal fluid including Markers of neurodegeneration including neurofilament and GFAP, the monocyte macrophage marker CD163, the glial activation marker YKL-40, the B cell chemoattractant CXCL13, miRNA and mRNA, myelin reactive t cells, Kir4.1 antibodies, osteopontin, and microbiome associated lipopeptides."
SPP1 affects EFEMP1
| 1
| 1
sparser
"High concentrations of other soluble glycoproteins, such as osteopontin, fibulin-3 and vascular endothelial growth factor are independently associated with poor prognosis at baseline, although further research is required to ascertain any role outside of clinical trials."
SPP1 affects CACNG4
1 |
1 |
biogrid
No evidence text available
SORT1 affects MME
| 1
| 1
sparser
"In addition, sortilin also binds to other polypeptides such as neurotensin, sphingolipid activator protein and lipoprotein lipase and has been suggested to be involved in proper intracellular trafficking of these polypeptides [ xref – xref ]."
SORT1 affects IL1RN
| 1
| 1
reach
"Using chemical cross linking and the yeast two-hybrid system, we show that sortilin interacts with Glut4 and IRAP in the vesicular lumen."
SORT1 affects IL10
| 1
| 1
reach
"Our SPR analysis revealed that in addition to IL-6 and IFN-gamma, sortilin interacted with IFN-alpha, IL-10, IL-12 and IL-17A (XREF_FIG) but not with IL-1beta (XREF_FIG), suggesting that sortilin is not involved in IL-1beta secretion."
SLC3A2 affects NTRK1
1 |
1 |
biogrid
No evidence text available
SLC3A2 affects LGR4
1 |
1 |
biogrid
No evidence text available
SLC3A2 affects ITGB1
1 |
1 |
hprd
No evidence text available
SLC20A1 affects RNF149
1 |
biogrid
No evidence text available
SLC20A1 affects LRP10
1 |
1 |
biogrid
No evidence text available
SIRPA affects IGF1R
| 1
SIRPA dephosphorylates IGF1R on tyrosine. 1 / 1
| 1
reach
"Regulation of insulin like growth factor I receptor dephosphorylation by SHPS-1 and the tyrosine phosphatase SHP-2."
SIGMAR1 affects ATP6AP1
| 1
sparser
"Yeast two hybrid analysis showed that the principle sigma factor RpoD1 interacts with Orf7.5."
SEMA4D affects CD274
| 1
| 1
sparser
"Over-expressions of PD-L1, VEGF and SEMA4D are associated with more malignant clinicopathologic characteristics of CREOC Patients."
SCN5A affects LDLR
| 1
| 1
sparser
"These variations in the lipoprotein concentrations were associated with inverse changes in the hepatic protein levels of the LDL receptor (+118%) and HB2 (-46%)."
SCARB2 affects GRN
| 1
| 1
sparser
"PGRN demonstrated dose-dependent binding and saturation to liquid-phase GCase ( xref c), whereas no direct interaction between PGRN and LIMP2 was detected ( xref c)."
SCARB2 affects CTSD
| 1
| 1
sparser
"The dispersed lysosomes associated with cathepsin D and LIMPII were not colocalized with early endosomes, and these vesicles were not inaccessible to the endocytosed anti-transferrin receptor antibody."
SCARB1 affects IL15
| 1
| 1
sparser
"We investigated the association of IL15 rs10833 or SCARB1 rs10846744 polymorphisms with treatment responses in patients with chronic HCV (CHC)."
S1PR2 affects ACP2
1 |
1 |
biogrid
No evidence text available
S1PR1 affects ACP2
1 |
1 |
biogrid
No evidence text available
RHO affects CANX
| 1
| 1
sparser
"Furthermore, these results support the notion that calnexin, NinaA and XPORT sequentially interact with Rh1 during its biosynthesis in a step-wise fashion, as opposed to functioning as components of a macromolecular chaperone complex."
RAB5C affects NTRK1
1 |
1 |
biogrid
No evidence text available
RAB5C affects INSR
| 1
| 1
reach
"Of further interest, the candidate Rab5c (XREF_TABLE) also associates with the IR and this association increases in an insulin regulated (XREF_FIG)."
RAB5C affects IGF2R
1 |
1 |
biogrid
No evidence text available
RAB5C affects CLCN7
1 |
1 |
biogrid
No evidence text available
PTPRO affects HLA-A
1 |
1 |
biogrid
No evidence text available
PTPRO affects CANX
1 |
1 |
biogrid
No evidence text available
PTPRO affects ATP6AP1
1 |
1 |
biogrid
No evidence text available
PTPRK affects GLG1
1 |
1 |
biogrid
No evidence text available
PTPRF affects IL1B
| 1
| 1
sparser
"As shown in xref , LAR was positively associated with IL-1β (r=0.41, p<0.001)."
PTPRF affects CANX
| 1
| 1
sparser
"Indeed, a primary interaction with carbohy- drate appears not to be obligatory, as a non-glycosylated mutant of H-2Ld can interact with calnexin41, and simi- lar observations have been made on other proteins3 including MHC class II molecules42."
PTPRE affects CANX
1 |
1 |
biogrid
No evidence text available
PTPRA affects CANX
1 |
1 |
biogrid
No evidence text available
PTPN6 affects CD84
| 1
| 1
sparser
"Nevertheless, studies involving yeast in a phospho-dependent condition failed to show any direct interaction between CD84 and SHP-1 or Csk ( xref )."
PTK2B affects LDLR
| 1
| 1
sparser
"Previous work from our group showed that hypoxia upregulates the phosphorylated form of the Ca(2+)-dependent nonreceptor protein tyrosine kinase (PTK) proline-rich tyrosine kinase 2 (pPyk2) protein levels in a low-density lipoprotein receptor-related protein (LRP1)-dependent manner."
PTK2B affects IL15
| 1
| 1
sparser
"During IL-15-mediated NK cell priming, SOCS2 interacted with phosphorylated proline-rich tyrosine kinase 2 (Pyk2) at tyrosine 402 (p-Pyk2(Tyr402)) and induced the proteasome-mediated degradation of p-Pyk2(Tyr402) via ubiquitination."
PTK2B affects ADAM8
| 1
| 1
reach
"These results demonstrate that ADAM8 and alpha 9 beta 1 interacts with Pyk2 to enhance signaling through paxillin."
PTGIR affects CANX
1 |
1 |
biogrid
No evidence text available
PTGER4 affects IL1A
| 1
| 1
reach
"Inhibition of PGE2 binding by IL-1 alpha did not involve changes in either protein phosphorylation or intracellular cyclic AMP levels."
PTGER4 affects IL10
| 1
| 1
reach
"These results identify a regulatory interaction between IL-10 and PGE2, dysregulation of which may drive aberrant Mphi activation and impaired host defense contributing to IBD pathogenesis."
PTCH1 affects MME
| 1
| 1
sparser
"Here we report the structure of FGF-7 that has been solved to 3.1 A resolution by molecular replacement with the structure of a dual function chimera of FGF-7 and FGF-1 (FGF-7/1) which was resolved to 2.3 A. Comparison of the FGF-7 structure to that of FGF-1 and FGF-2 revealed the strongly conserved Calpha backbone among the three FGF polypeptides and the surface hydrophobic patch that forms the primary receptor-binding domain."
PTCH1 affects LDLR
| 1
| 1
sparser
"This has been a challenge for small molecules by conventional means, as it requires the disruption of the small, flat interaction between PCSK9 and the LDLR that represents the primary contact patch at neutral pH."
PTCH1 affects CD274
| 1
| 1
sparser
"A fourth contact that differs by a single atom stabilizes this surface into either a shallow patch that interacts with Ala121 in PD-L1, or a deep cavity that buries Trp110 in PD-L2."
PTCH1 affects ADAM17
1 |
1 |
biogrid
No evidence text available
PRLR affects IL10
| 1
| 1
sparser
"In this work, IL-10 was neither released by untreated nor LPS-activated monocytes, but, in contrast, the binding of PRLr with a pAb anti-PRLr elicited IL-10 in activated monocytes after 48 h."
PMEPA1 affects ANTXR1
| 1
| 1
sparser
"Subsequent studies have defined that PMEPA1 inhibits TGF-β receptor 1 meditated signaling through a negative feedback loop by sequestering R-Smads [ xref ]."
PLXNB2 affects HLA-E
1 |
1 |
biogrid
No evidence text available
PLXNA4 affects DCT
1 |
1 |
biogrid
No evidence text available
PLXNA3 affects NAMPT
| 1
| 1
sparser
"Sex was significantly associated with visfatin concentrations ( P  = 0·039) in the entire cohort."
PLXNA3 affects LDLR
| 1
| 1
sparser
"Interaction between Sex and LDLR rs688 Polymorphism on Hyperlipidemia among Taiwan Biobank Adult Participants."
PLBD1 affects IL31RA
1 |
1 |
biogrid
No evidence text available
PLAUR affects CD68
| 1
| 1
sparser
"In xref and xref , the score 1–3 of CD68 is positively associated with higher expression of Ki67 or uPAR, respectively."
PKD1 affects MME
| 1
| 1
sparser
"Between the HF and HF-NEP groups, the variance explained by PC1 was primarily associated with Akkermansia ."
PKD1 affects IL10
| 1
| 1
sparser
"Furthermore, on gd14, we detected lower frequencies and cell numbers of peritoneal IL-10- and PC1-coexpressing B1a B cells as compared with the normal pregnancy situation indicating that a lack of this specific B1a B cell subset coexpressing IL-10 and PC1 is associated with fetal rejection."
PEAR1 affects HDGF
| 1
| 1
sparser
"PEAR1 interactions with HDGF and PRCC might modulate their cancer-related role and open up for future research of PEAR1 in the tumour biology field."
P2RX2 affects CANX
1 |
1 |
biogrid
No evidence text available
OSM affects PTK2B
| 1
OSM activates PTK2B. 1 / 1
| 1
sparser
"These results suggest that, in marrow endothelium, activation of RAFTK by VEGF, VRP, OSM, and bFGF represents a new element in the signal transduction pathways used by these growth factors and likely acts to coordinate signaling from their surface receptors to the cytoskeleton, thereby modulating cell growth and function."
NTSR2 affects GRN
| 1
| 1
sparser
"Two other NT binding sites are G protein-coupled receptors, but NTR1 and NTR2 do not bind PGRN ( xref , xref )."
NTRK1 affects NAMPT
1 |
1 |
biogrid
No evidence text available
NTRK1 affects LMAN2
1 |
1 |
biogrid
No evidence text available
NTRK1 affects LGALS3BP
1 |
biogrid
No evidence text available
NTRK1 affects HLA-A
1 |
1 |
biogrid
No evidence text available
NTRK1 affects HDGF
1 |
1 |
biogrid
No evidence text available
NTRK1 affects GRN
1 |
1 |
biogrid
No evidence text available
NTRK1 affects GLG1
1 |
1 |
biogrid
No evidence text available
NTRK1 affects ENO1
1 |
1 |
biogrid
No evidence text available
NTRK1 affects CPD
1 |
1 |
biogrid
No evidence text available
NTRK1 affects CANX
1 |
1 |
biogrid
No evidence text available
NTRK1 affects BSG
1 |
1 |
biogrid
No evidence text available
NTRK1 affects ALCAM
1 |
1 |
biogrid
No evidence text available
NRP1 affects HDGF
| 1
| 1
trips
"Interactions of multiple heparin binding growth factors with neuropilin-1 and potentiation of the activity of fibroblast growth factor-2."
NR3C2 affects IL1B
| 1
| 1
sparser
"Molecular sieve chromatography of TAT-IC-activated serum confirmed that 125I-IL-1 beta became bound to high Mr serum proteins."
NPY2R affects DMXL2
1 |
1 |
biogrid
No evidence text available
NOTCH1 affects BSG
| 1
| 1
sparser
"By analyzing functions of genes in altered chromosomes, we further confirmed that the levels of BSG and NOTCH1 , which are associated with the occurrence and development of leukemia, were increased in these workers."
NLGN3 affects CTSD
1 |
1 |
biogrid
No evidence text available
NID1 affects LGALS3BP
1 |
1 |
hprd
No evidence text available
NID1 affects LDLR
| 1
| 1
sparser
"Based on the current results and on domain-domain interactions revealed by recent ultrastructural investigations of the LDL receptor, nidogen, and laminin (Rudenko, G., Henry, L., Henderson, K., Ichtchenko, K., Brown, M. S., Goldstein, J. L., and Deisenhofer, J. (2002) Science 298, 2353-2358 and Takagi, J., Yang, Y., Liu, J. H., Wang, J. H., and Springer, T. A. (2003) Nature 424, 969-974), we propose a novel role of perlecan in mediating plasma-to-oocyte surface transport of VLDL particles."
NEO1 affects ADAM17
| 1
| 1
reach
"Okamura and colleagues showed that ADAM17 and TACE can bind to and cleave neogenin, regulating the behavior of rat cortical neurons in response to RGM [XREF_BIBR]."
NAMPT affects LY96
| 1
| 1
reach
"Thus, it is unlikely that NAMPT and PBEF directly interacts with either LPS or MD-2 physically at this region."
NAMPT affects CUL5
1 |
1 |
biogrid
No evidence text available
NAMPT affects ADORA2A
1 |
1 |
biogrid
No evidence text available
NALCN affects BST2
| 1
| 1
sparser
"To assess the cellular function of the P2X7 receptor in patients with active disease and healthy controls, we determined the non-selective pore formation induced by ATP by flow cytometry."
MME affects LRP1
| 1
| 1
sparser
"Immunohistochemical experiments revealed that the ApoE4-driven accumulation of Aβ in CA1 hippocampal neurons following inhibition of the Aβ-degrading enzyme neprilysin is associated with the up-regulation of Lrp1 in these neurons but that no changes occurred in the levels of the corresponding Apoer2 receptor."
MME affects KCNA1
| 1
MME inhibits KCNA1. 1 / 1
| 1
sparser
"Although less potent than α-DTX, ‘DaE’ polypeptides inhibit Kv1.1 channels with an IC 50 value in the range of 300 nM."
MME affects JMJD6
| 1
| 1
sparser
"Wolf, M.; Sahyoun, S. Protein kinase C and phosphatidylserine bind to Mr 1 I0,000/115,000 polypeptides enriched in cytoskeletal and postsynaptic density preparations."
MME affects INSR
| 1
| 1
sparser
"In the course of investigation with over 30 different cell types in our laboratory, only the characteristic polypeptides associated with the insulin receptor and the type I and II IGF receptor structures have been consistently detected and specifically labeled by affinity crosslinking methodology."
MME affects GHR
| 1
GHR binds MME. 1 / 1
| 1
sparser
"Interactions between the extracellular subdomain 2 of adjacent GHR polypeptides result in a 500-A2 contact interface, which has previously been suggested to stabilize the GH-(GHR)2 complex."
MME affects DNER
| 1
| 1
sparser
"Through the bromodomains, BET proteins specifically bind to polypeptides carrying acetylated lysine residues, including acetyl-histones [ xref ]."
MME affects CXCR4
| 1
| 1
sparser
"The selective binding of two synthetic antagonistic polypeptides TN140 and TN14003 to CXCR4 has been demonstrated in different cancer cell types and hence can be a promising moiety to target HIV infected cells xref , xref ."
MIF affects PTGER3
| 1
MIF activates PTGER3. 1 / 1
| 1
sparser
"Finally, MIF-induced COX 2-PGE(2) activation could be blocked by selective inhibitors of p44/p42 and p38 MAPKs."
MIF affects CD4
| 1
CD4 binds MIF. 1 / 1
| 1
sparser
"This corresponded with increased parasite burden in mice infected with wildtype versus mif-/- L. major late in infection, suggesting a reduction in the formation of long-lived effector CD4 T cells in the presence of Leishmania MIF [ xref ]."
M6PR affects ENO1
1 |
1 |
biogrid
No evidence text available
M6PR affects ACP2
1 |
1 |
biogrid
No evidence text available
LY75 affects CD274
| 1
| 1
sparser
"In DKO* mice, LCs within the epidermis as well as in lymph nodes exhibited higher levels of CD205, PD-L1, and CD86, which have been associated with DC-mediated generation of regulatory T cells (Bonifaz et al , xref ), peripheral T-cell tolerance (Salomon et al , xref ), and protection from spontaneous autoimmunity (Probst et al , xref )."
LRP10 affects IFNGR1
1 |
1 |
biogrid
No evidence text available
LRP10 affects CHRM3
1 |
1 |
biogrid
No evidence text available
LRP1 affects ITGAM
| 1
| 1
sparser
"Using purified proteins, LRP indeed associated with the alphaMbeta2 complex and the alphaM and alphaL I-domains (K(d, app) approximately 0.5 microM)."
LRP1 affects IL1RN
| 1
| 1
sparser
"Golgin-160 likely acts together with p115, another Golgi matrix protein that binds IRAP and LRP1, to sequester GSVs within unstimulated cells [ xref , xref , xref ]."
LRP1 affects IL1B
| 1
| 1
sparser
"IL-1RtI knockout mice were resistant to the APR induced by peripherally injected murine IL-1 beta, suggesting that it is not the interaction of endogenous IL-1 beta with IL-1RtII that induces an APR to LPS in these mice."
LMAN2 affects CACNA2D1
1 |
biogrid
No evidence text available
LIFR affects IL1RN
| 1
| 1
sparser
"Indeed, the latter condition is not associated with changes in serum LIFR or IL-1RA levels, but with a different profile of serum IL-6R production."
LHCGR affects CANX
1 |
1 |
hprd
No evidence text available
LGR5 affects LDLR
| 1
| 1
reach
"LGR5 binds to Wnt, low-density lipoprotein receptor related protein (LRP) and frizzled (FZD) after interaction with the ligand R-spondin (RSPO); the resulting complex promotes the phosphorylation of GSK-3beta Ser9 and inhibits the phosphorylation of beta-catenin."
LGR4 affects HNRNPK
1 |
1 |
biogrid
No evidence text available
LGR4 affects DCT
1 |
1 |
biogrid
No evidence text available
LGR4 affects CPD
1 |
1 |
biogrid
No evidence text available
LGR4 affects CANX
1 |
1 |
biogrid
No evidence text available
LGALS3BP affects ITGAV
1 |
biogrid
No evidence text available
LGALS3BP affects ERBB3
1 |
biogrid
No evidence text available
LGALS3BP affects CUL5
1 |
1 |
biogrid
No evidence text available
LDLR affects CD44
| 1
| 1
sparser
"The process requires the binding of apoE to the heparan sulfate proteoglycan/LDL receptor-related protein complex."
L1CAM affects CANX
1 |
1 |
biogrid
No evidence text available
KRT1 affects IL10
| 1
| 1
sparser
"Of note, mutations involving a basic region of K-RTA reduced the association of K-RTA with the IL-10 promoter."
KRT1 affects HDGF
1 |
1 |
biogrid
No evidence text available
KIT affects BSG
| 1
BSG binds KIT. 1 / 1
| 1
sparser
"CD147 expression was associated with mutated KIT (p = 0.039), as well as a progressive increase in Fletcher's Risk of Malignancy (p = 0.020)."
KCNA2 affects KCNA4, and MME
| 1
KCNA2 binds KCNA4 and MME. 1 / 1
| 1
sparser
"Reciprocal coimmunoprecipitation experiments revealed that the beta-subunit polypeptides are associated with Kv1.2 and Kv1.4, but not Kv2.1, alpha-subunits."
JMJD6 affects CXCL16
| 1
| 1
sparser
"Eryptotic erythrocyte phosphatidylserine binds to endothelial cell and platelet CXCL16 and CD36, potentially contributing to thrombotic vascular occlusion [24,41] ."
JMJD6 affects ADAM17
| 1
| 1
sparser
"We recently presented evidence that a direct interaction of ADAM17 with externalized phosphatidylserine (PS) is required for the protease to exert its sheddase function [ xref ]."
ITGB6 affects CD274
| 1
| 1
reach
"PD-L1 directly interacted with integrin beta6 (ITGB6) and activated the ITGB6 and FAK signaling pathway."
ITGB3 affects CD63
| 1
| 1
sparser
"We found that at concentration of 50–100 µg/ml GA decreased MFI levels of active form of αIIbβ3 integrin and CD63 by 43±5% and 57±4%, respectively for thrombin-activated human platelets ( xref ), and decreased ∼2-fold MFI levels of active form αIIbβ3 integrin and CD31 for thrombin-activated mouse platelets ( xref )."
ITGB1 affects KIT, and MME
| 1
ITGB1 binds KIT and MME. 1 / 1
| 1
sparser
"Results evidenced that differentiation process was associated with a significant reduction (p<0.05) in the expression of CD10 (from 92±5% to 0.1±0.09%), CD29 (from 98±2% to 0.7±0.5) and CD117 (from 15±2% to 0.7±0.05%), while only small differences were detected for the other tested antigens which showed a general decreased expression after differentiation had taken place ( xref and xref )."
ITGAM affects BMPR1A
| 1
ITGAM increases the amount of BMPR1A. 1 / 1
| 1
reach
"Since BMPR1a is not expressed by CD11b + cells (XREF_FIG) and is largely restricted to GFAP + cells (XREF_FIG) in the injured spinal cord, the increased infiltration of inflammatory cells is an indirect effect reflecting the defect in reactive gliosis."
INSR affects IL1B
| 1
| 1
sparser
"DM2 could potently modulate angiogenesis by the interaction of IL-1β with downstream insulin receptor and upstream androgen receptor."
INSR affects FCGR1A
| 1
| 1
sparser
"Free IGF-1 has a short half life, but at high levels it can bind to both the IGFR1 and insulin receptor (IR) to exert an anabolic effect."
INSR affects ACP2
| 1
| 1
reach
"LAP is associated with abnormal glucose homeostasis and IR, as well as increased alanine aminotransferase, in healthy people [XREF_BIBR]."
INPP5K affects IL1A
| 1
| 1
reach
"If we make the reasonable assumption that the molecular weight of PPS was about 3 kDa and had a net charge of -16, and if we further assume that PPS binds directly to IL-1alpha, then the predicted aggrecan loss profiles are consistent with PPS binding to IL-1 with a K m, d of 1 muM."
IL6ST affects IL1B
| 1
| 1
reach
"Interleukin (IL) -6 functions downstream of IL-1beta and has unique signal pathways : classic- or trans-signaling via membrane bound IL-6R or soluble IL-6R (sIL-6R)."
IL31RA affects GPNMB
1 |
1 |
biogrid
No evidence text available
IL1RN affects FGFR1
| 1
| 1
sparser
"CLCA4, ANXA9, GPR110, IL1RN, KLK12, PPARD, FLG and HSP90AAl are smoking dependent DEGs whereas GPR110, IL1RN and HSP90AAl are associated with lung cancer FLG is co-expressed with several query genes which are enriched in different cellular growth promoting pathways and FLG together with other genes plays key role in epidermal cell regulation."
IL1R1 affects ENO1
| 1
| 1
reach
"These results suggested that p80, which is generated from ErbB4 and translocates to the nuclei, interacts with alpha-enolase and inhibits neuregulin1 dependent ErbB4 mediated cell proliferation by impairing the c-myc gene transcription."
IL1B affects NALCN
| 1
IL1B activates NALCN. 1 / 1
| 1
sparser
"In addition, using slow voltage ramps we demonstrated that IL-1beta activates a non-selective cationic current (INSC) with a reversal potential of -38.8 +/- 1.8 mV."
IL1B affects GRIA1
| 1
| 1
sparser
"IL-1β affects various classical neurotransmitter systems, and there is evidence that the NMDA glutamate receptor and IL-1β interact with each other."
IL1B affects FGFR1
| 1
| 1
sparser
"In a mouse model of human breast cancer, fibroblast growth factor receptor 1-induced mammary tumorigenesis is associated with local production of IL-1β and can be blocked by treatment with an IL-1β neutralizing antibody (Reed et al., xref )."
IL1B affects CRY1
| 1
| 1
sparser
"Interestingly, although IL1β and IL-18 and their cellular receptors are related proteins, IL-18BP and IL-1βR displayed high specificity towards their targets: IL-18BP was not able to bind IL-1β and vice versa IL-1βR did not bind IL-18 [ xref ]."
IL1B affects CLIC1
| 1
IL1B increases the amount of CLIC1. 1 / 1
| 1
reach
"The intracellular chloride channel proteins CLIC1 and CLIC4 induce IL-1beta transcription and activate the NLRP3 inflammasome."
IL1B affects AQP1
| 1
| 1
sparser
"AQP1 deficiency is associated with a marked reduction of both lung IL-1β release and neutrophilic inflammation."
IL1B affects AGTR1
| 1
| 1
sparser
"In this study, we determined whether an interaction between IL-1β and AT1-R in the paraventricular nucleus (PVN) contributes to progression of HF."
IL1A affects IFNAR1
| 1
| 1
sparser
"Carriage of heterozygous or homozygous minor alleles of index SNPs IL10 rs1800896 and IL10 rs3024500, and proxy SNPs IL1A rs2856838 and IFNAR1 rs1041429 was associated with decreased risk of malaria (all p < 0·05)."
IL1A affects CD4
| 1
| 1
reach
", and Foucher et al. demonstrated that interaction between human macrophages and memory CD4 + T cells via membrane bound IL-1alpha is sufficient to polarize T cells toward Th1 or Th17 like phenotypes."
IL15RA affects BST2
| 1
| 1
sparser
"More importantly, the increased mRNA expression of IL-15Rα was associated with an increased IL-15Rα cell-surface expression as determined by flow cytometry after 48h of incubation with IFN-α with a more than two-fold increase in mean fluorescence intensity (MFI) (, middle panel)."
IL10 affects PTPN6
| 1
IL10 phosphorylates PTPN6. 1 / 1
| 1
sparser
"IL-10 enhanced SHP-1 phosphorylation and CD40-induced ERK-1/2 phosphorylation but reduced the CD40-induced p38MAPK phosphorylation, whereas anti-IL-10 Ab exhibited reverse effects on these CD40-induced functions, identifying IL-10 as a crucial element in the SHP-1-MAPK feedback system."
IL10 affects HRH1
| 1
| 1
sparser
"The interactions of histamine with IL-10 are extremely important for understanding the involvement of histamine in the pathogenesis of allergic disease."
IL10 affects HLA-DQB1
| 1
| 1
sparser
"Moreover, with DR3-DQB1*0201 and DR4-DQB1*0302 haplotypes being the highest-susceptibility region, we analyzed the interaction between IL-10 polymorphisms and HLA-DQB1 genotypes."
IL10 affects CRY1
| 1
| 1
sparser
"We therefore, intended to see if therapeutic response to conventional anti- Leishmania drug, SAG is associated with the levels of immune-suppressive cytokine IL-10 or vice versa ."
IFNGR1 affects CANX
1 |
1 |
hprd
No evidence text available
IFI30 affects B9D1
1 |
1 |
biogrid
No evidence text available
HTR3A affects CANX
1 |
1 |
hprd
No evidence text available
HRH1 affects CD63
| 1
| 1
sparser
"Electron micrographs of RBL cells and human basophils suggest that CD63 is associated with histamine containing granules [ xref - xref ]."
HRH1 affects C3
| 1
C3 binds HRH1. 1 / 1
| 1
sparser
"Elevated C3a, C5a, and histamine have been associated with severe permeability deficits in dengue virus patients and in the development of DHF and DSS [ xref , xref , xref , xref , xref ]."
HRH1 affects ADAM17
| 1
| 1
sparser
"These findings allow to exclude a direct interaction between H1R and TACE."
HNRNPK affects CUL5
1 |
1 |
biogrid
No evidence text available
HNRNPK affects CRY2
1 |
1 |
biogrid
No evidence text available
GRN affects GPR61
| 1
| 1
reach
"Further studies are required to decide whether PEPI binds to GPR61 and whether PEPI plays an important role in the control of gonadotropin secretion from gonadotrophs."
GRN affects CRY1
1 |
1 |
biogrid
No evidence text available
GRN affects CACNG5
1 |
1 |
biogrid
No evidence text available
GRN affects CACNA1A
1 |
1 |
biogrid
No evidence text available
GRIA1 affects CANX
1 |
1 |
hprd
No evidence text available
GRIA1 affects C3
| 1
| 1
sparser
"We identified one synonymous and two intronic GRIA1 SNPs associated with E . coli -ASP hypersensitivity on certain ALL subgroups."
GHR affects ADAM17
| 1
| 1
reach
"Interaction between GHR and TACE was only observed after growth hormone binding."
GABRG2 affects CANX
1 |
1 |
biogrid
No evidence text available
GABRA1 affects CANX
1 |
1 |
biogrid
No evidence text available
FCGR1A affects SCARB1
| 1
| 1
sparser
"Our findings that anti-SR-BI IgG blocks SR-A −/− microglial adhesion to fAβ-containing matrices by ∼40% while fucoidan blocks adhesion of both SR-A +/+ and SR-A −/− microglia by ∼75% ( Fig. 3a ) suggest that, assuming complete inhibition of SR-BI by anti-SR-BI IgG, scavenger-like receptors other than SR-A and SR-BI (e.g. RAGE, LRP, LOX-1, Fcγ-receptors ( Terry, 1999 )), also promote adhesion of microglia to fAβ-containing surfaces, and that unlike SR-A and SR-BI some of these other receptors are not inhibited by fucoidan."
FCGR1A affects DNER
| 1
FCGR1A inhibits DNER. 1 / 1
| 1
sparser
"Furthermore, 2PAPB-PreS–induced IgG inhibited Bet v 1–induced basophil activation in allergic patients and CD23-facilitated allergen presentation."
F3 affects CCL5
| 1
CCL5 binds F3. 1 / 1
| 1
sparser
"Notably, the authors previously reported that a functional polymorphism on the promoter region of the CCL5 / RANTES gene and tissue factor gene were associated with adult late-onset asthma in a Japanese population."
F3 affects ATP6AP1
| 1
| 1
sparser
"CF3-4M, CF2-4M, and HX2M preferentially bound perchlorate over perrhenate or thiocyanate (additional data provided in the xref )."
F2RL2 affects BSG
| 1
| 1
sparser
"To further verify the association between CD147 and Par3 expression, immunohistochemical analysis of 30 cases of HCC tissues was performed and indicated that CD147 expression was negatively associated with Par3 expression ( r = –0.3970, P = 0.029; Fig. xref C)."
ERBB3 affects CANX
1 |
1 |
biogrid
No evidence text available
ENO1 affects EFEMP1
1 |
1 |
biogrid
No evidence text available
ENO1 affects EBP
1 |
1 |
biogrid
No evidence text available
ENO1 affects CUL5
1 |
1 |
biogrid
No evidence text available
ENO1 affects CD4
1 |
1 |
biogrid
No evidence text available
ENO1 affects ATP6AP2
1 |
1 |
biogrid
No evidence text available
EFEMP1 affects ADAM17
| 1
| 1
reach
"We could not detect a significant association between fibulin-3 and ADAM17 by co-immunoprecipitation (XREF_SUPPLEMENTARY), suggesting that fibulin-3 probably regulated other mediator protein (s) that interact with ADAM17."
DERL1 affects CANX
1 |
1 |
biogrid
No evidence text available
DCT affects SSTR2
| 1
DCT increases the amount of SSTR2. 1 / 1
| 1
reach
"To determine whether SSTR2 expression levels correlated with successful peptide-receptor-based imaging, clinical data from the University of Iowa Neuroendocrine Tumor Registry Database were examined and patients from the highest and lowest quartiles of SSTR2 expression by dCT were compared (XREF_TABLE)."
DCT affects CHRM2
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reach
"When compared to the general population, this genetic polymorphism was not found to be more common in alcohol dependence per se, which excludes the possibility of spurious association between CHRM2 and DT."
CXCR4 affects CD274
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sparser
"Interestingly, PD-L1 high lung cancer cell lines were associated with higher expression of certain chemokines such as IL-8 and CXCL5 (neutrophil chemotactic factors), and chemokine receptor such as CXCR1 (IL-8 receptor) while PD-L1 low lung cancer cell lines were associated with higher expression of CXCR4 and CXCR7 that are essential for lung cancer progression and angiogenesis (Tables xref and xref ) [ xref , xref ]."
CXCL16 affects CD4
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reach
"Naive CD8 T cells, natural killer T cells and a subset of memory CD4 T cells bind CXCL16, and activated T cells migrated chemotactically to the soluble chemokine."
CUL5 affects CTSD
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1 |
biogrid
No evidence text available
CTSD affects CD4
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1 |
hprd
No evidence text available
CRY1 affects CD274
| 1
| 1
sparser
"9G2 binding to PD-L1 and vice versa ( xref ), suggesting that the 10F."
CPD affects CHRNB4
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reach
"Previous associations between CHRNA3, CHRNA5, CHRNB4 and CPD in EAs were replicated."
CPD affects CHRNA3
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reach
"Previous associations between CHRNA3, CHRNA5, CHRNB4 and CPD in EAs were replicated."
CHRNA7 affects CANX
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sparser
"We show an interaction between recombinantly-expressed GST-tagged Arc and endogenous calnexin in HEK293, SH-SY5Y neuroblastoma and PC12 cells."
CHRNA7 affects BST2
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| 1
sparser
"We assayed interaction of the amyloid beta peptide with SH-SY5Y cells using flow cytometry for the detection of the fluorescence signal of FITC-labelled A β 1–42 peptide after 5, 10, 15, and 30 min and after 1, 3, 18, and 24 h."
CD84 affects CD4
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sparser
"To examine whether CD84 and Ly108 can directly mediate adhesion, we compared binding of pre-activated WT andSh2d1a −/− CD4 + T cells to recombinant CD84, Ly108, and ICAM-2."
CD68 affects CSF2RA
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CD68 increases the amount of CSF2RA. 1 / 1
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reach
"GM-CSFRalpha was expressed by CD68 positive and CD163 positive macrophages in the synovium, and there was a significant increase in GM-CSFRalpha positive cells in patients in patients with RA as well as patients with PsA compared with patients with osteoarthritis and healthy controls."
CD44 affects CD68, and F3
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CD44 binds CD68 and F3. 1 / 1
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sparser
"By correlation analysis, more CD68 + TF macrophages were associated with more CD44v6 expression (p < 0.001), lower Snail TF expression (p = 0.08) and fewer tumor buds (p < 0.001)."
CD44 affects ALCAM
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sparser
"CD44 and ALCAM (CD166) have consistently been associated with tumor growth in xenografts."
CD44 affects ADAM8
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reach
"Similarly, in the angiogenic pathway, celecoxib treatment caused downregulation of IL-6 receptor, the ADAM8 (a disintegrin and metalloproteinase domain 8) gene, CD44 and integrin-beta binding proteins, and upregulation of neuropilin 2 (a VEGF receptor)."
CD274 affects TGFBR1
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CD274 inhibits TGFBR1. 1 / 1
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sparser
"Moreover, in the mouse model, the knockdown of PD-L1 inhibited transforming growth factor (TGF)-β1-induced cell metastasis in vivo."
CD274 affects ANTXR1
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sparser
"The loss of phosphatase and tensin homologue (PTEN) and transforming growth factor β receptor 1 (TGF-βR1) are associated with PD-L1 activation, possibly through the Akt signalling pathway [ xref , xref ]."
CCL5 affects BMPR2
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sparser
"This was linked mechanistically to enhanced interaction of BMPR2 with caveolin-1 via CCL5 deficiency-mediated stabilization of endothelial surface caveolin-1."
CASR affects IL1B, and TNF
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TNF binds CASR and IL1B. 1 / 1
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sparser
"The hypocalcemia of critically ill patients with burn injury or sepsis is associated with CASR gene upregulation by TNF-alpha and IL-1beta via kappaB elements, and by IL-6 via Stat1/3 and Sp1/3 elements in the CASR gene promoters, respectively."
CAPNS1 affects AGTRAP
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1 |
biogrid
No evidence text available
CACNA1A affects ADAM8
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| 1
sparser
"None of these antibodies inhibited the binding of human MAb MS2B6 to partially purified EA2B6."
BST2 affects KCNH2
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BST2 inhibits KCNH2. 1 / 1
| 1
sparser
"To test for such a scenario, the population of K562 cells with degraded DNA (subG 1 population) was determined in dependence on hERG1 inhibition (0 or 1 µM E4031) by flow cytometry (propidium iodide Nicoletti staining) 24 h after irradiation with 0 or 5 Gy ( xref )."
BST2 affects ITGB3
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BST2 activates ITGB3. 1 / 1
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sparser
"As platelet granule secretion induced by agonist stimulation plays critical roles in the amplification of platelet signaling and subsequent activation and aggregation, we also measured platelet degranulation, represented by P-selectin expression and αIIbβ3 activation by flow cytometry."
BST2 affects ANTXR1
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sparser
"Using this strategy, a monoclonal antibody, called AF334, was identified that, like SB5, was able to bind both mouse and human TEM8 by flow cytometry."
BSG affects F3
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BSG activates F3. 1 / 1
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sparser
"The epithelial CD147 subsequently can activate tissue factor on endothelial cells, a primary step in the coagulation cascade."
BSG affects ANTXR1
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| 1
sparser
"In support of this view, Qin et al. (2011) recently showed that the intrinsic resistance of KSHVpositive peripheral effusion lymphomas to the cytotoxic effects of paclitaxel and doxorubicin depends on orchestrated interactions of CD147 with lymphatic vessel endothelial receptor 1 (LYVE-1) and the homodimeric ATP-binding cassette (ABC)-G2/BCRP (breast cancer resistance protein) drug transporter that is highly expressed on the surface of primary effusion lymphoma (PEL)-derived cell lines."
AXL affects ADAM17
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sparser
"In addition, increased levels of soluble Axl and Mer were associated with increased levels of mature ADAM17, mature ADAM10, and Furin, proteins that are associated with Axl and Mer solubilization."
ATP6AP1 affects GRIA1
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ATP6AP1 phosphorylates GRIA1. 1 / 1
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sparser
"The activation of MSNs in rats was evaluated by measuring glutamate receptor subunit 1 phosphorylation (pGluR1) levels."
| PMC
ADRA1D affects AGTR1, and IL10
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| 1
sparser
"In contrast, a motif involving Adra1a , Il10 , and Agtr1 was associated with temporal dynamics that agreed well with predictions based on motif topology ( xref )."
ADAM17 affects NGFR
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ADAM17 phosphorylates NGFR. 1 / 1
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sparser
"We show that Trk-induced ADAM17 phosphorylation and generation of the p75NTR(ICD) is required for neurotrophin-induced Erk and Akt activation and for neurotrophin-dependent survival signaling."
ADAM17 affects IL1R1
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ADAM17 activates IL1R1. 1 / 1
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sparser
"In the classical NF-κB signaling pathway, HMGB1, TNF-α and IL-1 can activate toll-like receptor 4 (TLR-4), TNF receptor (TNFR) and IL-1R, respectively (Figure xref )."